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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97213_cuf3 >transcript:BL97213_cuf3-protein ID=transcript:BL97213_cuf3-protein|Name=transcript:BL97213_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=128bp
MLQLIFSIMQWTLCRGKQEQRLEAADQLPQPGNWGCGAFGGDPQMKAMLQ
WMAASHADAPELIYYTFRNKDVEQLEEVCEQLRGRGWLVADLCQAVQEYA
ETTRPLVSKKTQDTAPAFEDLFSFLMEK Run BLAST on NCBI mRNA from alignment at Sc0000054:386506..392238+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97213_cuf3 ID=transcript:BL97213_cuf3|Name=transcript:BL97213_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=5733bp|location=Sequence derived from alignment at Sc0000054:386506..392238+ (Branchiostoma lanceolatum)
TGTTGCAAACTTCTCAAAGATCACAATCGTTGCCAAGTATGAACAGTTTC
TGTGAAAATGTTGCAACTGATATTCTCAATCATGCAATGGACTCTGTGCA
GAGGCAAGCAGGAACAACGGCTGGAGGCAGCAGACCAATTGCCACAGGTA
TGATTGTCACAGCTACATTCCAAAATGTGAAGGTGGGAAGGAGAGCATTA
GCTTTCTGCTGTCATTTGTTTGGAGCATGAAGAAGAGCATAGCTTTACTC
TCACTGGCTACTGGTATAATCTTAACAAGCCACACAGGCAGGAATGATGG
CACAGAAAGCTTTAATGCTCCCCGCGTTGTACTGTATTTCAGGTGTATCA
CTTTGGCTGAAATCTAAGAAAACAACCATATGTTTTTCAGGACTGTGATA
GGAAACAACATTTCTTTAACTAGGCCTGATTTGCATGGCCTAATTGTTGA
CTAACATTTCTCCAACATCTATGGAAATTGTGTCTCCAGGAAACTGGGGC
TGTGGTGCCTTTGGTGGTGATCCACAGATGAAGGCCATGCTGCAGTGGAT
GGCTGCCTCACATGCCGACGCACCTGAACTCATTTACTACACCTTCAGAA
ACAAAGATGTTGAGCAGGTATATCTACTTTTTCATGCAACTAAAGTATAA
TGTGCAAGTTAAATGTAATTCCAACCCATAGCCTCTTCTCTGGTCGTAGG
GCCACTGTCTTTAGGGAACAGTTTTAGTGGGCAGAGCCCCTCCCTCTCCT
TCCTCCACCTTTTAACTTCCTCAAACACATGTAGTTGCATTTTTATGTTT
CATTTTGCATTTCTATCTTTTGATGGAGGTTGGGGGGCTATGGGATTGGT
CTATACTTAGTATTCAGTATCTACCTTCTTGCCTTGATTATTGTAGAACA
TTCTGTAAAACTGATAGTAATACTTATGTTGTTTGCCTTGTTATTTTTTT
TACTTTCTTACAGCTTGAAGAAGTCTGTGAACAGTTGAGAGGTAGAGGCT
GGCTAGTAGCCGACTTGTGCCAAGCTGTGCAGGAATATGCCGAGACGACA
AGACCCTTGGTTTCTAAGAAAACGCAAGACACAGCACCTGCCTTTGAAGA
CTTGTTTTCTTTTCTGATGGAAAAGTGAAGACCCGTTGCGTATGTTTTAT
CAAACTTGAAGTGTATGGAGCCTTAACTACATCCTACAAATTATCATAGC
AGTCTCTGGTCAGCGTTCTGATATCGTAATGTTACGACTAACATGGGACA
TGTCAAACTGGTGGAGCTGACAGCCAGCAAGCCGTGGTAGATAGTCAACA
ATTTCCTCTTTCTCTCACTCGGCAAGTTCAAAACATAACACTGAAAAGCA
ACGTTGGCGGCAAACTACTAGCCTTTACAATCTATCGCTGTCGTGGGCTG
AAGGGCCCCTCCGTTATGAGCCTGGTTTTAGTCAGGCTAGTACTAGAACT
GGAAAATGGTAGCAACCAGAAAACAGTGATTAGCAAATTAGATATGACAA
TATGGAAACACGGACCCAAGACTGCTATGAAGGCAAAATCTACAAACCAT
GTTGCTGGACACTGATAAACAACCACACATGACATACATGTACCAGTCTT
TCATTATGGCAGTGATGTAGAATTGTGCAGATTTCAGTATCCATCACTTC
ACTAGTATTGTATTTAGTCCCCATGTACTGTAAATGTTTGCATTGTCATG
GTAACCTCTTCACAGTGAACTTAAAACCACCACAAAAATGCTTGTTTGGT
CTTCTGCCTGCCTACCACAGCTGTGAACACTCCATTTTCTCCCTAGGCCT
ACTGCAAAATTTGATTGCATTAATTTTACAGAATAATCTTACATGTGGGT
GACATCACTTCTACGTACAGCATACAACTTTCTAGCTGCTTTCTCTCAAA
AATTCCCTAATCTGAGTCAAATTTGTCATGACTCAAATAGTATTAATACT
TTTAAGATTGTTGCATAGCATATCACTTTTAAATTAAAAACTTAGTTACG
AGTTAAAGCTTGACGTAAACTGTTGAGATGGTGTTTTAAACTCTTAAGAT
TTCAGACATTTGTTGTATCAATGTTTTGTTGGGAGATGTGCTGTTCTAAT
GGAGTCAGGTTTTGCTTATCTAACAGTTCCAAATGAATGTATCTTTTGTT
GTGAAGTTTCAAGATGGATAGATATAATTGTTCCTGTAACTGAAAACTAA
CTAGCATTACATACTATAATAATTATGCTTGAAAGGGGCATTATTTGTAC
TAGTACTGCAATTTTATTTTCAGATTTGTGTGCAAAGATATACTAGTAGT
TGGTGAAAGTAATAGTATATTAGCTGGATTTGTAACTTTGTAGTATATTC
AGGGACAGAAATTTCACTTTCCTGTTGAAAAAGTGTCCACTGGCATTAGT
AATGGCAGCCATTAGGTGAGTAGAGTCAATTCCACGTTACCGAGAGGGTG
TTTGTTGCCTTTTGTTCTAACATTTGCAAAACCTTTGTAACAATCTAAGG
GAGATAGGTGACTGTTTAGAACAATTTCCAACATTCATTTGATGTTCTAA
ATAGTTTCTGCTGTGTTCCAACATGTTAGACAAATTTCTAACATTGCACA
TGTTATTTCTATTATTTTCGAAACTGTTGGAAAATAGGTTGATCATTTGT
TCCTACATGTTCCAACATTATAACAACATGGTATAACTGGGTCAGTGGGA
TGGGAACAGGGCAATTCACACATCCCTTCAAAGTATAGGGGATTAGGCCT
GGGTGCCATGTATAGACACCTCAAGAGAAAGGTCCAGACGTGAAATCTAA
AAATATACAGAGGCAGACAATAGAGTGCGATTAGCACCTACTTTTATGGG
GGCAATAACCCAAATCTACCATTTGAAAAATGATGCAAATTGTTCCAACA
TGTTCGAACAGTGAAACAATCACATAGATGTTTGAAAATTGTTCTAAATA
AAGAGATATTTGAGCAATTATTTCCAAATAGTTCCAACATATATATATAA
GTTCAAACATGTTCAAACTTTCATTCTTGATTGTTTGAACAATTTAGAAC
TATTTTGACTGGAATAGTCTTTTATCTAAAATTGTTTGAACTCACTAGCA
ATATTACCTGAAAACCCTCTCGGTGACATGGAATTGACTCTACATGTAAC
TTTGATGTTTGGCATACAATTTTACAAGTGCATTTTCAAACTAACAATGT
GCCTATCATGGTTTTCCCATCACTTTTGAAAGTGCTGTTCTGTTGATAAA
AGCACTGGGTGTCTAATACACTTGTTTATGAGCATTACATAATATTGTAT
ACTGGCTTTGCTCTTGTTGCCTCACCCACCTCAACACATGAAAAACAGTC
ACCATTTTCTTTATTTTTGACCCGTGAAATCTCCTTGTGCAATTTATGAT
GTTGGTGTAGCAGTGCTCAGTAGCAGCCCTCGACTTTCCAATATTCTGTG
GTGTAATTTATTGTACTACTGTTATATATATGCTGCTATCATCCATCAGG
CAAAAAGTAAACAATTAAACATCCACTAAATCCATTTAAATCTGTCATTA
GAAATAAACCAATCAAAGGCTACATACCCATAAATCCATATTTATACACT
GTCATGTTCACTGTTTGCCATGATTCTATGTTCACAATTTTCGCAGTGAC
CTCTTTACTGGCGGAACCTAAAACTACAGTGAAAATTTTTGTTTTGTCTT
CTTCCCACCCACCCCCTTGTTTCAACCACAAGCTTAAAACCACCGCGAAC
ACTCCATTTTCTCCCTGCTACAATCAAATCCCTGCAAACATTAAAAGTAA
CTTGTACATTGGGGTGAAAGATAACCATGTGCATGTTAAAGTCATTTATA
TATGAAAAGACTATTCTTACTTGTAGTTGTACAAACAGCATTTTGTTGTA
AATGCTGCAATATGAACAACTTTTTAGTTTATAAACAGCATTAAAGAGCA
GAATAACATAATGAAAATAAAAGGTAGTCATTATCATTTTCAAGGAGTCA
TGAGTTATTGTCAAGTTTTAATGGCGAATAAGATTGTTTGTCTTGAGTTA
AAGACAAAGATGTATATGTAAGATGACAATGTAGACTAAGTATATAATGT
TCACTCTGTGCCAGTATACATGCTGTACATACTAGAGGACTTTTTGTGAC
TCAATGAGGAAAAAGTTTGCAATATATAAATGTAAAAGGTTTTTCAGAGC
TTTGTATCACAGTGTGTAATCATGTGTTTGCATTAACTGGTGGGAATACA
AACTTTACTAATTAGTGTTAAGGCACGTTTCCTACCTCCCCATGTATGTT
CAATTTCAGTGANCAATTTCAGTGGAGATTTGCACTTAACATTGTTCAGC
TTGGACAAGTACTAGTAGTGGGATGTTTGAAAATCACCATGCCATAAGGA
TATACATTGTACAATGCCATGTACCAGTCCAGCCTTGCCATTGGCTGTGT
GTATCAAGAAGTGTACTGTACATAAACTTGGCAGAAAAAGTTTTGGTAAC
TTGATTTTGGTGGATCATATGTCTAACAGTCTGTGAATACTTTGTCATAT
GCATTGTTAAGATTATTTATTTCCCTTCACAATGATATCCCATTTGTAAT
GATCGTACATTCATGGGTTGAGCACCAAGGCTACTTATGTCAGTAGGTCA
CGAAAGGAAAGTGATGAAATTTCCCTTCATCACATGTCCGTTGTTTTTAA
TGATCTAAGTATTATGCATCAAATCATTAGAAACTTTGCATTTTTTTTTC
TTTAAAATTATACCTTGTTATGATTATGCTTGAATGCCACAACTGGTTTC
GTTGTCCCAAAAAAAAAGGGTGCCGAAATCCCTCTACCAAAGTCAGGCAC
TATGTTGGCAGGGGAATTTTGGCATTTTTGTTTTGTAATAGTTACTAGTA
GCTCTGGTGTTTGACTTTGATTTGAATGTAGGACCATTAAAAATATGGTA
TCATTGAATACTATATAAACTTTCCAATGAAAATGTAGCACTTATATACA
GTTAATAAAGTAATTATGGAGAAATGATTGATCAAATCAGTTTCCAAACT
TTTTGTGCTAAGTATGTTGATTGACCACTATGACCAGGCGAGACATTTCA
GATCTGTACTTCCCCCTTGCTTTAATAGAATTACAATTTAAAACATCTTA
GATTGAAAGATTTGTAACTTTCAGGCCAGTGTTACCAGACAGTTCAATCG
GTTACATGTAGGTCTTGGATTTAAACTAATAATGCATGAAGTACAAACAT
GTTAACAGTTTGAGGAAAAGTTTGTAGCTCTTAGGGTATACAATTTTTCT
GTTAGTGAATATGCCAAGATTTTGTCCCATAGTTATCATTTGGTCCCTTG
CCCAAGGTTTAACTAAATAAAAGTTCAGAGAACCAAGGAAATGAGTTGGT
ATGGCCCTAGTAGCCATCATATAGTGGATACAGGCACAATGTACTCGTCA
TATGGCTATTCCACAAATTTTGGGGGAGTGAGGACGATTTAGTTAAACTT
CCCACAATTGATGTAGTTTTAACAGAATGAGTACATTGTATTTCATTTCT
CCGTACCCCACCAACACATTGAGTCTTATCAATTAACCAATATATATGTG
TATGCCAGGTTTAGATAATTCGTAATATCTGTGACTTTTATTCACATTCA
CTGTTACACTGTGAACAGTAACAAAGCTGCTGGGGTGTACATGTACATGT
TAACTAAATAAAAGAGATTAATTTGTATCACCT Coding sequence (CDS) from alignment at Sc0000054:386506..392238+ >transcript:BL97213_cuf3 ID=transcript:BL97213_cuf3|Name=transcript:BL97213_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1161bp|location=Sequence derived from alignment at Sc0000054:386506..392238+ (Branchiostoma lanceolatum)
ATGTTGCAACTGATATTCTCAATCATGCAATGGACTCTGTGCAGAGGCAA
GCAGGAACAACGGCTGGAGGCAGCAGACCAATTGCCACAGCCAGGAAACT
GGGGCTGTGGTGCCTTTGGTGGTGATCCACAGATGAAGGCCATGCTGCAG
TGGATGGCTGCCTCACATGCCGACGCACCTGAACTCATTTACTACACCTT
CAGAAACAAAGATGTTGAGCAGCTTGAAGAAGTCTGTGAACAGTTGAGAG
GTAGAGGCTGGCTAGTAGCCGACTTGTGCCAAGCTGTGCAGGAATATGCC
GAGACGACAAGACCCTTGGTTTCTAAGAAAACGCAAGACACAGCACCTGC
CTTTGAAGACTTGTTTTCTTTTCTGATGGAAAAGTGAATGTTGCAACTGA
TATTCTCAATCATGCAATGGACTCTGTGCAGAGGCAAGCAGGAACAACGG
CTGGAGGCAGCAGACCAATTGCCACAGCCAGGAAACTGGGGCTGTGGTGC
CTTTGGTGGTGATCCACAGATGAAGGCCATGCTGCAGTGGATGGCTGCCT
CACATGCCGACGCACCTGAACTCATTTACTACACCTTCAGAAACAAAGAT
GTTGAGCAGCTTGAAGAAGTCTGTGAACAGTTGAGAGGTAGAGGCTGGCT
AGTAGCCGACTTGTGCCAAGCTGTGCAGGAATATGCCGAGACGACAAGAC
CCTTGGTTTCTAAGAAAACGCAAGACACAGCACCTGCCTTTGAAGACTTG
TTTTCTTTTCTGATGGAAAAGTGAATGTTGCAACTGATATTCTCAATCAT
GCAATGGACTCTGTGCAGAGGCAAGCAGGAACAACGGCTGGAGGCAGCAG
ACCAATTGCCACAGCCAGGAAACTGGGGCTGTGGTGCCTTTGGTGGTGAT
CCACAGATGAAGGCCATGCTGCAGTGGATGGCTGCCTCACATGCCGACGC
ACCTGAACTCATTTACTACACCTTCAGAAACAAAGATGTTGAGCAGCTTG
AAGAAGTCTGTGAACAGTTGAGAGGTAGAGGCTGGCTAGTAGCCGACTTG
TGCCAAGCTGTGCAGGAATATGCCGAGACGACAAGACCCTTGGTTTCTAA
GAAAACGCAAGACACAGCACCTGCCTTTGAAGACTTGTTTTCTTTTCTGA
TGGAAAAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000054 | genome | Sc0000054:386506..392238 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97213_cuf3 |
| Biotype | protein_coding |
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