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transcript:BL97204_cuf11 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97204_cuf11
Unique Nametranscript:BL97204_cuf11
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97204_cuf11

>transcript:BL97204_cuf11-protein ID=transcript:BL97204_cuf11-protein|Name=transcript:BL97204_cuf11|organism=Branchiostoma lanceolatum|type=polypeptide|length=329bp
RKSCHTGIGKTSGWIIPTGWLVDQDFVHTDGQTSLVQAVGHFFSQSCVPG
AKSPEYDPQNTNPSNLCSLCAGAGEDHCVRNKNEPYYGYAGAFRCLAEGS
GDVAFINHLTVQDNTDGHNPENWAAGLRSNEFELLCTDGSRRPVDQWREC
SLARVPSHAVMTSNDRNQEWVDRAVQLLKNTQDMFGTDENERGFQMFDSA
SFGGHDLLFRDDTHHLVEVGSKDSWEKWLGQEYLRCIRSHHAVEPVQPHS
TLRWCTISSQEQQKCQEMSQHVSRNLNHRLECVQGQSSEDCMYKISHHQA
DVITLDGGDIYTAGSEHNLVPVMGEDYGN
Run BLAST on NCBI

mRNA from alignment at Sc0000043:1265847..1268209-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97204_cuf11 ID=transcript:BL97204_cuf11|Name=transcript:BL97204_cuf11|organism=Branchiostoma lanceolatum|type=mRNA|length=2363bp|location=Sequence derived from alignment at Sc0000043:1265847..1268209- (Branchiostoma lanceolatum)
GGCGTAAGTCCTGCCACACCGGTATCGGCAAGACGTCCGGCTGGATCATC CCCACCGGCTGGCTGGTAGACCAGGACTTTGTTCACACCGATGGTCAGAC TAGTCTGGTTCAGGCTGTGGGACACTTCTTCAGCCAGAGCTGTGTGCCTG GTCAGTATGTCATTCTTGTAGTCTTGGATTACTTCTTGTTAGCAGGATCT GTTTAGTCCAGAATGAGAACTTTTAAAGAAAAAGTTCTACACCTCTATAT TAGTCATTATTGGCACTTAAATGTTAACTGCATGTAAATGTTTTCAGCTA GACGAACATTTGATATCTTGAAATGGTTTCCATCAAACCTTGTAGATTCG GCACTGAATATACCTCTATTTACACAAAGGTGCCAAGAGCCCTGAGTACG ATCCCCAGAACACCAACCCCTCCAACCTGTGCTCCCTGTGTGCTGGTGCT GGAGAGGACCACTGTGTGAGGAACAAGAACGAGCCGTACTACGGATATGC TGGGGCATTCAGGTATTCAGTCATTCTTTCAGTTATTTTACCACCAGAAC ATAGCTCAAGTTCGTGATCTGTTTGTCAGGTGTTCCTTGATACATACAGG CTCATGGTTTGATTTGCAAATATTTGAATGGATTTATGATGTTCACATGA TTATCGATAGTTTGCTAAACCTAATCTTGATATGTGGTTGTCCCCTCCAG GTGCCTTGCTGAGGGATCCGGTGATGTTGCCTTCATCAACCACCTGACCG TCCAGGACAACACTGATGGACACAACCCTGAGAACTGGGCCGCTGGCCTG CGCTCCAACGAGTTTGAGCTGCTGTGCACGGATGGTTCCCGCCGTCCCGT GGACCAGTGGCGCGAGTGCAGCCTGGCCCGTGTTCCGTCCCACGCTGTGA TGACGTCCAACGACAGGAACCAGGAGTGGGTGGACAGGGCAGTGCAGCTG TTGAAGAACACTCAGGTGAGAAATCTGAAGAATCTGGGTAAAATTGAGTA CTGTAAATTCATTTACATTTGCGGTGGTTTTATGTTGCAGTTGGAGGGGT AAGAAGGTTTTGGCTGTGTTATAAATTCTCAGTTTAAACAATTCTACAGT AGAGTAGTCATAAAAAGGAGACATATTTACGGTGCCATGACTTTGCAGTA CAGCGACCACTGCGAAAAACCACAAAATTAAACCACTGCAAAAGTTTCAT GATTTACAGTGTATTGACCATATCCTCATCTGTGTATTGTAGAGCTGAAA GAAGGTGTTTTGAAAATCACCATTTCCATCCACAGGACATGTTTGGTACG GATGAGAACGAGCGTGGCTTCCAGATGTTTGACTCCGCCTCCTTCGGCGG CCACGACCTGCTGTTCCGTGATGACACCCATCATCTGGTGGAGGTGGGCA GCAAGGACAGCTGGGAGAAGTGGCTGGGACAGGAGTACCTGCGCTGTATC CGCAGTCACCATGCTGTGGAGCCAGTCCAGCCTCACAGTAAGATCAAGTC TTTATTTCGAGCCAATGCTTTGAAAAATGCAAGCATTCTGTTGTTGAATC ATTGTGAATTTTTTAATTTTCAAGTGCTCACAGAAAGTACTATTTTGTTG CACAGGCACCTTGCGCTGGTGCACCATCTCCAGCCAGGAGCAGCAGAAGT GCCAGGAGATGAGCCAGCATGTCAGCAGGAACCTGAACCACAGGCTGGAG TGTGTACAGGGCCAGTCTAGTGAGGACTGCATGTACAAGATCTCTCACCA CCAGGTGAGGAACACAACAGTTTATATACATATTATGATACATCTTTTAC AACAGAAAGCAGAATTAACTTCTAACATCCTGCAACGTACATTTATCAGG CGCATGAAGAAAGCAGACATTTCAATGTCTACATTAAACAAATTTCATTT GGGAAGTTTTGTGTTATGAGGATCAGCGTTTAACAGTGCCAGTAATAGAA CAGTATAGGATGTATGTCTTACAGCAAAGATTCTTCTAGTGCCAACACAT GTGTTAGTGTTTAATAATGAACTGCGACCTCAATGACGTCATCGCATAAG GGTCATGTGACCCACCCGTCACTCCGTTCCATCGAGTCAGGCGGCCATGT CACAACATCCATGTTCCTAATAAACATCTGAAGTATCAGGTAACATCCCC GAGCAGAGTCACTCTTTTGCGCCTCTTGGCTACTTACTGACGTAGTTGCT TGTTAGTTTATGGTACTGGGATACGTAACTGTACTTCACATGTTTTCATC ATTACATTTGGTTCAATCTTCAGGCTGATGTGATCACCCTGGATGGGGGA GACATCTACACTGCCGGATCTGAGCACAACCTTGTGCCGGTCATGGGAGA GGACTATGGAAAT

Coding sequence (CDS) from alignment at Sc0000043:1265847..1268209-

>transcript:BL97204_cuf11 ID=transcript:BL97204_cuf11|Name=transcript:BL97204_cuf11|organism=Branchiostoma lanceolatum|type=CDS|length=5922bp|location=Sequence derived from alignment at Sc0000043:1265847..1268209- (Branchiostoma lanceolatum)
CGTAAGTCCTGCCACACCGGTATCGGCAAGACGTCCGGCTGGATCATCCC
CACCGGCTGGCTGGTAGACCAGGACTTTGTTCACACCGATGGTCAGACTA
GTCTGGTTCAGGCTGTGGGACACTTCTTCAGCCAGAGCTGTGTGCCTGGT
GCCAAGAGCCCTGAGTACGATCCCCAGAACACCAACCCCTCCAACCTGTG
CTCCCTGTGTGCTGGTGCTGGAGAGGACCACTGTGTGAGGAACAAGAACG
AGCCGTACTACGGATATGCTGGGGCATTCAGGTGCCTTGCTGAGGGATCC
GGTGATGTTGCCTTCATCAACCACCTGACCGTCCAGGACAACACTGATGG
ACACAACCCTGAGAACTGGGCCGCTGGCCTGCGCTCCAACGAGTTTGAGC
TGCTGTGCACGGATGGTTCCCGCCGTCCCGTGGACCAGTGGCGCGAGTGC
AGCCTGGCCCGTGTTCCGTCCCACGCTGTGATGACGTCCAACGACAGGAA
CCAGGAGTGGGTGGACAGGGCAGTGCAGCTGTTGAAGAACACTCAGGACA
TGTTTGGTACGGATGAGAACGAGCGTGGCTTCCAGATGTTTGACTCCGCC
TCCTTCGGCGGCCACGACCTGCTGTTCCGTGATGACACCCATCATCTGGT
GGAGGTGGGCAGCAAGGACAGCTGGGAGAAGTGGCTGGGACAGGAGTACC
TGCGCTGTATCCGCAGTCACCATGCTGTGGAGCCAGTCCAGCCTCACAGC
ACCTTGCGCTGGTGCACCATCTCCAGCCAGGAGCAGCAGAAGTGCCAGGA
GATGAGCCAGCATGTCAGCAGGAACCTGAACCACAGGCTGGAGTGTGTAC
AGGGCCAGTCTAGTGAGGACTGCATGTACAAGATCTCTCACCACCAGGCT
GATGTGATCACCCTGGATGGGGGAGACATCTACACTGCCGGATCTGAGCA
CAACCTTGTGCCGGTCATGGGAGAGGACTATGGAAATCGTAAGTCCTGCC
ACACCGGTATCGGCAAGACGTCCGGCTGGATCATCCCCACCGGCTGGCTG
GTAGACCAGGACTTTGTTCACACCGATGGTCAGACTAGTCTGGTTCAGGC
TGTGGGACACTTCTTCAGCCAGAGCTGTGTGCCTGGTGCCAAGAGCCCTG
AGTACGATCCCCAGAACACCAACCCCTCCAACCTGTGCTCCCTGTGTGCT
GGTGCTGGAGAGGACCACTGTGTGAGGAACAAGAACGAGCCGTACTACGG
ATATGCTGGGGCATTCAGGTGCCTTGCTGAGGGATCCGGTGATGTTGCCT
TCATCAACCACCTGACCGTCCAGGACAACACTGATGGACACAACCCTGAG
AACTGGGCCGCTGGCCTGCGCTCCAACGAGTTTGAGCTGCTGTGCACGGA
TGGTTCCCGCCGTCCCGTGGACCAGTGGCGCGAGTGCAGCCTGGCCCGTG
TTCCGTCCCACGCTGTGATGACGTCCAACGACAGGAACCAGGAGTGGGTG
GACAGGGCAGTGCAGCTGTTGAAGAACACTCAGGACATGTTTGGTACGGA
TGAGAACGAGCGTGGCTTCCAGATGTTTGACTCCGCCTCCTTCGGCGGCC
ACGACCTGCTGTTCCGTGATGACACCCATCATCTGGTGGAGGTGGGCAGC
AAGGACAGCTGGGAGAAGTGGCTGGGACAGGAGTACCTGCGCTGTATCCG
CAGTCACCATGCTGTGGAGCCAGTCCAGCCTCACAGCACCTTGCGCTGGT
GCACCATCTCCAGCCAGGAGCAGCAGAAGTGCCAGGAGATGAGCCAGCAT
GTCAGCAGGAACCTGAACCACAGGCTGGAGTGTGTACAGGGCCAGTCTAG
TGAGGACTGCATGTACAAGATCTCTCACCACCAGGCTGATGTGATCACCC
TGGATGGGGGAGACATCTACACTGCCGGATCTGAGCACAACCTTGTGCCG
GTCATGGGAGAGGACTATGGAAATCGTAAGTCCTGCCACACCGGTATCGG
CAAGACGTCCGGCTGGATCATCCCCACCGGCTGGCTGGTAGACCAGGACT
TTGTTCACACCGATGGTCAGACTAGTCTGGTTCAGGCTGTGGGACACTTC
TTCAGCCAGAGCTGTGTGCCTGGTGCCAAGAGCCCTGAGTACGATCCCCA
GAACACCAACCCCTCCAACCTGTGCTCCCTGTGTGCTGGTGCTGGAGAGG
ACCACTGTGTGAGGAACAAGAACGAGCCGTACTACGGATATGCTGGGGCA
TTCAGGTGCCTTGCTGAGGGATCCGGTGATGTTGCCTTCATCAACCACCT
GACCGTCCAGGACAACACTGATGGACACAACCCTGAGAACTGGGCCGCTG
GCCTGCGCTCCAACGAGTTTGAGCTGCTGTGCACGGATGGTTCCCGCCGT
CCCGTGGACCAGTGGCGCGAGTGCAGCCTGGCCCGTGTTCCGTCCCACGC
TGTGATGACGTCCAACGACAGGAACCAGGAGTGGGTGGACAGGGCAGTGC
AGCTGTTGAAGAACACTCAGGACATGTTTGGTACGGATGAGAACGAGCGT
GGCTTCCAGATGTTTGACTCCGCCTCCTTCGGCGGCCACGACCTGCTGTT
CCGTGATGACACCCATCATCTGGTGGAGGTGGGCAGCAAGGACAGCTGGG
AGAAGTGGCTGGGACAGGAGTACCTGCGCTGTATCCGCAGTCACCATGCT
GTGGAGCCAGTCCAGCCTCACAGCACCTTGCGCTGGTGCACCATCTCCAG
CCAGGAGCAGCAGAAGTGCCAGGAGATGAGCCAGCATGTCAGCAGGAACC
TGAACCACAGGCTGGAGTGTGTACAGGGCCAGTCTAGTGAGGACTGCATG
TACAAGATCTCTCACCACCAGGCTGATGTGATCACCCTGGATGGGGGAGA
CATCTACACTGCCGGATCTGAGCACAACCTTGTGCCGGTCATGGGAGAGG
ACTATGGAAATCGTAAGTCCTGCCACACCGGTATCGGCAAGACGTCCGGC
TGGATCATCCCCACCGGCTGGCTGGTAGACCAGGACTTTGTTCACACCGA
TGGTCAGACTAGTCTGGTTCAGGCTGTGGGACACTTCTTCAGCCAGAGCT
GTGTGCCTGGTGCCAAGAGCCCTGAGTACGATCCCCAGAACACCAACCCC
TCCAACCTGTGCTCCCTGTGTGCTGGTGCTGGAGAGGACCACTGTGTGAG
GAACAAGAACGAGCCGTACTACGGATATGCTGGGGCATTCAGGTGCCTTG
CTGAGGGATCCGGTGATGTTGCCTTCATCAACCACCTGACCGTCCAGGAC
AACACTGATGGACACAACCCTGAGAACTGGGCCGCTGGCCTGCGCTCCAA
CGAGTTTGAGCTGCTGTGCACGGATGGTTCCCGCCGTCCCGTGGACCAGT
GGCGCGAGTGCAGCCTGGCCCGTGTTCCGTCCCACGCTGTGATGACGTCC
AACGACAGGAACCAGGAGTGGGTGGACAGGGCAGTGCAGCTGTTGAAGAA
CACTCAGGACATGTTTGGTACGGATGAGAACGAGCGTGGCTTCCAGATGT
TTGACTCCGCCTCCTTCGGCGGCCACGACCTGCTGTTCCGTGATGACACC
CATCATCTGGTGGAGGTGGGCAGCAAGGACAGCTGGGAGAAGTGGCTGGG
ACAGGAGTACCTGCGCTGTATCCGCAGTCACCATGCTGTGGAGCCAGTCC
AGCCTCACAGCACCTTGCGCTGGTGCACCATCTCCAGCCAGGAGCAGCAG
AAGTGCCAGGAGATGAGCCAGCATGTCAGCAGGAACCTGAACCACAGGCT
GGAGTGTGTACAGGGCCAGTCTAGTGAGGACTGCATGTACAAGATCTCTC
ACCACCAGGCTGATGTGATCACCCTGGATGGGGGAGACATCTACACTGCC
GGATCTGAGCACAACCTTGTGCCGGTCATGGGAGAGGACTATGGAAATCG
TAAGTCCTGCCACACCGGTATCGGCAAGACGTCCGGCTGGATCATCCCCA
CCGGCTGGCTGGTAGACCAGGACTTTGTTCACACCGATGGTCAGACTAGT
CTGGTTCAGGCTGTGGGACACTTCTTCAGCCAGAGCTGTGTGCCTGGTGC
CAAGAGCCCTGAGTACGATCCCCAGAACACCAACCCCTCCAACCTGTGCT
CCCTGTGTGCTGGTGCTGGAGAGGACCACTGTGTGAGGAACAAGAACGAG
CCGTACTACGGATATGCTGGGGCATTCAGGTGCCTTGCTGAGGGATCCGG
TGATGTTGCCTTCATCAACCACCTGACCGTCCAGGACAACACTGATGGAC
ACAACCCTGAGAACTGGGCCGCTGGCCTGCGCTCCAACGAGTTTGAGCTG
CTGTGCACGGATGGTTCCCGCCGTCCCGTGGACCAGTGGCGCGAGTGCAG
CCTGGCCCGTGTTCCGTCCCACGCTGTGATGACGTCCAACGACAGGAACC
AGGAGTGGGTGGACAGGGCAGTGCAGCTGTTGAAGAACACTCAGGACATG
TTTGGTACGGATGAGAACGAGCGTGGCTTCCAGATGTTTGACTCCGCCTC
CTTCGGCGGCCACGACCTGCTGTTCCGTGATGACACCCATCATCTGGTGG
AGGTGGGCAGCAAGGACAGCTGGGAGAAGTGGCTGGGACAGGAGTACCTG
CGCTGTATCCGCAGTCACCATGCTGTGGAGCCAGTCCAGCCTCACAGCAC
CTTGCGCTGGTGCACCATCTCCAGCCAGGAGCAGCAGAAGTGCCAGGAGA
TGAGCCAGCATGTCAGCAGGAACCTGAACCACAGGCTGGAGTGTGTACAG
GGCCAGTCTAGTGAGGACTGCATGTACAAGATCTCTCACCACCAGGCTGA
TGTGATCACCCTGGATGGGGGAGACATCTACACTGCCGGATCTGAGCACA
ACCTTGTGCCGGTCATGGGAGAGGACTATGGAAATCGTAAGTCCTGCCAC
ACCGGTATCGGCAAGACGTCCGGCTGGATCATCCCCACCGGCTGGCTGGT
AGACCAGGACTTTGTTCACACCGATGGTCAGACTAGTCTGGTTCAGGCTG
TGGGACACTTCTTCAGCCAGAGCTGTGTGCCTGGTGCCAAGAGCCCTGAG
TACGATCCCCAGAACACCAACCCCTCCAACCTGTGCTCCCTGTGTGCTGG
TGCTGGAGAGGACCACTGTGTGAGGAACAAGAACGAGCCGTACTACGGAT
ATGCTGGGGCATTCAGGTGCCTTGCTGAGGGATCCGGTGATGTTGCCTTC
ATCAACCACCTGACCGTCCAGGACAACACTGATGGACACAACCCTGAGAA
CTGGGCCGCTGGCCTGCGCTCCAACGAGTTTGAGCTGCTGTGCACGGATG
GTTCCCGCCGTCCCGTGGACCAGTGGCGCGAGTGCAGCCTGGCCCGTGTT
CCGTCCCACGCTGTGATGACGTCCAACGACAGGAACCAGGAGTGGGTGGA
CAGGGCAGTGCAGCTGTTGAAGAACACTCAGGACATGTTTGGTACGGATG
AGAACGAGCGTGGCTTCCAGATGTTTGACTCCGCCTCCTTCGGCGGCCAC
GACCTGCTGTTCCGTGATGACACCCATCATCTGGTGGAGGTGGGCAGCAA
GGACAGCTGGGAGAAGTGGCTGGGACAGGAGTACCTGCGCTGTATCCGCA
GTCACCATGCTGTGGAGCCAGTCCAGCCTCACAGCACCTTGCGCTGGTGC
ACCATCTCCAGCCAGGAGCAGCAGAAGTGCCAGGAGATGAGCCAGCATGT
CAGCAGGAACCTGAACCACAGGCTGGAGTGTGTACAGGGCCAGTCTAGTG
AGGACTGCATGTACAAGATCTCTCACCACCAGGCTGATGTGATCACCCTG
GATGGGGGAGACATCTACACTGCCGGATCTGAGCACAACCTTGTGCCGGT
CATGGGAGAGGACTATGGAAAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97204gene:BL97204Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97204_cuf11transcript:BL97204_cuf11-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97204_cuf11-E1BL97204_cuf11-E1-1564476830-210121Branchiostoma lanceolatumexon
BL97204_cuf11-E2BL97204_cuf11-E2-1564476830-210118Branchiostoma lanceolatumexon
BL97204_cuf11-E3BL97204_cuf11-E3-1564476830-210116Branchiostoma lanceolatumexon
BL97204_cuf11-E4BL97204_cuf11-E4-1564476830-210114Branchiostoma lanceolatumexon
BL97204_cuf11-E5BL97204_cuf11-E5-1564476830-210112Branchiostoma lanceolatumexon
BL97204_cuf11-E6BL97204_cuf11-E6-1564476830-210110Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000043genomeSc0000043:1265847..1268209 -
Properties
Property NameValue
Transcript idBL97204_cuf11
Biotypeprotein_coding