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transcript:BL97185_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97185_cuf2
Unique Nametranscript:BL97185_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97185_cuf2

>transcript:BL97185_cuf2-protein ID=transcript:BL97185_cuf2-protein|Name=transcript:BL97185_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=449bp
RIDEIKARQNFKTTTNNRRHGYMFKTLIVVVQPFTEGRSAMAMNRRRSSA
QRLMKSMENRDVRLAVLVVLLLPVMTVMALYLVLSREQAVLQTTVHGGLT
ERVFPLALTISEEEEEGLCILNTDAVFIHTPACGSDVVQSVLFRFGFQKD
LFVTLPVRPGNPSIGSGEILPEDFLHPSVNFSRPNQLNILAHRARYNKDV
MCKMFPETSQYVTILRQPLRRFETDFFNSKMYRYFSEGSQSGAESLQDYL
DDPKYWETRKTTTYCTRNCMSAVLGFPLDDTMNMRDTRATIDVIKQLDSD
FALVLIYEYLDQSLVLLKRHMCWKVQDIIYDTKFLFFSKVRNFDYRLRPE
DLAENFRRLNMVDYLLYEHFNRTLWAKIAEEGPEFDEEVDCYRNVLRKVS
QYCRTDTNKTAIFRKHKWHEKFKVNRDMCKMVLRRTEEWDGFLRRRYYV
Run BLAST on NCBI

mRNA from alignment at Sc0000032:105847..109714+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97185_cuf2 ID=transcript:BL97185_cuf2|Name=transcript:BL97185_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3868bp|location=Sequence derived from alignment at Sc0000032:105847..109714+ (Branchiostoma lanceolatum)
GACGAATCGACGAAATAAAGGCGAGGCAAAATTTCAAGACTACCACAAAC AACAGACGCCATGGGTATATGTTTAAGACGTTGATTGTAGTTGTACAACC TTTTACTGAAGGACGATCAGCGATGGCGATGAACAGAAGACGCAGCAGTG CACAGCGGTTAATGAAGAGGTAGGGAACAGGTTTCACTCGGTCTTTGTAA TGACAGACTTATTTCTGTTGTGTCAACATTACGTAGCGACAGACAGTGTT TGTCTTCATAGTCGGGTGATTTTAGTAAAGAATGACACATAGTAGGAAGT GGTTAAGCTTTACGAAGTGTAATTCATGTGCGTGCACGAAAAATACTACG TTTTTATTATCCTCAAATAGCTTTTTTTGTTTGAGGTAGCGAGCTCTGAA AGTCTGTTATGATCGTCTACAACTTAATACGTTTGTTTTTGTTTTGTCTG GAAAATATTTCTATGCCTGTGCACATTAAGGGTGATACCTTCTCACCTCG GGAACCTGTCTACAACGACCACATATCCATGGCGACCGTATTTGGTCAGT TCCTCGAGTGGTCGCCTTAGACAGGTTCGGCCAGGCCTCCAACCTGGCAG GTAACGACCACATGTCCATGGCGACCGTATTTGGTCAGTTCCTCGAGTGG TCGACTTAGACAGGTTCGGCTGTATTTACAATGAAAAGAGTGCCACATTA GCTGATTGGATAAGAATCATTTCTGCTTCAAAACGTAAGGCACGTTTTCA GCGAAGGTAAAAATGCCGCCAACAGACCCAAAATCAAACAACAGCCAGAC AAAAACATGTAATTACAGAGAGTGTTTGGGAGGGGTGAATGTAAAGTTCG GGATGGCAGGACTGACTAGTCAGGCTATTATTAGAGTGTCACATTAGCTG ATTGGATAAACAATTTCCGCATCAAAACTTGAGCCATGTTTTCAGCGAAG GTAAAAATGCCTCCAACAGACCCAAAAGCAACAACAGCCAGACAAAAACA TGTAATGACAGTGTTTGGGAGGGGTGAATGTAGAGTTTGGGACGGCAAGA CTGACTAGTCAGGCTATTATTGTGTCACATTAGCTGATTGGATAAACTAT TTCCGCATCAAAACTTGAGCCATGTTTTCAGCGAAGGTAAAAATGCCGCC AACAGACCCAAAATCAACAACAGCCAGACAAAAACATGTAATTACAGTGT TTGGGAGGGGTGAATGTAAAGTTCGGGATGGCAGGACTGACTAGTCAGGC TATTATTAGAGTGTTACATTAGCTGATTGGATAAACTGTTTCCGCATCAA AACTTGGGGCCACTGCAGGTCGTTGAAAATACAGTGGAGGCGTATATGTA AAGGTCATGATGGCATGACTGACTAGTCAGCCTATCATTAGTAATTATCT TGTTAACAACAAGGCATGATTTTACACTTGGTAAACACTTGTTAGACGGG GCGATATGATTTGGATACGACATCAAAAGGTTAGATAGAAGGTTAACTGA ATTAAGCATTTGAGTTGTGTATCATGTTGCGTTTAATCCGACAGATTTTT CAAACATGGCCTTCATTGTACCCATCTCTATTGAAGTGACATCATTGTAT TCTGTGCGTCATCGAACGTTAGCTTAGCTCACTTTTTGCATTTGGCATGT TTTTAAGATTGCGGTTCCAAGATTAAATCTTTCTCAACGAAGAATACCTG AATCTTCGTCACCTTCTCTACCCATTACGTCATCTACAGACGTCAGCCAT CAGCTGGCACTGTGTGTTGACGTCACATCTTGATTACGTCTTTTAACAAT CGTCATTTGACATTTGAACGAACACCTGAAGAAAACCTGAATTTCCCTTC AACAAGTTTTCAAATCTGACTGACGTCACATTATGCATTAATACATAAGT CTGACTCCCGCAATGTTTGAGTGCGCATGTGCAATGTGATGCATTATACG TTATATGCCCCTAGGCCATACATTAAAAATGGTCAGCTACAGGGGCCGTC AACTTTGAATTATTTCCTACAATGTGTCACAGTGCACATGCGCACTACAA ACAATAATGGTGGCCGTGACGTCACTTACGGACACGGTATCGCTTTGAAT TAGACATGAATTGGAATTCGTCAAACCTGTTAAAACTGACCAAACTACGC AAACCTGTAATGATTTAATCGATGTTTCCCTCCCCAGTATGGAGAACAGA GACGTGCGTCTGGCGGTGCTCGTGGTCCTCCTGCTGCCCGTGATGACTGT CATGGCGCTGTACCTGGTCCTCTCGCGAGAACAGGCGGTACTACAGACCA CGGTGCACGGCGGCCTCACCGAACGCGTCTTCCCGCTGGCACTCACGTAA GCACAACAAGTCCTCTCTCCAAGCAGAGGTTAGGCTAGGGCTGGTTTCGG GCGTCTTTTGTAGGCGTTTTGTCGATCTTTCCGTTTTTCTTTTTATCATA ATACATTTTGTACTGCATAAGTTATCTCTCCTTGAATGGCACAACTCGGG CACTCGGCATATGTAAGAAGCATAGTCTAAACAAGAACTGTTCAGAAGTT AGGAGTCCATCTTGACATATTACTCAAAATGCGCTGCGCATGCGCAGTTG GAACAATGAATACAACTTATAGAGGTTATAACGTTTTTCGATAACCAAGA TAAAGCCACTTCGCATCGGCTTGACTGAATTGTGAGACCATAGACTTTCG TTAAAAGCTTTTCTTATCCATCCTCCTATTCCTTCCTAAAAAGAATATAA TATTACTGGTTAAGATTGGAACATTGTCATCAAATAAATCCGTTATTGAT CATTTCTTTCTCTCTTATAGGATTTCAGAAGAGGAAGAAGAAGGGTTATG CATCCTGAATACGGACGCGGTGTTCATCCACACCCCCGCCTGCGGGTCTG ACGTGGTACAGTCCGTCCTTTTCCGGTTCGGCTTCCAGAAGGACCTGTTC GTCACCCTGCCGGTCAGACCGGGCAACCCGTCCATCGGGTCCGGAGAGAT CCTACCGGAGGACTTCCTTCATCCTTCCGTTAATTTCTCCCGCCCGAACC AGCTCAACATCCTCGCTCACCGCGCACGGTACAACAAGGACGTCATGTGC AAGATGTTCCCGGAGACATCCCAGTACGTCACCATCTTAAGACAACCTCT TCGCAGATTCGAAACAGACTTCTTTAATTCTAAGATGTACAGATACTTCA GTGAAGGGTCGCAATCAGGTGCAGAATCCTTACAGGACTACCTAGATGAT CCAAAGTACTGGGAGACCCGCAAAACCACGACATATTGTACCCGAAACTG TATGTCTGCCGTTCTAGGCTTCCCATTGGACGATACCATGAACATGCGGG ACACCCGAGCAACGATAGACGTCATCAAACAACTAGATTCAGACTTCGCT TTGGTCCTCATCTACGAGTACTTAGACCAGTCCTTGGTGCTGCTGAAGAG ACACATGTGCTGGAAGGTTCAGGACATCATATATGATACAAAGTTTCTAT TCTTCAGCAAAGTCCGTAACTTCGACTATCGCCTGAGACCAGAAGATCTC GCCGAAAACTTCAGGCGGTTGAACATGGTCGATTACTTGCTATACGAACA TTTTAACAGAACGCTTTGGGCGAAGATTGCCGAAGAAGGCCCGGAGTTTG ACGAGGAGGTCGACTGTTACAGGAACGTCTTGAGAAAAGTGTCTCAGTAT TGCCGCACCGACACGAACAAGACGGCCATCTTCCGCAAGCACAAGTGGCA CGAGAAGTTCAAGGTCAACAGGGACATGTGTAAGATGGTGCTCAGAAGGA CAGAGGAGTGGGACGGCTTTCTCAGAAGACGATACTATGTCTAAGTTAAG GCATATCTATATCTACAT

Coding sequence (CDS) from alignment at Sc0000032:105847..109714+

>transcript:BL97185_cuf2 ID=transcript:BL97185_cuf2|Name=transcript:BL97185_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=4050bp|location=Sequence derived from alignment at Sc0000032:105847..109714+ (Branchiostoma lanceolatum)
CGAATCGACGAAATAAAGGCGAGGCAAAATTTCAAGACTACCACAAACAA
CAGACGCCATGGGTATATGTTTAAGACGTTGATTGTAGTTGTACAACCTT
TTACTGAAGGACGATCAGCGATGGCGATGAACAGAAGACGCAGCAGTGCA
CAGCGGTTAATGAAGAGTATGGAGAACAGAGACGTGCGTCTGGCGGTGCT
CGTGGTCCTCCTGCTGCCCGTGATGACTGTCATGGCGCTGTACCTGGTCC
TCTCGCGAGAACAGGCGGTACTACAGACCACGGTGCACGGCGGCCTCACC
GAACGCGTCTTCCCGCTGGCACTCACGATTTCAGAAGAGGAAGAAGAAGG
GTTATGCATCCTGAATACGGACGCGGTGTTCATCCACACCCCCGCCTGCG
GGTCTGACGTGGTACAGTCCGTCCTTTTCCGGTTCGGCTTCCAGAAGGAC
CTGTTCGTCACCCTGCCGGTCAGACCGGGCAACCCGTCCATCGGGTCCGG
AGAGATCCTACCGGAGGACTTCCTTCATCCTTCCGTTAATTTCTCCCGCC
CGAACCAGCTCAACATCCTCGCTCACCGCGCACGGTACAACAAGGACGTC
ATGTGCAAGATGTTCCCGGAGACATCCCAGTACGTCACCATCTTAAGACA
ACCTCTTCGCAGATTCGAAACAGACTTCTTTAATTCTAAGATGTACAGAT
ACTTCAGTGAAGGGTCGCAATCAGGTGCAGAATCCTTACAGGACTACCTA
GATGATCCAAAGTACTGGGAGACCCGCAAAACCACGACATATTGTACCCG
AAACTGTATGTCTGCCGTTCTAGGCTTCCCATTGGACGATACCATGAACA
TGCGGGACACCCGAGCAACGATAGACGTCATCAAACAACTAGATTCAGAC
TTCGCTTTGGTCCTCATCTACGAGTACTTAGACCAGTCCTTGGTGCTGCT
GAAGAGACACATGTGCTGGAAGGTTCAGGACATCATATATGATACAAAGT
TTCTATTCTTCAGCAAAGTCCGTAACTTCGACTATCGCCTGAGACCAGAA
GATCTCGCCGAAAACTTCAGGCGGTTGAACATGGTCGATTACTTGCTATA
CGAACATTTTAACAGAACGCTTTGGGCGAAGATTGCCGAAGAAGGCCCGG
AGTTTGACGAGGAGGTCGACTGTTACAGGAACGTCTTGAGAAAAGTGTCT
CAGTATTGCCGCACCGACACGAACAAGACGGCCATCTTCCGCAAGCACAA
GTGGCACGAGAAGTTCAAGGTCAACAGGGACATGTGTAAGATGGTGCTCA
GAAGGACAGAGGAGTGGGACGGCTTTCTCAGAAGACGATACTATGTCTAA
CGAATCGACGAAATAAAGGCGAGGCAAAATTTCAAGACTACCACAAACAA
CAGACGCCATGGGTATATGTTTAAGACGTTGATTGTAGTTGTACAACCTT
TTACTGAAGGACGATCAGCGATGGCGATGAACAGAAGACGCAGCAGTGCA
CAGCGGTTAATGAAGAGTATGGAGAACAGAGACGTGCGTCTGGCGGTGCT
CGTGGTCCTCCTGCTGCCCGTGATGACTGTCATGGCGCTGTACCTGGTCC
TCTCGCGAGAACAGGCGGTACTACAGACCACGGTGCACGGCGGCCTCACC
GAACGCGTCTTCCCGCTGGCACTCACGATTTCAGAAGAGGAAGAAGAAGG
GTTATGCATCCTGAATACGGACGCGGTGTTCATCCACACCCCCGCCTGCG
GGTCTGACGTGGTACAGTCCGTCCTTTTCCGGTTCGGCTTCCAGAAGGAC
CTGTTCGTCACCCTGCCGGTCAGACCGGGCAACCCGTCCATCGGGTCCGG
AGAGATCCTACCGGAGGACTTCCTTCATCCTTCCGTTAATTTCTCCCGCC
CGAACCAGCTCAACATCCTCGCTCACCGCGCACGGTACAACAAGGACGTC
ATGTGCAAGATGTTCCCGGAGACATCCCAGTACGTCACCATCTTAAGACA
ACCTCTTCGCAGATTCGAAACAGACTTCTTTAATTCTAAGATGTACAGAT
ACTTCAGTGAAGGGTCGCAATCAGGTGCAGAATCCTTACAGGACTACCTA
GATGATCCAAAGTACTGGGAGACCCGCAAAACCACGACATATTGTACCCG
AAACTGTATGTCTGCCGTTCTAGGCTTCCCATTGGACGATACCATGAACA
TGCGGGACACCCGAGCAACGATAGACGTCATCAAACAACTAGATTCAGAC
TTCGCTTTGGTCCTCATCTACGAGTACTTAGACCAGTCCTTGGTGCTGCT
GAAGAGACACATGTGCTGGAAGGTTCAGGACATCATATATGATACAAAGT
TTCTATTCTTCAGCAAAGTCCGTAACTTCGACTATCGCCTGAGACCAGAA
GATCTCGCCGAAAACTTCAGGCGGTTGAACATGGTCGATTACTTGCTATA
CGAACATTTTAACAGAACGCTTTGGGCGAAGATTGCCGAAGAAGGCCCGG
AGTTTGACGAGGAGGTCGACTGTTACAGGAACGTCTTGAGAAAAGTGTCT
CAGTATTGCCGCACCGACACGAACAAGACGGCCATCTTCCGCAAGCACAA
GTGGCACGAGAAGTTCAAGGTCAACAGGGACATGTGTAAGATGGTGCTCA
GAAGGACAGAGGAGTGGGACGGCTTTCTCAGAAGACGATACTATGTCTAA
CGAATCGACGAAATAAAGGCGAGGCAAAATTTCAAGACTACCACAAACAA
CAGACGCCATGGGTATATGTTTAAGACGTTGATTGTAGTTGTACAACCTT
TTACTGAAGGACGATCAGCGATGGCGATGAACAGAAGACGCAGCAGTGCA
CAGCGGTTAATGAAGAGTATGGAGAACAGAGACGTGCGTCTGGCGGTGCT
CGTGGTCCTCCTGCTGCCCGTGATGACTGTCATGGCGCTGTACCTGGTCC
TCTCGCGAGAACAGGCGGTACTACAGACCACGGTGCACGGCGGCCTCACC
GAACGCGTCTTCCCGCTGGCACTCACGATTTCAGAAGAGGAAGAAGAAGG
GTTATGCATCCTGAATACGGACGCGGTGTTCATCCACACCCCCGCCTGCG
GGTCTGACGTGGTACAGTCCGTCCTTTTCCGGTTCGGCTTCCAGAAGGAC
CTGTTCGTCACCCTGCCGGTCAGACCGGGCAACCCGTCCATCGGGTCCGG
AGAGATCCTACCGGAGGACTTCCTTCATCCTTCCGTTAATTTCTCCCGCC
CGAACCAGCTCAACATCCTCGCTCACCGCGCACGGTACAACAAGGACGTC
ATGTGCAAGATGTTCCCGGAGACATCCCAGTACGTCACCATCTTAAGACA
ACCTCTTCGCAGATTCGAAACAGACTTCTTTAATTCTAAGATGTACAGAT
ACTTCAGTGAAGGGTCGCAATCAGGTGCAGAATCCTTACAGGACTACCTA
GATGATCCAAAGTACTGGGAGACCCGCAAAACCACGACATATTGTACCCG
AAACTGTATGTCTGCCGTTCTAGGCTTCCCATTGGACGATACCATGAACA
TGCGGGACACCCGAGCAACGATAGACGTCATCAAACAACTAGATTCAGAC
TTCGCTTTGGTCCTCATCTACGAGTACTTAGACCAGTCCTTGGTGCTGCT
GAAGAGACACATGTGCTGGAAGGTTCAGGACATCATATATGATACAAAGT
TTCTATTCTTCAGCAAAGTCCGTAACTTCGACTATCGCCTGAGACCAGAA
GATCTCGCCGAAAACTTCAGGCGGTTGAACATGGTCGATTACTTGCTATA
CGAACATTTTAACAGAACGCTTTGGGCGAAGATTGCCGAAGAAGGCCCGG
AGTTTGACGAGGAGGTCGACTGTTACAGGAACGTCTTGAGAAAAGTGTCT
CAGTATTGCCGCACCGACACGAACAAGACGGCCATCTTCCGCAAGCACAA
GTGGCACGAGAAGTTCAAGGTCAACAGGGACATGTGTAAGATGGTGCTCA
GAAGGACAGAGGAGTGGGACGGCTTTCTCAGAAGACGATACTATGTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97185gene:BL97185Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97185_cuf2transcript:BL97185_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97185_cuf2-E1BL97185_cuf2-E1-1564476830-180533Branchiostoma lanceolatumexon
BL97185_cuf2-E2BL97185_cuf2-E2-1564476830-180535Branchiostoma lanceolatumexon
BL97185_cuf2-E3BL97185_cuf2-E3-1564476830-180538Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000032genomeSc0000032:105847..109714 +
Properties
Property NameValue
Transcript idBL97185_cuf2
Biotypeprotein_coding