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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97197_cuf3 >transcript:BL97197_cuf3-protein ID=transcript:BL97197_cuf3-protein|Name=transcript:BL97197_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=289bp
ECDPGWEGHQCEHDKDECWYETHICHHNCENHDGCYTCSCDDGFQLINST
HCVPSTTANTDSATATPPQTATRSNLLCVAATTSTTDRTTARTTRPTASG
LQTSATTVHMKTTRRPLRTTPATVADGGANHHKADMAIGAGVTVALVLLF
ISLGGFIRYKKKNTSSYQQEMLSYHPPHPRGSLPGYTDTHWRNPVYENLH
EERPKMQTPPPPYCEAAEGFVTLPEMSKGGITHANVVSVGIGSMPVLGTI
PESKELPPPCEAPISLDPRHVGDIAATQRFDCALNEFHR Run BLAST on NCBI mRNA from alignment at Sc0000066:1398479..1400836+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97197_cuf3 ID=transcript:BL97197_cuf3|Name=transcript:BL97197_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2358bp|location=Sequence derived from alignment at Sc0000066:1398479..1400836+ (Branchiostoma lanceolatum)
CGAATGTGATCCCGGTTGGGAAGGCCATCAGTGTGAACATGGTAATATTT
CCTTCATGTTATTAGTTTAAATGAGTTGTCTCGGATTGCAGTAATGGTAA
GATGTTTTAGCAACGATGCCAACAAAAGTTTCCGGGTCCCCGCCAGATGG
TGGGTGTCTATTGTAAGAAGAAAACTTCCTCATTGACGTAACGTTTCTTA
CCATTTGAGGAAAAGTTTTGTTTAAAGCATAGGGCTTTCTTTTGAGAACA
AACTAAACCCTTTTATGCGGAAGTCTTCCTGAAGCCAACCTCTTTATTTC
CTAATACTTGTATAGGGTTTTCATGTCAATGTACCACACACTAACCTTAG
ATTTTTTTAAAGAAGATGTTTGCTTTATGGATTCAGCCGTTTGATGCCCG
AATATCCCCGAAGCAATGTTGCAGAGATACTACTCTATCAATGACCGACA
TGTAAAAACACATCTACAAATACTGTAATACTGTGCTCGGAAAAAGCATA
ACCCCCTTTCCAGAAAAAGTTATGCCTATTCAGCTTTGCTCAATCATGAC
AGAAAAATGGCTACACGGCTACTGATGACCATGTTACAGGTGATATTGTC
ATCAGTATACAACCAACCCAAACGCTAAAAAGTCTAATTTGACACCATCA
CAGACAAAGATGAGTGCTGGTACGAGACTCACATCTGTCACCACAACTGT
GAGAACCACGATGGCTGCTACACGTGTTCCTGTGACGACGGATTCCAGCT
CATCAACTCCACACACTGTGTTCCCTCTACCACTGCCAATACCGACAGTG
CAACGGCGACACCTCCACAGACGGCCACGAGGAGTAACTTACTCTGTGTC
GCTGCCACAACATCAACTACAGACAGGACAACAGCAAGAACCACCAGGCC
GACAGCTAGCGGTTTACAGACGAGCGCCACAACAGTCCACATGAAGACAA
CAAGACGACCGCTGAGGACCACCCCGGCTACCGGTATGCACTCATTTATC
GACCTGAAATTCCACAAACGAGAAGATCTGTTCGGAATTTACATTACATT
TCGGTGCATCTTTCACCCCCCCAAAAAAAAGACTATGAATGTGTGGTGAA
CCCCTCTGTTGAAACTCCGTTCTCGTCAAAAATTCTATTGTTAAAATTTC
CCCTATTAGTTACTTTGCGATAAAGATTGAGTCTCATGTTAACGTTTCGC
TACATTTGTAACGGAATAAATTTCCTTTCTTGTTTTAACGGCACGGGGTT
CGATCCATGTATCAAAAGTGCCAAGCCCATTGGAAAGTTATAAAACAACT
ATAGTTTTCCCTTAAATAAACTGAATAGTTACTGAGATGGCTAAATATCA
CGCGTATGCTGACATCTTCTGTGTATTACAGTTGCAGATGGAGGGGCAAA
CCACCACAAGGCCGACATGGCGATTGGGGCGGGAGTCACAGTGGCCCTGG
TACTCCTGTTCATCTCCCTCGGGGGTTTCATCCGGTACAAGAAGAAGAAT
ACATCATCCTACCAACAGGAGATGCTCTCGTACCATCCACCACACCCTCG
CGGTTCCCTGCCCGGCTACACAGACACGCACTGGAGAAATCCAGTCTACG
AAAACCTGCACGAAGAACGTCCCAAAATGCAAACCCCGCCGCCCCCGTAC
TGTGAAGCTGCTGAGGGCTTCGTCACTTTACCCGAAATGTCCAAGGGTGG
AATAACGCATGCGAATGTTGTAAGCGTTGGAATCGGCAGTATGCCGGTAC
TAGGTACCATCCCTGAGTCTAAAGAGTTGCCACCACCCTGTGAAGCCCCA
ATCTCACTGGACCCGCGGCACGTTGGCGACATCGCTGCGACCCAGCGATT
TGACTGTGCGCTCAACGAATTCCATCGATAAAAACGAATCATTTTATGCT
TTGTGTGTTTTGTTGCACGTGTAAGTTTGTATTATGTTCCCGTTATAAAG
CAAAAGGTAACACAAATCCAGCTTAAGAGGCAGTAACACCGCCAACATGC
CCATGGCCAGTGAGCTAGGGGCTTAACTTGATACACGTCGACGATAAAAA
AGAACCACTGGTGGAAGACTAGGGTTATGAACAAATGAAGAAGGTTCCTG
GCAATGAGTATGAGAGCTTGAAGCGCTGGTGAACTGTAAATAAGATTGTT
AGCTAATCGTCATATCCGCATCATAGCTTAAAGTGGTTGTGTGTATCGTA
GTCAGATATAGATATTCCCATAGAATAAACAGTCCATATCAATTAGGTGA
AATCTTACGTGACACGGCAGACGAAGAAACTGTATACTCATCATTTTTTA
AATGATTGTTTTGATGCACGAAGTGTGACTATATAACTGACACAATAAAG
ATCTGAAT Coding sequence (CDS) from alignment at Sc0000066:1398479..1400836+ >transcript:BL97197_cuf3 ID=transcript:BL97197_cuf3|Name=transcript:BL97197_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2610bp|location=Sequence derived from alignment at Sc0000066:1398479..1400836+ (Branchiostoma lanceolatum)
GAATGTGATCCCGGTTGGGAAGGCCATCAGTGTGAACATGACAAAGATGA
GTGCTGGTACGAGACTCACATCTGTCACCACAACTGTGAGAACCACGATG
GCTGCTACACGTGTTCCTGTGACGACGGATTCCAGCTCATCAACTCCACA
CACTGTGTTCCCTCTACCACTGCCAATACCGACAGTGCAACGGCGACACC
TCCACAGACGGCCACGAGGAGTAACTTACTCTGTGTCGCTGCCACAACAT
CAACTACAGACAGGACAACAGCAAGAACCACCAGGCCGACAGCTAGCGGT
TTACAGACGAGCGCCACAACAGTCCACATGAAGACAACAAGACGACCGCT
GAGGACCACCCCGGCTACCGTTGCAGATGGAGGGGCAAACCACCACAAGG
CCGACATGGCGATTGGGGCGGGAGTCACAGTGGCCCTGGTACTCCTGTTC
ATCTCCCTCGGGGGTTTCATCCGGTACAAGAAGAAGAATACATCATCCTA
CCAACAGGAGATGCTCTCGTACCATCCACCACACCCTCGCGGTTCCCTGC
CCGGCTACACAGACACGCACTGGAGAAATCCAGTCTACGAAAACCTGCAC
GAAGAACGTCCCAAAATGCAAACCCCGCCGCCCCCGTACTGTGAAGCTGC
TGAGGGCTTCGTCACTTTACCCGAAATGTCCAAGGGTGGAATAACGCATG
CGAATGTTGTAAGCGTTGGAATCGGCAGTATGCCGGTACTAGGTACCATC
CCTGAGTCTAAAGAGTTGCCACCACCCTGTGAAGCCCCAATCTCACTGGA
CCCGCGGCACGTTGGCGACATCGCTGCGACCCAGCGATTTGACTGTGCGC
TCAACGAATTCCATCGATAAGAATGTGATCCCGGTTGGGAAGGCCATCAG
TGTGAACATGACAAAGATGAGTGCTGGTACGAGACTCACATCTGTCACCA
CAACTGTGAGAACCACGATGGCTGCTACACGTGTTCCTGTGACGACGGAT
TCCAGCTCATCAACTCCACACACTGTGTTCCCTCTACCACTGCCAATACC
GACAGTGCAACGGCGACACCTCCACAGACGGCCACGAGGAGTAACTTACT
CTGTGTCGCTGCCACAACATCAACTACAGACAGGACAACAGCAAGAACCA
CCAGGCCGACAGCTAGCGGTTTACAGACGAGCGCCACAACAGTCCACATG
AAGACAACAAGACGACCGCTGAGGACCACCCCGGCTACCGTTGCAGATGG
AGGGGCAAACCACCACAAGGCCGACATGGCGATTGGGGCGGGAGTCACAG
TGGCCCTGGTACTCCTGTTCATCTCCCTCGGGGGTTTCATCCGGTACAAG
AAGAAGAATACATCATCCTACCAACAGGAGATGCTCTCGTACCATCCACC
ACACCCTCGCGGTTCCCTGCCCGGCTACACAGACACGCACTGGAGAAATC
CAGTCTACGAAAACCTGCACGAAGAACGTCCCAAAATGCAAACCCCGCCG
CCCCCGTACTGTGAAGCTGCTGAGGGCTTCGTCACTTTACCCGAAATGTC
CAAGGGTGGAATAACGCATGCGAATGTTGTAAGCGTTGGAATCGGCAGTA
TGCCGGTACTAGGTACCATCCCTGAGTCTAAAGAGTTGCCACCACCCTGT
GAAGCCCCAATCTCACTGGACCCGCGGCACGTTGGCGACATCGCTGCGAC
CCAGCGATTTGACTGTGCGCTCAACGAATTCCATCGATAAGAATGTGATC
CCGGTTGGGAAGGCCATCAGTGTGAACATGACAAAGATGAGTGCTGGTAC
GAGACTCACATCTGTCACCACAACTGTGAGAACCACGATGGCTGCTACAC
GTGTTCCTGTGACGACGGATTCCAGCTCATCAACTCCACACACTGTGTTC
CCTCTACCACTGCCAATACCGACAGTGCAACGGCGACACCTCCACAGACG
GCCACGAGGAGTAACTTACTCTGTGTCGCTGCCACAACATCAACTACAGA
CAGGACAACAGCAAGAACCACCAGGCCGACAGCTAGCGGTTTACAGACGA
GCGCCACAACAGTCCACATGAAGACAACAAGACGACCGCTGAGGACCACC
CCGGCTACCGTTGCAGATGGAGGGGCAAACCACCACAAGGCCGACATGGC
GATTGGGGCGGGAGTCACAGTGGCCCTGGTACTCCTGTTCATCTCCCTCG
GGGGTTTCATCCGGTACAAGAAGAAGAATACATCATCCTACCAACAGGAG
ATGCTCTCGTACCATCCACCACACCCTCGCGGTTCCCTGCCCGGCTACAC
AGACACGCACTGGAGAAATCCAGTCTACGAAAACCTGCACGAAGAACGTC
CCAAAATGCAAACCCCGCCGCCCCCGTACTGTGAAGCTGCTGAGGGCTTC
GTCACTTTACCCGAAATGTCCAAGGGTGGAATAACGCATGCGAATGTTGT
AAGCGTTGGAATCGGCAGTATGCCGGTACTAGGTACCATCCCTGAGTCTA
AAGAGTTGCCACCACCCTGTGAAGCCCCAATCTCACTGGACCCGCGGCAC
GTTGGCGACATCGCTGCGACCCAGCGATTTGACTGTGCGCTCAACGAATT
CCATCGATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000066 | genome | Sc0000066:1398479..1400836 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97197_cuf3 |
| Biotype | protein_coding |
|
