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transcript:BL97212_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97212_cuf1
Unique Nametranscript:BL97212_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97212_cuf1

>transcript:BL97212_cuf1-protein ID=transcript:BL97212_cuf1-protein|Name=transcript:BL97212_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=156bp
RNERSPNKMAEGQEDSGQQVIFPCDLPTWSDLKLLLQGLKTVKTSDDLVS
ALDHVYEVAHSRQKVPKRGKHSRRARGRKPPKRERDSHVSGLAWFLQNVL
DERERRDFFGKTLPCIADRALELETLKPADGLNVSQRQRGENEYLASVRD
FLSDRM
Run BLAST on NCBI

mRNA from alignment at Sc0000054:352614..353433+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97212_cuf1 ID=transcript:BL97212_cuf1|Name=transcript:BL97212_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=820bp|location=Sequence derived from alignment at Sc0000054:352614..353433+ (Branchiostoma lanceolatum)
ATCGAAACGAACGGTCTCCAAACAAAATGGCTGAAGGACAAGAAGACAGC GGACAACAAGTCATCTTTCCCTGCGATCTACCCACCTGGAGTGACCTCAA GCTGCTTCTGCAGGGCCTGAAGACGGTGAAGACATCCGATGATCTAGTCT CGGCGCTAGATCACGTTTACGAGGTTGCCCACTCTCGCCAGAAGGTACCG AAGAGGGGTAAACACTCTCGCCGGGCGAGGGGGAGGAAGCCCCCGAAGAG GGAGCGAGACAGTCACGTATCGGGACTGGCATGGTTCCTACAAAACGTCC TTGACGAGCGAGAGAGACGGGACTTTTTCGGAAAGACCTTGCCGTGTATA GCAGACAGGGCTTTGGAACTGGAGACTTTGAAACCAGCAGATGGACTGAA CGTTAGCCAAAGACAGCGAGGTAAGGTTTGGTGGGGGGAGGGCAACAAAG CTAGTAGCAACAAATCCGCGCTGCACTGCATAATGATATAATATTTCATT GACATTTATTACGTTCAACTGATTGTATATTTGCTACATAAGACATTTAC ATTTTTTTGCAAGCCACAGGAAATTCTGATTGCCATGTCATTTGTTTATT ATATGCTCCATGTTTATTTGTTTATATGGTGACCTTGTGGTTAGGGTTGT TGACTCGGAACCCGGAGGTACCGAGTTCGAATCCCTGACAGGTCCCAATG TTGTGCCCTTGGGAAAAGGCACTTAACACCTATTTCCTTACTCTACTCAG GTGAAAATGAGTACCTAGCTTCAGTTAGGGACTTCCTCTCGGACAGGATG TAAAGTTGGAGGTCCTGTGT

Coding sequence (CDS) from alignment at Sc0000054:352614..353433+

>transcript:BL97212_cuf1 ID=transcript:BL97212_cuf1|Name=transcript:BL97212_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=942bp|location=Sequence derived from alignment at Sc0000054:352614..353433+ (Branchiostoma lanceolatum)
CGAAACGAACGGTCTCCAAACAAAATGGCTGAAGGACAAGAAGACAGCGG
ACAACAAGTCATCTTTCCCTGCGATCTACCCACCTGGAGTGACCTCAAGC
TGCTTCTGCAGGGCCTGAAGACGGTGAAGACATCCGATGATCTAGTCTCG
GCGCTAGATCACGTTTACGAGGTTGCCCACTCTCGCCAGAAGGTACCGAA
GAGGGGTAAACACTCTCGCCGGGCGAGGGGGAGGAAGCCCCCGAAGAGGG
AGCGAGACAGTCACGTATCGGGACTGGCATGGTTCCTACAAAACGTCCTT
GACGAGCGAGAGAGACGGGACTTTTTCGGAAAGACCTTGCCGTGTATAGC
AGACAGGGCTTTGGAACTGGAGACTTTGAAACCAGCAGATGGACTGAACG
TTAGCCAAAGACAGCGAGGTGAAAATGAGTACCTAGCTTCAGTTAGGGAC
TTCCTCTCGGACAGGATGTAACGAAACGAACGGTCTCCAAACAAAATGGC
TGAAGGACAAGAAGACAGCGGACAACAAGTCATCTTTCCCTGCGATCTAC
CCACCTGGAGTGACCTCAAGCTGCTTCTGCAGGGCCTGAAGACGGTGAAG
ACATCCGATGATCTAGTCTCGGCGCTAGATCACGTTTACGAGGTTGCCCA
CTCTCGCCAGAAGGTACCGAAGAGGGGTAAACACTCTCGCCGGGCGAGGG
GGAGGAAGCCCCCGAAGAGGGAGCGAGACAGTCACGTATCGGGACTGGCA
TGGTTCCTACAAAACGTCCTTGACGAGCGAGAGAGACGGGACTTTTTCGG
AAAGACCTTGCCGTGTATAGCAGACAGGGCTTTGGAACTGGAGACTTTGA
AACCAGCAGATGGACTGAACGTTAGCCAAAGACAGCGAGGTGAAAATGAG
TACCTAGCTTCAGTTAGGGACTTCCTCTCGGACAGGATGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97212gene:BL97212Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97212_cuf1-E1BL97212_cuf1-E1-1564476830-233329Branchiostoma lanceolatumexon
BL97212_cuf1-E2BL97212_cuf1-E2-1564476830-233332Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97212_cuf1transcript:BL97212_cuf1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000054genomeSc0000054:352614..353433 +
Properties
Property NameValue
Transcript idBL97212_cuf1
Biotypeprotein_coding