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transcript:BL97216_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97216_cuf4
Unique Nametranscript:BL97216_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97216_cuf4

>transcript:BL97216_cuf4-protein ID=transcript:BL97216_cuf4-protein|Name=transcript:BL97216_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=165bp
SGLHAHPACSSYCITKAALESFSDALRHEMHKWGVKVVLVEPCAFSTCTD
IVKAETYNRLIQNLRDNIEEAVKEDYGMEYVDFKLGKIRAAHFAPFQAKD
AKAVIDALADAVTLTTPSHRYLIGGSFEDYVNNAWLGYFPSKWTDSTERN
EREDDPKPAMLQKTT
Run BLAST on NCBI

mRNA from alignment at Sc0000054:539405..541585-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97216_cuf4 ID=transcript:BL97216_cuf4|Name=transcript:BL97216_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=2181bp|location=Sequence derived from alignment at Sc0000054:539405..541585- (Branchiostoma lanceolatum)
GTCCGGACTTCACGCACACCCGGCTTGTTCTTCCTACTGCATAACCAAGG CGGCCCTGGAGTCTTTCTCGGATGCGCTCAGGTATGTAACAAGTGCATAT ATTTATACGGATGTACATACATATGCATGGACATACATACCTACGTACAC ACATACATACATACATGCTTATTACATCATCTTCATTATCATCACTGCAT ATCAATGTATAGTACTGAGGCGGGCCGTCATGTTCGTCCACATCTTAGCA GTTGCTATCCCCATATATATATATATATGTTATATATGAATGCATCATGC TTACATACATGCATTATACACTTACACATTAAGTACAATGTCACAACTCA TACATATGAGTATGTCATAATTGAGAAGTTGCACAGTGTGAAAGGTCTCC TTAAACAAAGAGCCCTGCAGCAGCATTCCTGCGTTCCTTTAGATTTTAAA CGCATGTGAGAAGGCCTCAGTCTATTTACATGAATGAATTCAAGGTTTAT TGCAAGTTTGTTGCAAAAGTATATTATAAGCAACTTGCTGAATTAGGTAC GTAGCGCAGTCAAACGATTTTACATCGAAGAGAAACAAAAGGAAAATCTT GAAAAATTCAAACCTTTGTGTTTTTTCTACCTTGTTAACTAACGAACTTG ACTAATACTACAGGCATGAGATGCACAAGTGGGGTGTGAAAGTCGTCCTG GTAGAGCCATGTGCCTTTTCTACGTGTACGGATATTGTTAAGGCGGAGAC CTACAATAGGCTCATTCAGGTATGCCGTCTGCATCATGGTTGTATTGGTA CCCTTTTGAAGCCATTGAGTTTTTCATAAAACCAACGGCTATTGCACAAC TTAACTGAGCATGTTATAGACAAGGAGAACACCGGGTTGTAAAGGGCTAT TGCAAATATTGACATTAAGGAAACGTCTAGTTCTATCTTCAATCATATGT TTCAGGAATAAGAACAAATATGACGATAACACAGAAACTCTACGACAAAA AAAAAAGAAGTATATAGTGCAGGAGGCTAGCTTTTTTTGTTCTTCATTTT CACGAAACGACCACTTACATGTATCATCCAGAACCTGCGGGACAACATAG AAGAAGCTGTGAAGGAGGATTATGGCATGGAGTACGTCGACTTCAAGTTG GGAAAGATACGAGCAGCTCATTTTGCCCCATTCCAAGCTAAAGATGCTAA GGCTGTTATAGATGTGAGTCTTTTCTGAGTCTACATAGTCACTCCGGCAA GGTTTGCTGATTGCTGAATCATGATTCTATTCAAAGAACAAAAAGTCAGT AAAACAGGTTAAGTTGTGATTTGAGCAGAGAAAAAGTTTTACCTCACCTG TATTTGATGGAATTGATGTGAATGATAATGATGTCTAAAGAGGATACTTA ATAGTAGAATGGGGCGTATTAGGAACATGTGGAAGTCGCCTGTAAATACT AGGTTGTTAGTTTTGACGTAGAAAGTATTTCTCTGGTTTGATACGTCTTA CTAACATCAAACTACAGGTATGATGCATTCTAGACAACAACATTACCTGC TGATAGCAAAGATTGAATACAGTGCACAACTTCTAATACATTTATTGCCC TGCTAGAATTCTGCCTGCAACGTTTTATCAATCGTACGGAAAATTCAAAG GACACAAAGAACAACATTGATGTTGCTGATGTTCAATTCGCAGGCCCTGG CGGACGCTGTCACCCTGACCACCCCCTCTCATCGCTACTTGATCGGAGGC AGTTTTGAGGACTACGTAAACAACGCCTGGCTGGGCTACTTCCCCTCGAA GTGGACTGACTCTACAGAGAGGAACGAGAGGGAAGACGACCCTAAACCTG CCATGCTGCAGAAAACTACATAAGACAGCCCCAGTTGGTTTCGTAGCGTT CGTAAATTCAATAACTCAGTGTTTTTGAGGTTTGAAACACATTGTTTATT GTCTATTTTGCTCAAATACTTTAATTACAATATATAGATACAGAAAATGG ATAGATAGAAAAGATCATTATCAAACTTTTCTTGTTAGATTATCATATGT TAGAATCCTTTAATTAGACACGCTCAGAGTCAAAGCTCCTGTGTTGAGGA AAAAGGAAAGTAGGGATAAAGAGCAATATATGAGTAGTAATAAACAGCAA AATACAGTACAACATATTCTTGGCAAGTTTG

Coding sequence (CDS) from alignment at Sc0000054:539405..541585-

>transcript:BL97216_cuf4 ID=transcript:BL97216_cuf4|Name=transcript:BL97216_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=1992bp|location=Sequence derived from alignment at Sc0000054:539405..541585- (Branchiostoma lanceolatum)
TCCGGACTTCACGCACACCCGGCTTGTTCTTCCTACTGCATAACCAAGGC
GGCCCTGGAGTCTTTCTCGGATGCGCTCAGGCATGAGATGCACAAGTGGG
GTGTGAAAGTCGTCCTGGTAGAGCCATGTGCCTTTTCTACGTGTACGGAT
ATTGTTAAGGCGGAGACCTACAATAGGCTCATTCAGAACCTGCGGGACAA
CATAGAAGAAGCTGTGAAGGAGGATTATGGCATGGAGTACGTCGACTTCA
AGTTGGGAAAGATACGAGCAGCTCATTTTGCCCCATTCCAAGCTAAAGAT
GCTAAGGCTGTTATAGATGCCCTGGCGGACGCTGTCACCCTGACCACCCC
CTCTCATCGCTACTTGATCGGAGGCAGTTTTGAGGACTACGTAAACAACG
CCTGGCTGGGCTACTTCCCCTCGAAGTGGACTGACTCTACAGAGAGGAAC
GAGAGGGAAGACGACCCTAAACCTGCCATGCTGCAGAAAACTACATAATC
CGGACTTCACGCACACCCGGCTTGTTCTTCCTACTGCATAACCAAGGCGG
CCCTGGAGTCTTTCTCGGATGCGCTCAGGCATGAGATGCACAAGTGGGGT
GTGAAAGTCGTCCTGGTAGAGCCATGTGCCTTTTCTACGTGTACGGATAT
TGTTAAGGCGGAGACCTACAATAGGCTCATTCAGAACCTGCGGGACAACA
TAGAAGAAGCTGTGAAGGAGGATTATGGCATGGAGTACGTCGACTTCAAG
TTGGGAAAGATACGAGCAGCTCATTTTGCCCCATTCCAAGCTAAAGATGC
TAAGGCTGTTATAGATGCCCTGGCGGACGCTGTCACCCTGACCACCCCCT
CTCATCGCTACTTGATCGGAGGCAGTTTTGAGGACTACGTAAACAACGCC
TGGCTGGGCTACTTCCCCTCGAAGTGGACTGACTCTACAGAGAGGAACGA
GAGGGAAGACGACCCTAAACCTGCCATGCTGCAGAAAACTACATAATCCG
GACTTCACGCACACCCGGCTTGTTCTTCCTACTGCATAACCAAGGCGGCC
CTGGAGTCTTTCTCGGATGCGCTCAGGCATGAGATGCACAAGTGGGGTGT
GAAAGTCGTCCTGGTAGAGCCATGTGCCTTTTCTACGTGTACGGATATTG
TTAAGGCGGAGACCTACAATAGGCTCATTCAGAACCTGCGGGACAACATA
GAAGAAGCTGTGAAGGAGGATTATGGCATGGAGTACGTCGACTTCAAGTT
GGGAAAGATACGAGCAGCTCATTTTGCCCCATTCCAAGCTAAAGATGCTA
AGGCTGTTATAGATGCCCTGGCGGACGCTGTCACCCTGACCACCCCCTCT
CATCGCTACTTGATCGGAGGCAGTTTTGAGGACTACGTAAACAACGCCTG
GCTGGGCTACTTCCCCTCGAAGTGGACTGACTCTACAGAGAGGAACGAGA
GGGAAGACGACCCTAAACCTGCCATGCTGCAGAAAACTACATAATCCGGA
CTTCACGCACACCCGGCTTGTTCTTCCTACTGCATAACCAAGGCGGCCCT
GGAGTCTTTCTCGGATGCGCTCAGGCATGAGATGCACAAGTGGGGTGTGA
AAGTCGTCCTGGTAGAGCCATGTGCCTTTTCTACGTGTACGGATATTGTT
AAGGCGGAGACCTACAATAGGCTCATTCAGAACCTGCGGGACAACATAGA
AGAAGCTGTGAAGGAGGATTATGGCATGGAGTACGTCGACTTCAAGTTGG
GAAAGATACGAGCAGCTCATTTTGCCCCATTCCAAGCTAAAGATGCTAAG
GCTGTTATAGATGCCCTGGCGGACGCTGTCACCCTGACCACCCCCTCTCA
TCGCTACTTGATCGGAGGCAGTTTTGAGGACTACGTAAACAACGCCTGGC
TGGGCTACTTCCCCTCGAAGTGGACTGACTCTACAGAGAGGAACGAGAGG
GAAGACGACCCTAAACCTGCCATGCTGCAGAAAACTACATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97216gene:BL97216Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97216_cuf4transcript:BL97216_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97216_cuf4-E1BL97216_cuf4-E1-1564476830-233723Branchiostoma lanceolatumexon
BL97216_cuf4-E2BL97216_cuf4-E2-1564476830-233720Branchiostoma lanceolatumexon
BL97216_cuf4-E3BL97216_cuf4-E3-1564476830-233718Branchiostoma lanceolatumexon
BL97216_cuf4-E4BL97216_cuf4-E4-1564476830-233716Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000054genomeSc0000054:539405..541585 -
Properties
Property NameValue
Transcript idBL97216_cuf4
Biotypeprotein_coding