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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97193_cuf0 >transcript:BL97193_cuf0-protein ID=transcript:BL97193_cuf0-protein|Name=transcript:BL97193_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=180bp
AADVHIPPGYPQRSATRGSILLAFFVIRPDSDDFVPFPVDTIKMVLQLSQ
PQLQLQQALGSKPITSMVPYPQYLNGATVPGATSATPDEDNPPGNPHGDS
EIPLVAVSTVAAALAIIALTIIVFVCVRKRQRVPIADVYREQAPPPYSDT
PVLQYDYDDSFKRFQATGLDNPIIIKDSKV Run BLAST on NCBI mRNA from alignment at Sc0000066:1304392..1308919- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97193_cuf0 ID=transcript:BL97193_cuf0|Name=transcript:BL97193_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4528bp|location=Sequence derived from alignment at Sc0000066:1304392..1308919- (Branchiostoma lanceolatum)
GCGCTGCCGACGTGCACATCCCTCCCGGCTACCCCCAGCGGTCCGCTACC
AGAGGCAGCATCCTGCTCGCCTTCTTCGTCATCCGGCCTGACTCCGATGA
CTTCGTGCCTTTCCCAGTCGACACCATCAAGATGGTTCTACAACTCAGTC
AGCCACAGCTGCAGCTGCAGCAGGCTCTGGGCTCAAAACCCATCACCTCC
ATGGTGCCTTATCCGCAGTACCTAAATGGCGCCACTGTTCCAGGAGCTAC
AAGCGCTACGTGAGTCATACGTCTGCATACCTTTTTTTTATTGTTTTTAA
GAGATACAATTCAGTCTTTTAAACTTCAATTCAGGTTGTCAAGTCCGTTA
GACAGCAAATGGATTCAGTCTAAGTGTACTTCAGTTTGTCTGATGGTATG
TTTACTNGTCTGATAGTATGTTTACTGTTTATCATTATCGTTACCTCAAG
CAGTCCTGATGAAGACAATCCGCCAGGAAACCCACACGGAGACTCCGAGA
TCCCTCTGGTTGCAGTCAGTACAGTTGCAGCTGCGTTGGCCATAATTGCT
TTGACCATCATAGTCTTCGTCTGGTAAGTTTTTTCCTGACCTATAACTCA
CCATTTGGTAGTTAGCTTATTGTTAATCCACTTTAGTCCTTGATGGTACA
CATTCCATCATAGTAAAGAAGCCATGGAGCTTAGATGTTAAAAACAAGCA
ACAAGGTTAGATTTAGACTAGGATTTGACATAAGAAAAGCCACGTACATA
TAACCCTCATTGTTTTTGGATTCATTCAATTCATTCGTTGTGTTTGTCCT
CTGGGTATGAATTTGTATAAAGTTGTCATTGTTTTTTTGTTGCAAACCTC
AGTTATTCTCATTAGATAATTGCAACAATACGTTCTAACCTGAACTATAG
AAGTACAATATAAAAGTACATACAATCACAGGTGCACTTACTGGTATATG
TATCTTTCTTACCTACCTGTAGTGTGAGGAAGAGGCAGCGAGTTCCCATC
GCCGATGTGTACCGTGAGCAAGCACCGCCCCCTTACAGCGACACCCCGGT
ACTGCAGTATGACTATGACGACTCCTTCAAGCGTTTTCAAGCAACGGGAT
TAGATAATCCGATCATCATCAAGGACAGCAAAGTCTGAAGTACTAAATGA
AAATACATGTGCATAGCATAGATCTCAAGTAGAATAGATGAGTTACAGAC
AATACAAGAGTGTCTAGTTTTCGTTATGTGTATACCAAATGACATGGTAC
TTTAACCTTTTAAGAATACGTAGTGCCAAGTACAATCCTTTTAATATCAA
TGAGTCCTTTTTACATCGTTCAAAGTGACTTAGCTAGTTCCACGGTTTTA
CTTGAGTGTGAGAATTGGGAATATCGCCCATCTTTTTACAAGAAGGATTT
CATTTCCATTTGAGGTAAATAGTTTGTGTGTGTGTACTGCCCTTGTGTGT
GTTTGTGTGCTCAGAAGTGATGGAGATGTTTGACAAAGAAAAGGAATTAT
TTATTTCTAAGCGACTAGTCTATCGATAGAGCAGAATATAGTTTACAACT
AAGACTGGTTTGAACATGGTATGGTGTACCGCTTATACATTATCTTTGTG
TGTGACCCTGTGAAGTGGGCATCGCTTGTGACGTTGTGAATGTGACCTTT
GTATTTTCCGTTTCTAAAGGGCCGGTGGAGTTGGTATAGTTACCATTGTT
GATTAAGAGTAAACATATCCTGGAGAGGAATCGACTATTTGAGCAACAGA
TATGACATCTGTTAGCTTCACAACTTAATCTAGCCATCTATATACATATT
TTGATATCTGTTAGCTTTGTATTGTTGTACATTTGCTTGTTTTTCAGTGC
ATGTATTGTTTGCGAAAAAATTCTCAATTTTAAAAGTGAGCTAATGTCAA
GAATAAGAAAGAAAATGCACACAAATATGTTTGTTGTCATTCCCTTCGCT
GCAAATTACCCTACCTTAACCAACATGCAGTCTTTTATGTCCGTCCTATT
GAAGTAAGATAGAGTTTCAACAGTTGCATGTGCGGATACACTGCACACAA
CCGGGTATTTGCAAGTGACGTTACATCCGCTGGTCTAAAGTCCTGAAGTT
CCCATTGAATTAGTATAGATCCTTGCAGAAGCGTAAAAATCAAGGATCAG
ATAGTATTAGATCCCGACCTTGTTTGCAACAGATGGGAATGCTAAATACA
TGTACTTCCACACGGAATATCTAATACGAATACCAGATCTAGTAAACCCA
TACGTTATGCGGACATTAGATCATCTTCTTCTTCTTCTTCTTCCGTATAC
TAGACAAAACCCCGCGTGGGGCATAGTGTCTAGGACTTTTGGTCAGAGGC
CTTACCCAAGTGTGGCCGGTGGTGGTGGTGCACGCCGTCAACAAGAATAA
AAAAAGTGGTGCAAAAAATAACAAACAAAGTAGTGCTGTACATTGCCACA
CTAGGTATAGGCTCCTCCCCTTACAGCTGGGTGAAGCCGGGGTAACCATA
ATACTTGGCCACCCCAGCTTTAAAGCTATCTGTAGTCTTGGTTTCGATAA
GGTGTTGCGGAAGTGCATTCCATTCTATGACTGTTTTGGGGAAAAAGCTT
CCTCGGTATGTTTCTGTCTTACAGGCGACTGTGGTAAAACGTTGCTGGTG
TCCTCTGGTTATGTTAGTATTTCTTGTGAGGATATTGTGGATGGGGATAG
CAATAAGGTTATTGACAGCTTTGTACATAAGTGAAAGTCGGGCAACTTGT
CTGCGCTGTTGAAGGGTGGGCCAACCGAGGGTTTGCAGAGTGTNTATTAT
TATTATTATTTCTTTATTTCAGGCTCTCACTGGCCCATATGACATAGGGA
CAAACATGAAAAACAAAGATTATATACAACATTTTGAGACAAACTAACAA
TATTATGGCTATGTGTAGAGGCGGCTCCATAGGTTGGTGAAAAATGAGTT
CTTGTAAAAAGAGTCGGACCTAAGTACGGACTGTATAATGGCATTACTAG
AATTGAAAATCCTATGTACAAAGGAGTGGCACTGTTTACGCCATCTGGCG
TCGAAGGTATCGGTATGATTGCACACGAACATTTCACTTGCGCTGCAAGA
TCTTGGGAAACTCATAATTATACGGAAACAATTGTTGTAGGCAATTCGAC
ATTTCGACAGAACACTCGAGCGAAAAGAATTCCATAACTGCGCCCCAAAG
AGTTGGGAGCAGTGAGACGTGAATAGTGTTTTCTTAATAGTAGGTGAACA
AAGACAAAATTTTCGAATTATAGTATTTGCTCGACAATACAGGCCCCTTA
GTTGGGCAAGGATACAGTCATCATCACTCAGTCTGTCATTAATAGCAATT
CCAAGATATACAAATGATGTCACAAATCTCAGACACTCTCCATACAGTTT
GATCGACGGGAGCGGATGTAAAAGTGGCAAACTAGCACTCGGGAAGTACA
TGCAGCATGTCTTGTTTACATTGAATAATACATCATTTTCTAAACCAAAG
TCCTCACAAGTACTTACAAGTTTTTGCAGAGACTTAAGGCTAGGACATAA
CAAACACATGTCGTCAGCGTAAAAAAGATGGTTCACAAGACAGCCTCCTA
TATAGCAACCTACTTTAGTACAACTGAGTCTCGAGCTTAAATCATCTATA
TATGCATTGAATAGTAGCGGGGATAGCAGACTCCCTTGCCTTACCCCATT
TGATACATAAAAGCAGGGAGACAAAACATTGTTCCATCTAATACACATTG
TTTGGTTCTGGTACCAATAAACCAGAAACCTCACCAAATACACCGGGACC
TTTCTGTCAAGGAGTTTTTTAAATAGGGTCCAATGGTTTACCCTATCAAA
AGCCTTGGAGGCGTCTAAAAAACAAGCAAAAACTGGAGAGCCGAGACCCC
GGTAGTACTCAATTGTCTGTTTTAAAGTAAATACACACATGTCAAGACCA
TGACCACGTTTGAAACCGAACTGATGAGCAGTGGTTTGAAGATATGGCTC
TAGCCTGTTCAATAAAACAGCCTCCAGAACTTTGGATAATGCTGATGCAA
TTGCTATTGGTCTATAGTTATCACTATCAGAAATATTACCAGTTTTGTTT
TTAACAACCGGAATGATGGTAGTATCTAACATACTTTTCGGAATGAAGTT
ATGGACAAGCGCGGCTGAAAACAATAGTGATAAGCATATGCTAAGCTTAG
GCCCCGCATATTTAAGGTGTTCATTACTGATTTCGTCAGACCCTACCGCT
TTTCCATTGGGTAAGTTTCTAATTATATCATATACTTCCACAGCAGAGAT
TTGCATCCCCGAATCAAATTCAAAAGGACAACCTGTCGACAAATCAGACA
TAACAGTAGGTNAACCTGTCGACAAATCAGACATAACAGCAGGTCTATGT
ACCTCACTATTAACAGAGTTCAGCAGTTTATCAAAATGACTCCTCCACAT
GTCTGCGATCTGCTCAGCCCCAGAGCAACCATCTATAGTGTTAGGTAATA
CAGAATGAGAGGATTTAGTACTACGGAC Coding sequence (CDS) from alignment at Sc0000066:1304392..1308919- >transcript:BL97193_cuf0 ID=transcript:BL97193_cuf0|Name=transcript:BL97193_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1629bp|location=Sequence derived from alignment at Sc0000066:1304392..1308919- (Branchiostoma lanceolatum)
GCTGCCGACGTGCACATCCCTCCCGGCTACCCCCAGCGGTCCGCTACCAG
AGGCAGCATCCTGCTCGCCTTCTTCGTCATCCGGCCTGACTCCGATGACT
TCGTGCCTTTCCCAGTCGACACCATCAAGATGGTTCTACAACTCAGTCAG
CCACAGCTGCAGCTGCAGCAGGCTCTGGGCTCAAAACCCATCACCTCCAT
GGTGCCTTATCCGCAGTACCTAAATGGCGCCACTGTTCCAGGAGCTACAA
GCGCTACTCCTGATGAAGACAATCCGCCAGGAAACCCACACGGAGACTCC
GAGATCCCTCTGGTTGCAGTCAGTACAGTTGCAGCTGCGTTGGCCATAAT
TGCTTTGACCATCATAGTCTTCGTCTGTGTGAGGAAGAGGCAGCGAGTTC
CCATCGCCGATGTGTACCGTGAGCAAGCACCGCCCCCTTACAGCGACACC
CCGGTACTGCAGTATGACTATGACGACTCCTTCAAGCGTTTTCAAGCAAC
GGGATTAGATAATCCGATCATCATCAAGGACAGCAAAGTCTGAGCTGCCG
ACGTGCACATCCCTCCCGGCTACCCCCAGCGGTCCGCTACCAGAGGCAGC
ATCCTGCTCGCCTTCTTCGTCATCCGGCCTGACTCCGATGACTTCGTGCC
TTTCCCAGTCGACACCATCAAGATGGTTCTACAACTCAGTCAGCCACAGC
TGCAGCTGCAGCAGGCTCTGGGCTCAAAACCCATCACCTCCATGGTGCCT
TATCCGCAGTACCTAAATGGCGCCACTGTTCCAGGAGCTACAAGCGCTAC
TCCTGATGAAGACAATCCGCCAGGAAACCCACACGGAGACTCCGAGATCC
CTCTGGTTGCAGTCAGTACAGTTGCAGCTGCGTTGGCCATAATTGCTTTG
ACCATCATAGTCTTCGTCTGTGTGAGGAAGAGGCAGCGAGTTCCCATCGC
CGATGTGTACCGTGAGCAAGCACCGCCCCCTTACAGCGACACCCCGGTAC
TGCAGTATGACTATGACGACTCCTTCAAGCGTTTTCAAGCAACGGGATTA
GATAATCCGATCATCATCAAGGACAGCAAAGTCTGAGCTGCCGACGTGCA
CATCCCTCCCGGCTACCCCCAGCGGTCCGCTACCAGAGGCAGCATCCTGC
TCGCCTTCTTCGTCATCCGGCCTGACTCCGATGACTTCGTGCCTTTCCCA
GTCGACACCATCAAGATGGTTCTACAACTCAGTCAGCCACAGCTGCAGCT
GCAGCAGGCTCTGGGCTCAAAACCCATCACCTCCATGGTGCCTTATCCGC
AGTACCTAAATGGCGCCACTGTTCCAGGAGCTACAAGCGCTACTCCTGAT
GAAGACAATCCGCCAGGAAACCCACACGGAGACTCCGAGATCCCTCTGGT
TGCAGTCAGTACAGTTGCAGCTGCGTTGGCCATAATTGCTTTGACCATCA
TAGTCTTCGTCTGTGTGAGGAAGAGGCAGCGAGTTCCCATCGCCGATGTG
TACCGTGAGCAAGCACCGCCCCCTTACAGCGACACCCCGGTACTGCAGTA
TGACTATGACGACTCCTTCAAGCGTTTTCAAGCAACGGGATTAGATAATC
CGATCATCATCAAGGACAGCAAAGTCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000066 | genome | Sc0000066:1304392..1308919 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97193_cuf0 |
| Biotype | protein_coding |
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