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transcript:BL97193_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97193_cuf0
Unique Nametranscript:BL97193_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97193_cuf0

>transcript:BL97193_cuf0-protein ID=transcript:BL97193_cuf0-protein|Name=transcript:BL97193_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=180bp
AADVHIPPGYPQRSATRGSILLAFFVIRPDSDDFVPFPVDTIKMVLQLSQ
PQLQLQQALGSKPITSMVPYPQYLNGATVPGATSATPDEDNPPGNPHGDS
EIPLVAVSTVAAALAIIALTIIVFVCVRKRQRVPIADVYREQAPPPYSDT
PVLQYDYDDSFKRFQATGLDNPIIIKDSKV
Run BLAST on NCBI

mRNA from alignment at Sc0000066:1304392..1308919-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97193_cuf0 ID=transcript:BL97193_cuf0|Name=transcript:BL97193_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4528bp|location=Sequence derived from alignment at Sc0000066:1304392..1308919- (Branchiostoma lanceolatum)
GCGCTGCCGACGTGCACATCCCTCCCGGCTACCCCCAGCGGTCCGCTACC AGAGGCAGCATCCTGCTCGCCTTCTTCGTCATCCGGCCTGACTCCGATGA CTTCGTGCCTTTCCCAGTCGACACCATCAAGATGGTTCTACAACTCAGTC AGCCACAGCTGCAGCTGCAGCAGGCTCTGGGCTCAAAACCCATCACCTCC ATGGTGCCTTATCCGCAGTACCTAAATGGCGCCACTGTTCCAGGAGCTAC AAGCGCTACGTGAGTCATACGTCTGCATACCTTTTTTTTATTGTTTTTAA GAGATACAATTCAGTCTTTTAAACTTCAATTCAGGTTGTCAAGTCCGTTA GACAGCAAATGGATTCAGTCTAAGTGTACTTCAGTTTGTCTGATGGTATG TTTACTNGTCTGATAGTATGTTTACTGTTTATCATTATCGTTACCTCAAG CAGTCCTGATGAAGACAATCCGCCAGGAAACCCACACGGAGACTCCGAGA TCCCTCTGGTTGCAGTCAGTACAGTTGCAGCTGCGTTGGCCATAATTGCT TTGACCATCATAGTCTTCGTCTGGTAAGTTTTTTCCTGACCTATAACTCA CCATTTGGTAGTTAGCTTATTGTTAATCCACTTTAGTCCTTGATGGTACA CATTCCATCATAGTAAAGAAGCCATGGAGCTTAGATGTTAAAAACAAGCA ACAAGGTTAGATTTAGACTAGGATTTGACATAAGAAAAGCCACGTACATA TAACCCTCATTGTTTTTGGATTCATTCAATTCATTCGTTGTGTTTGTCCT CTGGGTATGAATTTGTATAAAGTTGTCATTGTTTTTTTGTTGCAAACCTC AGTTATTCTCATTAGATAATTGCAACAATACGTTCTAACCTGAACTATAG AAGTACAATATAAAAGTACATACAATCACAGGTGCACTTACTGGTATATG TATCTTTCTTACCTACCTGTAGTGTGAGGAAGAGGCAGCGAGTTCCCATC GCCGATGTGTACCGTGAGCAAGCACCGCCCCCTTACAGCGACACCCCGGT ACTGCAGTATGACTATGACGACTCCTTCAAGCGTTTTCAAGCAACGGGAT TAGATAATCCGATCATCATCAAGGACAGCAAAGTCTGAAGTACTAAATGA AAATACATGTGCATAGCATAGATCTCAAGTAGAATAGATGAGTTACAGAC AATACAAGAGTGTCTAGTTTTCGTTATGTGTATACCAAATGACATGGTAC TTTAACCTTTTAAGAATACGTAGTGCCAAGTACAATCCTTTTAATATCAA TGAGTCCTTTTTACATCGTTCAAAGTGACTTAGCTAGTTCCACGGTTTTA CTTGAGTGTGAGAATTGGGAATATCGCCCATCTTTTTACAAGAAGGATTT CATTTCCATTTGAGGTAAATAGTTTGTGTGTGTGTACTGCCCTTGTGTGT GTTTGTGTGCTCAGAAGTGATGGAGATGTTTGACAAAGAAAAGGAATTAT TTATTTCTAAGCGACTAGTCTATCGATAGAGCAGAATATAGTTTACAACT AAGACTGGTTTGAACATGGTATGGTGTACCGCTTATACATTATCTTTGTG TGTGACCCTGTGAAGTGGGCATCGCTTGTGACGTTGTGAATGTGACCTTT GTATTTTCCGTTTCTAAAGGGCCGGTGGAGTTGGTATAGTTACCATTGTT GATTAAGAGTAAACATATCCTGGAGAGGAATCGACTATTTGAGCAACAGA TATGACATCTGTTAGCTTCACAACTTAATCTAGCCATCTATATACATATT TTGATATCTGTTAGCTTTGTATTGTTGTACATTTGCTTGTTTTTCAGTGC ATGTATTGTTTGCGAAAAAATTCTCAATTTTAAAAGTGAGCTAATGTCAA GAATAAGAAAGAAAATGCACACAAATATGTTTGTTGTCATTCCCTTCGCT GCAAATTACCCTACCTTAACCAACATGCAGTCTTTTATGTCCGTCCTATT GAAGTAAGATAGAGTTTCAACAGTTGCATGTGCGGATACACTGCACACAA CCGGGTATTTGCAAGTGACGTTACATCCGCTGGTCTAAAGTCCTGAAGTT CCCATTGAATTAGTATAGATCCTTGCAGAAGCGTAAAAATCAAGGATCAG ATAGTATTAGATCCCGACCTTGTTTGCAACAGATGGGAATGCTAAATACA TGTACTTCCACACGGAATATCTAATACGAATACCAGATCTAGTAAACCCA TACGTTATGCGGACATTAGATCATCTTCTTCTTCTTCTTCTTCCGTATAC TAGACAAAACCCCGCGTGGGGCATAGTGTCTAGGACTTTTGGTCAGAGGC CTTACCCAAGTGTGGCCGGTGGTGGTGGTGCACGCCGTCAACAAGAATAA AAAAAGTGGTGCAAAAAATAACAAACAAAGTAGTGCTGTACATTGCCACA CTAGGTATAGGCTCCTCCCCTTACAGCTGGGTGAAGCCGGGGTAACCATA ATACTTGGCCACCCCAGCTTTAAAGCTATCTGTAGTCTTGGTTTCGATAA GGTGTTGCGGAAGTGCATTCCATTCTATGACTGTTTTGGGGAAAAAGCTT CCTCGGTATGTTTCTGTCTTACAGGCGACTGTGGTAAAACGTTGCTGGTG TCCTCTGGTTATGTTAGTATTTCTTGTGAGGATATTGTGGATGGGGATAG CAATAAGGTTATTGACAGCTTTGTACATAAGTGAAAGTCGGGCAACTTGT CTGCGCTGTTGAAGGGTGGGCCAACCGAGGGTTTGCAGAGTGTNTATTAT TATTATTATTTCTTTATTTCAGGCTCTCACTGGCCCATATGACATAGGGA CAAACATGAAAAACAAAGATTATATACAACATTTTGAGACAAACTAACAA TATTATGGCTATGTGTAGAGGCGGCTCCATAGGTTGGTGAAAAATGAGTT CTTGTAAAAAGAGTCGGACCTAAGTACGGACTGTATAATGGCATTACTAG AATTGAAAATCCTATGTACAAAGGAGTGGCACTGTTTACGCCATCTGGCG TCGAAGGTATCGGTATGATTGCACACGAACATTTCACTTGCGCTGCAAGA TCTTGGGAAACTCATAATTATACGGAAACAATTGTTGTAGGCAATTCGAC ATTTCGACAGAACACTCGAGCGAAAAGAATTCCATAACTGCGCCCCAAAG AGTTGGGAGCAGTGAGACGTGAATAGTGTTTTCTTAATAGTAGGTGAACA AAGACAAAATTTTCGAATTATAGTATTTGCTCGACAATACAGGCCCCTTA GTTGGGCAAGGATACAGTCATCATCACTCAGTCTGTCATTAATAGCAATT CCAAGATATACAAATGATGTCACAAATCTCAGACACTCTCCATACAGTTT GATCGACGGGAGCGGATGTAAAAGTGGCAAACTAGCACTCGGGAAGTACA TGCAGCATGTCTTGTTTACATTGAATAATACATCATTTTCTAAACCAAAG TCCTCACAAGTACTTACAAGTTTTTGCAGAGACTTAAGGCTAGGACATAA CAAACACATGTCGTCAGCGTAAAAAAGATGGTTCACAAGACAGCCTCCTA TATAGCAACCTACTTTAGTACAACTGAGTCTCGAGCTTAAATCATCTATA TATGCATTGAATAGTAGCGGGGATAGCAGACTCCCTTGCCTTACCCCATT TGATACATAAAAGCAGGGAGACAAAACATTGTTCCATCTAATACACATTG TTTGGTTCTGGTACCAATAAACCAGAAACCTCACCAAATACACCGGGACC TTTCTGTCAAGGAGTTTTTTAAATAGGGTCCAATGGTTTACCCTATCAAA AGCCTTGGAGGCGTCTAAAAAACAAGCAAAAACTGGAGAGCCGAGACCCC GGTAGTACTCAATTGTCTGTTTTAAAGTAAATACACACATGTCAAGACCA TGACCACGTTTGAAACCGAACTGATGAGCAGTGGTTTGAAGATATGGCTC TAGCCTGTTCAATAAAACAGCCTCCAGAACTTTGGATAATGCTGATGCAA TTGCTATTGGTCTATAGTTATCACTATCAGAAATATTACCAGTTTTGTTT TTAACAACCGGAATGATGGTAGTATCTAACATACTTTTCGGAATGAAGTT ATGGACAAGCGCGGCTGAAAACAATAGTGATAAGCATATGCTAAGCTTAG GCCCCGCATATTTAAGGTGTTCATTACTGATTTCGTCAGACCCTACCGCT TTTCCATTGGGTAAGTTTCTAATTATATCATATACTTCCACAGCAGAGAT TTGCATCCCCGAATCAAATTCAAAAGGACAACCTGTCGACAAATCAGACA TAACAGTAGGTNAACCTGTCGACAAATCAGACATAACAGCAGGTCTATGT ACCTCACTATTAACAGAGTTCAGCAGTTTATCAAAATGACTCCTCCACAT GTCTGCGATCTGCTCAGCCCCAGAGCAACCATCTATAGTGTTAGGTAATA CAGAATGAGAGGATTTAGTACTACGGAC

Coding sequence (CDS) from alignment at Sc0000066:1304392..1308919-

>transcript:BL97193_cuf0 ID=transcript:BL97193_cuf0|Name=transcript:BL97193_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1629bp|location=Sequence derived from alignment at Sc0000066:1304392..1308919- (Branchiostoma lanceolatum)
GCTGCCGACGTGCACATCCCTCCCGGCTACCCCCAGCGGTCCGCTACCAG
AGGCAGCATCCTGCTCGCCTTCTTCGTCATCCGGCCTGACTCCGATGACT
TCGTGCCTTTCCCAGTCGACACCATCAAGATGGTTCTACAACTCAGTCAG
CCACAGCTGCAGCTGCAGCAGGCTCTGGGCTCAAAACCCATCACCTCCAT
GGTGCCTTATCCGCAGTACCTAAATGGCGCCACTGTTCCAGGAGCTACAA
GCGCTACTCCTGATGAAGACAATCCGCCAGGAAACCCACACGGAGACTCC
GAGATCCCTCTGGTTGCAGTCAGTACAGTTGCAGCTGCGTTGGCCATAAT
TGCTTTGACCATCATAGTCTTCGTCTGTGTGAGGAAGAGGCAGCGAGTTC
CCATCGCCGATGTGTACCGTGAGCAAGCACCGCCCCCTTACAGCGACACC
CCGGTACTGCAGTATGACTATGACGACTCCTTCAAGCGTTTTCAAGCAAC
GGGATTAGATAATCCGATCATCATCAAGGACAGCAAAGTCTGAGCTGCCG
ACGTGCACATCCCTCCCGGCTACCCCCAGCGGTCCGCTACCAGAGGCAGC
ATCCTGCTCGCCTTCTTCGTCATCCGGCCTGACTCCGATGACTTCGTGCC
TTTCCCAGTCGACACCATCAAGATGGTTCTACAACTCAGTCAGCCACAGC
TGCAGCTGCAGCAGGCTCTGGGCTCAAAACCCATCACCTCCATGGTGCCT
TATCCGCAGTACCTAAATGGCGCCACTGTTCCAGGAGCTACAAGCGCTAC
TCCTGATGAAGACAATCCGCCAGGAAACCCACACGGAGACTCCGAGATCC
CTCTGGTTGCAGTCAGTACAGTTGCAGCTGCGTTGGCCATAATTGCTTTG
ACCATCATAGTCTTCGTCTGTGTGAGGAAGAGGCAGCGAGTTCCCATCGC
CGATGTGTACCGTGAGCAAGCACCGCCCCCTTACAGCGACACCCCGGTAC
TGCAGTATGACTATGACGACTCCTTCAAGCGTTTTCAAGCAACGGGATTA
GATAATCCGATCATCATCAAGGACAGCAAAGTCTGAGCTGCCGACGTGCA
CATCCCTCCCGGCTACCCCCAGCGGTCCGCTACCAGAGGCAGCATCCTGC
TCGCCTTCTTCGTCATCCGGCCTGACTCCGATGACTTCGTGCCTTTCCCA
GTCGACACCATCAAGATGGTTCTACAACTCAGTCAGCCACAGCTGCAGCT
GCAGCAGGCTCTGGGCTCAAAACCCATCACCTCCATGGTGCCTTATCCGC
AGTACCTAAATGGCGCCACTGTTCCAGGAGCTACAAGCGCTACTCCTGAT
GAAGACAATCCGCCAGGAAACCCACACGGAGACTCCGAGATCCCTCTGGT
TGCAGTCAGTACAGTTGCAGCTGCGTTGGCCATAATTGCTTTGACCATCA
TAGTCTTCGTCTGTGTGAGGAAGAGGCAGCGAGTTCCCATCGCCGATGTG
TACCGTGAGCAAGCACCGCCCCCTTACAGCGACACCCCGGTACTGCAGTA
TGACTATGACGACTCCTTCAAGCGTTTTCAAGCAACGGGATTAGATAATC
CGATCATCATCAAGGACAGCAAAGTCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97193gene:BL97193Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97193_cuf0transcript:BL97193_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97193_cuf0-E1BL97193_cuf0-E1-1564476830-256887Branchiostoma lanceolatumexon
BL97193_cuf0-E2BL97193_cuf0-E2-1564476830-256884Branchiostoma lanceolatumexon
BL97193_cuf0-E3BL97193_cuf0-E3-1564476830-256882Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000066genomeSc0000066:1304392..1308919 -
Properties
Property NameValue
Transcript idBL97193_cuf0
Biotypeprotein_coding