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transcript:BL97187_cuf10 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97187_cuf10
Unique Nametranscript:BL97187_cuf10
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97187_cuf10

>transcript:BL97187_cuf10-protein ID=transcript:BL97187_cuf10-protein|Name=transcript:BL97187_cuf10|organism=Branchiostoma lanceolatum|type=polypeptide|length=112bp
DTFYSATEPVVQFYQDKGKLCRINAERSVDAIFADVVSGLGAPPVSAAKA
LKGKKIIFIVGGPGCGKGTQCDKIVEKYGYTHLSTGDLLRDEVKSGSARG
KKLTEIMEQGKL
Run BLAST on NCBI

mRNA from alignment at Sc0000032:256799..259099-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97187_cuf10 ID=transcript:BL97187_cuf10|Name=transcript:BL97187_cuf10|organism=Branchiostoma lanceolatum|type=mRNA|length=2301bp|location=Sequence derived from alignment at Sc0000032:256799..259099- (Branchiostoma lanceolatum)
TCGACACCTTCTACTCCGCTACCGAGCCCGTTGTGCAGTTTTACCAGGAC AAGGGCAAACTGTGCAGGGTACGTACCACTATACTCGGTCTGTTGATAAC ACGCCTGCGTAGTCTGAGTTATTTGCTTTCCGATAACATTTCTTGAATGT CCTTTTCACTTTGCCTGTTGACTTTACCTGGAATTCAAAAATGATTTTCC CGAAAGACTGGAACTAGGAGAGTTTGAGGTGACGCAATAGATCCCAACTG AACGTGGAGTGACTTATTTTCTAATTTGTAGTACAAATATCTCTTGTGTT AGATTGTGTAGTAGTAATAGCCTGCATTGTACTCTACTCCTTTTTGGGGG TTGTGATTGATGATTCATTTAACATTGTTAGTATAACACTTGAATGACTG TATATAAAAAGAACATCTTGTGACTGATATGTCTTTTAATACTAGTGCAT CTTTCTGCAGATGATCTTAACCAAAGATTCATATGTTTGTCGTATTTGCG TTGTACGCTTCGAATGTGCGTTGTACACTTCCAGACATTTCTCCTTTCCT TCTTCCTTTCCTGTCTTTTCCATCTCTGACCAAATACAAGATTTCATACT GTACAGTGTTGAGTATGCTTCTTGCCTCCATCACTTCTAACTAACTCGCA TCTTGTCTCATTATTGTCATTACTTTTCTCAACTACATACCCATACCCAA ATTAGCCTGGAGTCCAGCCTTATTATAAGCTTTAGTCCGCTACCCAAGCT CCGCTCCTCGAGGGTAGCGGACTAAAGCTAATAAGGCTGGATTCCAGGCT ATACCCAAATGTGCATATGTATGTTTTTGCCCTATTATCGTACCTCAGCC CTTCTATCACATTCTTACTTTGCCTCGTGCAAGTTTACACTTTTACACTA TCCTTCTCCAACCCATGAACACACTCTACATTTACCCCTCTCTCTCTCTC ATTATCATGACCACATGTCCCTGTTCGATACGCGCGCGCAGTCAGCATTT GCCGTGTTCGAACGGCTTTCAGCACCAAGGACAGCACCATCGTCATTTAT TTTCAAACGCGGATGAAGTTTCACGTTCAGCAAACCTAACTGTATCTTAC CGTAAGTTGATATATTCGTGATCACAGGATGGTACCAACTCGTGTGTCAT TGCGTGAAGTTGATAGTCAGGAAAGAAGAGGCAACATTCTCTGTCTTTTC GTTCAGCAAGCTGACCTGCCGACGATGGTCTCGATACGCCCACAAAATAT GAAAATGTTTAATAGCCTCTACATTGCGGTCGACACTGCCAAGTGTTTCA TCCTCGATATACATCTATCAAGACGCTGCAGAGGCTCAGAGATACCCAGA CATTTTGAGCTCTGCCTTCACCAACATATTGCCGCGAGGGGACTTTCTTT TCCCCAACTCCCAACGTTTAGAGATGTGCTTAGATTTTCGTACACCCTGT AAATCAGAACTTTGCGCTGTAACAATAGCAACACTTTCAAATTGTTTTCT TTACTCCTACAGTTTTTTCTCTCAATTTTTTTCTATTTCAATTCAGCCGC GTCGCATATGCAAGGCTTTTGTTGGCAGTTCTATCTGGCGCTTTCGTCGT GTGCATATCTATGCATGCTGTGCGATTGGCAAACACACATATACCGTTTG GTTTCTGAATTCTGATTGTTTCGTTTTATTCTCCCTCCACCAAATCAGAT CAACGCAGAGCGCTCAGTTGACGCCATCTTTGCTGACGTGGTCTCAGGAC TAGGGGCTCCTCCTGTATCTGCAGGTAAGCAATGAACTCTTCCATTAAGT CACGTCACCCAAGTAGAGGAAGAATATTCTTGAGAAACCATTTGTCAAAT TTCAATATCATTTCCATCAACGTGTAGCAATAGTTGTAACCTGACTCTAA CTTGTAGCCATTCGTGATTACCTTTGACCCATTACCGAAGTCACGTGTGC AGAGGTCATGTGTCAGAAGTAGGTTGGCATCACAACTGAGGAAGATCGAA AAGTTGTTCTGGTCAGTCAATCTTTCTTTAATGATATCATTTGCCAGCAC AGATCAGCTTTGGGACAAGTCTGAATATTTTTCGCTTTATCTTTGTTGCC TTACAGCAAAGGCTCTGAAGGGCAAGAAGATCATCTTCATCGTGGGGGGT CCCGGCTGCGGCAAGGGCACCCAGTGTGACAAGATCGTGGAGAAGTACGG CTACACTCACCTGTCCACAGGTGATCTGCTGAGGGACGAGGTCAAGTCGG GGTCAGCCCGGGGCAAGAAGCTGACCGAGATCATGGAGCAGGGCAAGCTG G

Coding sequence (CDS) from alignment at Sc0000032:256799..259099-

>transcript:BL97187_cuf10 ID=transcript:BL97187_cuf10|Name=transcript:BL97187_cuf10|organism=Branchiostoma lanceolatum|type=CDS|length=1008bp|location=Sequence derived from alignment at Sc0000032:256799..259099- (Branchiostoma lanceolatum)
GACACCTTCTACTCCGCTACCGAGCCCGTTGTGCAGTTTTACCAGGACAA
GGGCAAACTGTGCAGGATCAACGCAGAGCGCTCAGTTGACGCCATCTTTG
CTGACGTGGTCTCAGGACTAGGGGCTCCTCCTGTATCTGCAGCAAAGGCT
CTGAAGGGCAAGAAGATCATCTTCATCGTGGGGGGTCCCGGCTGCGGCAA
GGGCACCCAGTGTGACAAGATCGTGGAGAAGTACGGCTACACTCACCTGT
CCACAGGTGATCTGCTGAGGGACGAGGTCAAGTCGGGGTCAGCCCGGGGC
AAGAAGCTGACCGAGATCATGGAGCAGGGCAAGCTGGACACCTTCTACTC
CGCTACCGAGCCCGTTGTGCAGTTTTACCAGGACAAGGGCAAACTGTGCA
GGATCAACGCAGAGCGCTCAGTTGACGCCATCTTTGCTGACGTGGTCTCA
GGACTAGGGGCTCCTCCTGTATCTGCAGCAAAGGCTCTGAAGGGCAAGAA
GATCATCTTCATCGTGGGGGGTCCCGGCTGCGGCAAGGGCACCCAGTGTG
ACAAGATCGTGGAGAAGTACGGCTACACTCACCTGTCCACAGGTGATCTG
CTGAGGGACGAGGTCAAGTCGGGGTCAGCCCGGGGCAAGAAGCTGACCGA
GATCATGGAGCAGGGCAAGCTGGACACCTTCTACTCCGCTACCGAGCCCG
TTGTGCAGTTTTACCAGGACAAGGGCAAACTGTGCAGGATCAACGCAGAG
CGCTCAGTTGACGCCATCTTTGCTGACGTGGTCTCAGGACTAGGGGCTCC
TCCTGTATCTGCAGCAAAGGCTCTGAAGGGCAAGAAGATCATCTTCATCG
TGGGGGGTCCCGGCTGCGGCAAGGGCACCCAGTGTGACAAGATCGTGGAG
AAGTACGGCTACACTCACCTGTCCACAGGTGATCTGCTGAGGGACGAGGT
CAAGTCGGGGTCAGCCCGGGGCAAGAAGCTGACCGAGATCATGGAGCAGG
GCAAGCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97187gene:BL97187Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97187_cuf10transcript:BL97187_cuf10-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97187_cuf10-E1BL97187_cuf10-E1-1564476830-180729Branchiostoma lanceolatumexon
BL97187_cuf10-E2BL97187_cuf10-E2-1564476830-180726Branchiostoma lanceolatumexon
BL97187_cuf10-E3BL97187_cuf10-E3-1564476830-180724Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000032genomeSc0000032:256799..259099 -
Properties
Property NameValue
Transcript idBL97187_cuf10
Biotypeprotein_coding