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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97228_cuf3 >transcript:BL97228_cuf3-protein ID=transcript:BL97228_cuf3-protein|Name=transcript:BL97228_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=261bp
SQLGLEATPLPDSLEKKKMQIAGWSANLLENASGELGNMSHWNIGGDWKI
REGGYGTEKCFVTSHMRCTKYQEVDLTKTFSEEHLDSSPEIQVSEWYTQG
VCGGGFYTLEVTLMTYDGDVIKRYKSGERGNLYSGQWHEEKVTFTDYGAG
VRLVGIQSSGKDDKHWGGHYGARMSNAFVRVRREANAAEDDKFADVISEN
VTEEERNQQAALREKVVQKVLTENAELWSQDSNEGNVHLLRTKRFRNVCT
SKLISNDAKLD Run BLAST on NCBI mRNA from alignment at Sc0000303:279863..282477- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97228_cuf3 ID=transcript:BL97228_cuf3|Name=transcript:BL97228_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2615bp|location=Sequence derived from alignment at Sc0000303:279863..282477- (Branchiostoma lanceolatum)
TTCACAGTTGGGTCTGGAAGCCACGCCCCTGCCGGACAGTCTGGAGAAGA
AGAAAATGCAGATCGCCGGCTGGTCGGCAAATCTCCTGGAGAACGCCAGC
GGAGAGGTACGTCAGGGGGCTTATCTAGATCCCGGTTACCGTCAAGGTCG
GCTGGTGTTCGGCCAGGCTGGCTTGTGTAACTCCTACCTTGCAAAAATAC
AAGGCAATCAAATAGATCTAAATTGTACAGCAATTTAACTATCAAAGAAC
AAGAAAATGTCTATTGCCAAGAGTTATGTTACGGAAATGGGAGCTATAGA
ATACAAAGTTATGACCAACGTAAATTATATGATTTGCATAATTATTCATG
ATATCTTTACGAACTATATCCCACCTGTCTTTTTTCTACAGTTGGGGAAC
ATGTCTCACTGGAATATCGGTGGCGATTGGAAGATCCGCGAAGGAGGATA
TGGCACCGAAAAATGTACGCTATCATTATTTGTTTATTTGGGTTTACCAC
AACGTGGAAGGGAGGGCGAAACAGGTGCATGCGCACCTTTACAAATTCTC
CTCTCACACTTGAAACAACATCAACAGTACTAGTACAATACTTTGCAAAA
TCAACTATATATTAAAAAATACAATGTCAGTGTGTTTGTGTGTTTTGCTC
AAAATCCTATCCGCCCCCCCCCCTTCCTTCGGTACGTCAATATCACAAGT
TCGGGGAGTCGTATAGTTCGGGGAGTCGTATAATTTACGCTGACAAATGG
GCTATACAGATATGCGGAATCTACTGTATATACAAAGCGGGTCATAAAGG
AAGCATCACCCGGGTATTGGTATACAATGAAAGACTATATCTGTATATTG
GACGAATGGCTCTTTCGTTGATTCGTGGTAACGTTATGTGCTGTAGGTTT
CGTGACGTCACACATGCGCTGTACAAAGTACCAGGAGGTGGATCTGACCA
AGACGTTTTCTGAGGAACATCTGGACTCGTCTCCTGAAATCCAGGTAGGT
TCTCACGATAGGGGTGTATATGACTACAGATTCTGAGTGACAGAATATTT
CCTTAGTAGGCTTGATTAACATGGCCATTATAATGTATCGGAAGTTGAAA
CGCACACAGAACATGGCAAGCATGATAGATATAGGTTCCATGGTTTCTAT
GCAAAGTCAAAGCCCGTCAAATATTTGCCTTTTTACGGTCGTGGAATCGG
TCTATTTACCGGTCTTTGACTTGTATTGAACCTGTATCTATCTTGCTTGC
CACGTTGTCACGCAACCACTCTCTCATTGGTCGAATGGATAATTGTCATG
CTGTCATTGGTTGAACTGGTAATTGTGATGGACAGTCAGGATCAGTCTAT
TGCATACCGGAAATTTCAAAGTTATCACCGCGCTTTTTTGCCATTCCCTA
CAGGTGTCGGAGTGGTACACACAGGGTGTCTGTGGTGGAGGGTTCTACAC
ACTGGAGGTGACCCTGATGACGTATGACGGCGACGTCATCAAAAGGTAAG
GACAGGCCAATGACCCACCCCACGAAGCTGCTCTATACCATAAACTGTAT
ATAGCTGATGTCAGCAGCAACTCATTAGCTGTAAAGACCTCTCTCTCTGG
ATAACTAGTGCACTAAACTTTCTCACGAACAGAAAGACGCTTTTCTCTCA
AAATCGCAGAACCAAATTACAGAAACAATGTGTCTTTTCGTCTTCCTCTG
CTTCCAAATATGAAGGCAAACGCAACTTGTCTAGATATAGCCAACACTGG
TATTTGAGTAGTCTGTTGTTACAACAATGTCAATCACATCCTAGTACCAG
GTACTTGCACTTCCTCTCGGGCATGAACTTGCAAATAAACTTTTTGATAA
TAAACGCTGGCGTGAATGACTCAATGCAGTGATATTTGGCACCGAGGGGC
TCATGCATTATCCATCGTTGTCTTTCAGGTATAAGAGCGGGGAGAGAGGA
AACCTGTATTCAGGACAGTGGCATGAGGAAAAAGTCACATTTACCGACTA
CGGCGCAGGAGTAAGACTTGTTGGCATTCAATCATCAGGTACGGTAGACA
TGGCCCATGTGGGAACTTAACGTCAACTGTTGAGGAATATGATGTCTTTC
GCAGTCGTGTAACACCAACTCAGTTGTTTATATGTACCCTCAAAAAATCA
ATAATTATAGCCAATATCTTTTCACTCATTTTCATCAGGTAAGGATGACA
AGCACTGGGGCGGTCATTACGGTGCCCGGATGTCCAACGCCTTCGTCAGG
GTGAGGAGAGAGGCGAACGCAGCGGAAGATGACAAATTTGCTGACGTAAT
TTCCGAGAACGTGACGGAAGAAGAGAGGAACCAGCAGGCAGCCTTGAGGG
AGAAGGTCGTTCAGAAGGTGCTGACGGAAAATGCCGAACTTTGGTCACAG
GACAGCAACGAAGGTAATGTTCACTTATTACGAACAAAACGTTTTAGAAA
TGTATGTACATCAAAATTGATTTCTAATGACGCCAAACTTGACTAAACAC
TCAGTGTAATGGTTGAGAAATATAGATTATGAGCCTGGCATGGCGTTGGC
CTTTTAAAGTGTAAAAGTGATATATCTGAGTGGAAAATAAATAGTCATGT
CGAAAAGTGCTATAC Coding sequence (CDS) from alignment at Sc0000303:279863..282477- >transcript:BL97228_cuf3 ID=transcript:BL97228_cuf3|Name=transcript:BL97228_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=4716bp|location=Sequence derived from alignment at Sc0000303:279863..282477- (Branchiostoma lanceolatum)
TCACAGTTGGGTCTGGAAGCCACGCCCCTGCCGGACAGTCTGGAGAAGAA
GAAAATGCAGATCGCCGGCTGGTCGGCAAATCTCCTGGAGAACGCCAGCG
GAGAGTTGGGGAACATGTCTCACTGGAATATCGGTGGCGATTGGAAGATC
CGCGAAGGAGGATATGGCACCGAAAAATGTTTCGTGACGTCACACATGCG
CTGTACAAAGTACCAGGAGGTGGATCTGACCAAGACGTTTTCTGAGGAAC
ATCTGGACTCGTCTCCTGAAATCCAGGTGTCGGAGTGGTACACACAGGGT
GTCTGTGGTGGAGGGTTCTACACACTGGAGGTGACCCTGATGACGTATGA
CGGCGACGTCATCAAAAGGTATAAGAGCGGGGAGAGAGGAAACCTGTATT
CAGGACAGTGGCATGAGGAAAAAGTCACATTTACCGACTACGGCGCAGGA
GTAAGACTTGTTGGCATTCAATCATCAGGTAAGGATGACAAGCACTGGGG
CGGTCATTACGGTGCCCGGATGTCCAACGCCTTCGTCAGGGTGAGGAGAG
AGGCGAACGCAGCGGAAGATGACAAATTTGCTGACGTAATTTCCGAGAAC
GTGACGGAAGAAGAGAGGAACCAGCAGGCAGCCTTGAGGGAGAAGGTCGT
TCAGAAGGTGCTGACGGAAAATGCCGAACTTTGGTCACAGGACAGCAACG
AAGGTAATGTTCACTTATTACGAACAAAACGTTTTAGAAATGTATGTACA
TCAAAATTGATTTCTAATGACGCCAAACTTGACTAATCACAGTTGGGTCT
GGAAGCCACGCCCCTGCCGGACAGTCTGGAGAAGAAGAAAATGCAGATCG
CCGGCTGGTCGGCAAATCTCCTGGAGAACGCCAGCGGAGAGTTGGGGAAC
ATGTCTCACTGGAATATCGGTGGCGATTGGAAGATCCGCGAAGGAGGATA
TGGCACCGAAAAATGTTTCGTGACGTCACACATGCGCTGTACAAAGTACC
AGGAGGTGGATCTGACCAAGACGTTTTCTGAGGAACATCTGGACTCGTCT
CCTGAAATCCAGGTGTCGGAGTGGTACACACAGGGTGTCTGTGGTGGAGG
GTTCTACACACTGGAGGTGACCCTGATGACGTATGACGGCGACGTCATCA
AAAGGTATAAGAGCGGGGAGAGAGGAAACCTGTATTCAGGACAGTGGCAT
GAGGAAAAAGTCACATTTACCGACTACGGCGCAGGAGTAAGACTTGTTGG
CATTCAATCATCAGGTAAGGATGACAAGCACTGGGGCGGTCATTACGGTG
CCCGGATGTCCAACGCCTTCGTCAGGGTGAGGAGAGAGGCGAACGCAGCG
GAAGATGACAAATTTGCTGACGTAATTTCCGAGAACGTGACGGAAGAAGA
GAGGAACCAGCAGGCAGCCTTGAGGGAGAAGGTCGTTCAGAAGGTGCTGA
CGGAAAATGCCGAACTTTGGTCACAGGACAGCAACGAAGGTAATGTTCAC
TTATTACGAACAAAACGTTTTAGAAATGTATGTACATCAAAATTGATTTC
TAATGACGCCAAACTTGACTAATCACAGTTGGGTCTGGAAGCCACGCCCC
TGCCGGACAGTCTGGAGAAGAAGAAAATGCAGATCGCCGGCTGGTCGGCA
AATCTCCTGGAGAACGCCAGCGGAGAGTTGGGGAACATGTCTCACTGGAA
TATCGGTGGCGATTGGAAGATCCGCGAAGGAGGATATGGCACCGAAAAAT
GTTTCGTGACGTCACACATGCGCTGTACAAAGTACCAGGAGGTGGATCTG
ACCAAGACGTTTTCTGAGGAACATCTGGACTCGTCTCCTGAAATCCAGGT
GTCGGAGTGGTACACACAGGGTGTCTGTGGTGGAGGGTTCTACACACTGG
AGGTGACCCTGATGACGTATGACGGCGACGTCATCAAAAGGTATAAGAGC
GGGGAGAGAGGAAACCTGTATTCAGGACAGTGGCATGAGGAAAAAGTCAC
ATTTACCGACTACGGCGCAGGAGTAAGACTTGTTGGCATTCAATCATCAG
GTAAGGATGACAAGCACTGGGGCGGTCATTACGGTGCCCGGATGTCCAAC
GCCTTCGTCAGGGTGAGGAGAGAGGCGAACGCAGCGGAAGATGACAAATT
TGCTGACGTAATTTCCGAGAACGTGACGGAAGAAGAGAGGAACCAGCAGG
CAGCCTTGAGGGAGAAGGTCGTTCAGAAGGTGCTGACGGAAAATGCCGAA
CTTTGGTCACAGGACAGCAACGAAGGTAATGTTCACTTATTACGAACAAA
ACGTTTTAGAAATGTATGTACATCAAAATTGATTTCTAATGACGCCAAAC
TTGACTAATCACAGTTGGGTCTGGAAGCCACGCCCCTGCCGGACAGTCTG
GAGAAGAAGAAAATGCAGATCGCCGGCTGGTCGGCAAATCTCCTGGAGAA
CGCCAGCGGAGAGTTGGGGAACATGTCTCACTGGAATATCGGTGGCGATT
GGAAGATCCGCGAAGGAGGATATGGCACCGAAAAATGTTTCGTGACGTCA
CACATGCGCTGTACAAAGTACCAGGAGGTGGATCTGACCAAGACGTTTTC
TGAGGAACATCTGGACTCGTCTCCTGAAATCCAGGTGTCGGAGTGGTACA
CACAGGGTGTCTGTGGTGGAGGGTTCTACACACTGGAGGTGACCCTGATG
ACGTATGACGGCGACGTCATCAAAAGGTATAAGAGCGGGGAGAGAGGAAA
CCTGTATTCAGGACAGTGGCATGAGGAAAAAGTCACATTTACCGACTACG
GCGCAGGAGTAAGACTTGTTGGCATTCAATCATCAGGTAAGGATGACAAG
CACTGGGGCGGTCATTACGGTGCCCGGATGTCCAACGCCTTCGTCAGGGT
GAGGAGAGAGGCGAACGCAGCGGAAGATGACAAATTTGCTGACGTAATTT
CCGAGAACGTGACGGAAGAAGAGAGGAACCAGCAGGCAGCCTTGAGGGAG
AAGGTCGTTCAGAAGGTGCTGACGGAAAATGCCGAACTTTGGTCACAGGA
CAGCAACGAAGGTAATGTTCACTTATTACGAACAAAACGTTTTAGAAATG
TATGTACATCAAAATTGATTTCTAATGACGCCAAACTTGACTAATCACAG
TTGGGTCTGGAAGCCACGCCCCTGCCGGACAGTCTGGAGAAGAAGAAAAT
GCAGATCGCCGGCTGGTCGGCAAATCTCCTGGAGAACGCCAGCGGAGAGT
TGGGGAACATGTCTCACTGGAATATCGGTGGCGATTGGAAGATCCGCGAA
GGAGGATATGGCACCGAAAAATGTTTCGTGACGTCACACATGCGCTGTAC
AAAGTACCAGGAGGTGGATCTGACCAAGACGTTTTCTGAGGAACATCTGG
ACTCGTCTCCTGAAATCCAGGTGTCGGAGTGGTACACACAGGGTGTCTGT
GGTGGAGGGTTCTACACACTGGAGGTGACCCTGATGACGTATGACGGCGA
CGTCATCAAAAGGTATAAGAGCGGGGAGAGAGGAAACCTGTATTCAGGAC
AGTGGCATGAGGAAAAAGTCACATTTACCGACTACGGCGCAGGAGTAAGA
CTTGTTGGCATTCAATCATCAGGTAAGGATGACAAGCACTGGGGCGGTCA
TTACGGTGCCCGGATGTCCAACGCCTTCGTCAGGGTGAGGAGAGAGGCGA
ACGCAGCGGAAGATGACAAATTTGCTGACGTAATTTCCGAGAACGTGACG
GAAGAAGAGAGGAACCAGCAGGCAGCCTTGAGGGAGAAGGTCGTTCAGAA
GGTGCTGACGGAAAATGCCGAACTTTGGTCACAGGACAGCAACGAAGGTA
ATGTTCACTTATTACGAACAAAACGTTTTAGAAATGTATGTACATCAAAA
TTGATTTCTAATGACGCCAAACTTGACTAATCACAGTTGGGTCTGGAAGC
CACGCCCCTGCCGGACAGTCTGGAGAAGAAGAAAATGCAGATCGCCGGCT
GGTCGGCAAATCTCCTGGAGAACGCCAGCGGAGAGTTGGGGAACATGTCT
CACTGGAATATCGGTGGCGATTGGAAGATCCGCGAAGGAGGATATGGCAC
CGAAAAATGTTTCGTGACGTCACACATGCGCTGTACAAAGTACCAGGAGG
TGGATCTGACCAAGACGTTTTCTGAGGAACATCTGGACTCGTCTCCTGAA
ATCCAGGTGTCGGAGTGGTACACACAGGGTGTCTGTGGTGGAGGGTTCTA
CACACTGGAGGTGACCCTGATGACGTATGACGGCGACGTCATCAAAAGGT
ATAAGAGCGGGGAGAGAGGAAACCTGTATTCAGGACAGTGGCATGAGGAA
AAAGTCACATTTACCGACTACGGCGCAGGAGTAAGACTTGTTGGCATTCA
ATCATCAGGTAAGGATGACAAGCACTGGGGCGGTCATTACGGTGCCCGGA
TGTCCAACGCCTTCGTCAGGGTGAGGAGAGAGGCGAACGCAGCGGAAGAT
GACAAATTTGCTGACGTAATTTCCGAGAACGTGACGGAAGAAGAGAGGAA
CCAGCAGGCAGCCTTGAGGGAGAAGGTCGTTCAGAAGGTGCTGACGGAAA
ATGCCGAACTTTGGTCACAGGACAGCAACGAAGGTAATGTTCACTTATTA
CGAACAAAACGTTTTAGAAATGTATGTACATCAAAATTGATTTCTAATGA
CGCCAAACTTGACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000303 | genome | Sc0000303:279863..282477 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97228_cuf3 |
| Biotype | protein_coding |
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