transcript:BL97225_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97225_cuf1
Unique Nametranscript:BL97225_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97225_cuf1

>transcript:BL97225_cuf1-protein ID=transcript:BL97225_cuf1-protein|Name=transcript:BL97225_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=192bp
ELCEEGYFGDATKGTPEDCKPMKQCQCHGHSNRCDSTGVCKNCRHNTMGQ
MCERCRPGYVGNPRQQTPRDCSPLFPGCNCHGHSLTCDALGKCTFCAHNT
VGDRCQKCLPGYVGDARRGTPTDCQQYRPTTPCVCNGHSKQCDQSGTCVN
CQHNTEGARCERCKSGYHGDATRGTADDCQSVRQQCFCHGHS
Run BLAST on NCBI

mRNA from alignment at Sc0000303:118222..124471+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97225_cuf1 ID=transcript:BL97225_cuf1|Name=transcript:BL97225_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=6250bp|location=Sequence derived from alignment at Sc0000303:118222..124471+ (Branchiostoma lanceolatum)
GTGAGCTGTGTGAGGAGGGGTACTTCGGAGACGCCACGAAAGGGACCCCT GAGGACTGCAAACCCATGAAACAGTGTCAGTGCCATGGCCACTCCAACAG ATGCGACAGTACTGGAGTTTGTAAGGTAAACTTCTAACTAGAANCCCATT AAGCCCCCGTCACAAATCAAGAATTTCGCTCGGCCGACTTGTCGGCGAGC TCCAAATGGCGATTTTCGGCCGAAGTACGACCGACGTCCTGGCGATTCTG CGAGCTTCGGGCGATTTTTCGGAGCTCGGCCGACGTTCGCGGGTCACTGG AAGCTGCGCTTAAATTCAGCGAGGCCTCGGCGACGATTTTTGAACTCGCA CAGCTCGTCAACAGTTTGCCCGTAGCTCGCCCGAGCAACGCCCAGCGCTC GGCCAATATTCGGGCGGGCATCCGAGGATTTTAGACCCGATTTTTGGTCG GTCGGAGGTCGCCCGANCGGCCTCGTGCGAGCCTCGCACGGGCTTTGTAC AATAATCGGACGACGGTTAGCCTGTATTACACAAGCTCTCGGCCGGAGGT TTATTGCCCCCCACCCAAGGGTGGGGGGCAATAAACCTCCGGCCGAGAGC TTGTGTAATACAGGCTAGACGACGGTCGTCAGTGTTCCGGCCGACTCATG AAAAATAAGGCGTGCTTCGGGCGAGCGTTGTACAAGTATCGATGGGCGCT TGGACGGGCTCCGGCCGAACTCCTTCTTGTTTATATNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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TACGTGGGGAACCCCAGACAGCAGACACCCAGAGACTGCAGCCCGCTCTT CCCAGGATGCAACTGTCACGGCCACTCCCTGACCTGCGACGCGTTGGGCA AGTGCACGGTAAGGCCTAGAAAATAAGTAAGGTTGTGCTGTTGATCCTAT AAGGCCTAGCCTTTTTTGTCACGATCAGACGCTTGCGAGGGACTTTATAT TTCATATTTCATAATATTTCATCTGACATTTAAGTGACGAAATTTAAAAC AGACCTCCTGTATTTCACACTCTGTTAACAGAAGAGGGCGGCTTTGACAG TTGATGTAAGAATAAATATTAATCTTAACCGGAAACGCAACATCCATTCC TCGACCTAAGCATCAACATTTTTAAGTGGTGTTTCTTCTTTCTTTGATTT GCTTCTCCTTTTTCGGAAAGTCTACACTACTGTTTGGAAGTAAAGATATG GTACAGTACACTGTATAAGTTTATTGCAAGTTCTTGCCCGCAGGCTAATT GCAAGTTCATAAAACATGGAAGGACTGACAGACAATTGGTAACAATATAG CATGTGACTATTCTAGTTCAAATACTAACACTAAATTCTATATTATTTGG GTTTGACTTCTCTTTTCGAGACAGTGGAAGACGAATGCTCCCACATTTTC TGAAATGTGTGGGTTTTGTGATGTTAACAGGAGAGTAGTTCTCTTTTGGT ATGTAAACTGAATGTTAACTCTGAATTCTAGACGACGCCCTAGCATACTC GTATACAAGGCACTTTAACTTTATACAAAATATTCCATGTGTCTTTTTGG TAGTTCTGCGCACACAACACCGTCGGTGACCGGTGTCAGAAGTGCCTGCC GGGGTACGTGGGAGACGCGCGGCGCGGTACACCCACCGACTGTCAGCAGT ACAGACCGACCACGCCCTGCGTGTGCAACGGACACTCCAAACAATGCGAC CAGTCTGGCACCTGCGTGGTACGCGTATGTACATTTTTACAGGTTTGCGA TAGCAGAGCCTATATTGGTTTAGGTCCCGTCCTTTAGAGGCCGCCATTTC CAAACTGTACAGAAAATATGTATGCTCGTTAATGGAAGACCAGCTGTCAG CCAATCAGAGATTCAGCTTTGCGTATATAAAACATATAGGCGATGCTCTG ATTGGTTAACAGCAGGTAGGAAGCCACGTTCACAAAAATGGAAACCTCAG CCCGGGTTAACAGAGCATCTCCAAGGCATATGCACAGTAGGCTTTGCTAA GGAGGAGAATAGTTAAGTTGTATTGCGTAGATTTAGCCAATGGCTTATCA AGGAAAGCAGTTTGTCAAAATTCAAGCGAACGACCATATTTAATGAAAGT CCTTTTTAATTTTTTTTCAAGAACTGTCAACACAACACGGAGGGCGCGCG CTGTGAGCGGTGCAAGTCCGGTTACCATGGCGACGCCACTAGGGGAACTG CAGACGACTGTCAGTCCGTCAGACAGCAGTGTTTCTGTCACGGGCACTCC

Coding sequence (CDS) from alignment at Sc0000303:118222..124471+

>transcript:BL97225_cuf1 ID=transcript:BL97225_cuf1|Name=transcript:BL97225_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2304bp|location=Sequence derived from alignment at Sc0000303:118222..124471+ (Branchiostoma lanceolatum)
GAGCTGTGTGAGGAGGGGTACTTCGGAGACGCCACGAAAGGGACCCCTGA
GGACTGCAAACCCATGAAACAGTGTCAGTGCCATGGCCACTCCAACAGAT
GCGACAGTACTGGAGTTTGTAAGAACTGCAGGCATAACACCATGGGGCAG
ATGTGCGAGCGGTGCAGGCCGGGATACGTGGGGAACCCCAGACAGCAGAC
ACCCAGAGACTGCAGCCCGCTCTTCCCAGGATGCAACTGTCACGGCCACT
CCCTGACCTGCGACGCGTTGGGCAAGTGCACGTTCTGCGCACACAACACC
GTCGGTGACCGGTGTCAGAAGTGCCTGCCGGGGTACGTGGGAGACGCGCG
GCGCGGTACACCCACCGACTGTCAGCAGTACAGACCGACCACGCCCTGCG
TGTGCAACGGACACTCCAAACAATGCGACCAGTCTGGCACCTGCGTGAAC
TGTCAACACAACACGGAGGGCGCGCGCTGTGAGCGGTGCAAGTCCGGTTA
CCATGGCGACGCCACTAGGGGAACTGCAGACGACTGTCAGTCCGTCAGAC
AGCAGTGTTTCTGTCACGGGCACTCCGAGCTGTGTGAGGAGGGGTACTTC
GGAGACGCCACGAAAGGGACCCCTGAGGACTGCAAACCCATGAAACAGTG
TCAGTGCCATGGCCACTCCAACAGATGCGACAGTACTGGAGTTTGTAAGA
ACTGCAGGCATAACACCATGGGGCAGATGTGCGAGCGGTGCAGGCCGGGA
TACGTGGGGAACCCCAGACAGCAGACACCCAGAGACTGCAGCCCGCTCTT
CCCAGGATGCAACTGTCACGGCCACTCCCTGACCTGCGACGCGTTGGGCA
AGTGCACGTTCTGCGCACACAACACCGTCGGTGACCGGTGTCAGAAGTGC
CTGCCGGGGTACGTGGGAGACGCGCGGCGCGGTACACCCACCGACTGTCA
GCAGTACAGACCGACCACGCCCTGCGTGTGCAACGGACACTCCAAACAAT
GCGACCAGTCTGGCACCTGCGTGAACTGTCAACACAACACGGAGGGCGCG
CGCTGTGAGCGGTGCAAGTCCGGTTACCATGGCGACGCCACTAGGGGAAC
TGCAGACGACTGTCAGTCCGTCAGACAGCAGTGTTTCTGTCACGGGCACT
CCGAGCTGTGTGAGGAGGGGTACTTCGGAGACGCCACGAAAGGGACCCCT
GAGGACTGCAAACCCATGAAACAGTGTCAGTGCCATGGCCACTCCAACAG
ATGCGACAGTACTGGAGTTTGTAAGAACTGCAGGCATAACACCATGGGGC
AGATGTGCGAGCGGTGCAGGCCGGGATACGTGGGGAACCCCAGACAGCAG
ACACCCAGAGACTGCAGCCCGCTCTTCCCAGGATGCAACTGTCACGGCCA
CTCCCTGACCTGCGACGCGTTGGGCAAGTGCACGTTCTGCGCACACAACA
CCGTCGGTGACCGGTGTCAGAAGTGCCTGCCGGGGTACGTGGGAGACGCG
CGGCGCGGTACACCCACCGACTGTCAGCAGTACAGACCGACCACGCCCTG
CGTGTGCAACGGACACTCCAAACAATGCGACCAGTCTGGCACCTGCGTGA
ACTGTCAACACAACACGGAGGGCGCGCGCTGTGAGCGGTGCAAGTCCGGT
TACCATGGCGACGCCACTAGGGGAACTGCAGACGACTGTCAGTCCGTCAG
ACAGCAGTGTTTCTGTCACGGGCACTCCGAGCTGTGTGAGGAGGGGTACT
TCGGAGACGCCACGAAAGGGACCCCTGAGGACTGCAAACCCATGAAACAG
TGTCAGTGCCATGGCCACTCCAACAGATGCGACAGTACTGGAGTTTGTAA
GAACTGCAGGCATAACACCATGGGGCAGATGTGCGAGCGGTGCAGGCCGG
GATACGTGGGGAACCCCAGACAGCAGACACCCAGAGACTGCAGCCCGCTC
TTCCCAGGATGCAACTGTCACGGCCACTCCCTGACCTGCGACGCGTTGGG
CAAGTGCACGTTCTGCGCACACAACACCGTCGGTGACCGGTGTCAGAAGT
GCCTGCCGGGGTACGTGGGAGACGCGCGGCGCGGTACACCCACCGACTGT
CAGCAGTACAGACCGACCACGCCCTGCGTGTGCAACGGACACTCCAAACA
ATGCGACCAGTCTGGCACCTGCGTGAACTGTCAACACAACACGGAGGGCG
CGCGCTGTGAGCGGTGCAAGTCCGGTTACCATGGCGACGCCACTAGGGGA
ACTGCAGACGACTGTCAGTCCGTCAGACAGCAGTGTTTCTGTCACGGGCA
CTCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97225gene:BL97225Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97225_cuf1transcript:BL97225_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97225_cuf1-E1BL97225_cuf1-E1-1564476830-429857Branchiostoma lanceolatumexon
BL97225_cuf1-E2BL97225_cuf1-E2-1564476830-429859Branchiostoma lanceolatumexon
BL97225_cuf1-E3BL97225_cuf1-E3-1564476830-429861Branchiostoma lanceolatumexon
BL97225_cuf1-E4BL97225_cuf1-E4-1564476830-429863Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000303genomeSc0000303:118222..124471 +
Properties
Property NameValue
Transcript idBL97225_cuf1
Biotypeprotein_coding