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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97185_cuf2 >transcript:BL97185_cuf2-protein ID=transcript:BL97185_cuf2-protein|Name=transcript:BL97185_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=449bp
RIDEIKARQNFKTTTNNRRHGYMFKTLIVVVQPFTEGRSAMAMNRRRSSA
QRLMKSMENRDVRLAVLVVLLLPVMTVMALYLVLSREQAVLQTTVHGGLT
ERVFPLALTISEEEEEGLCILNTDAVFIHTPACGSDVVQSVLFRFGFQKD
LFVTLPVRPGNPSIGSGEILPEDFLHPSVNFSRPNQLNILAHRARYNKDV
MCKMFPETSQYVTILRQPLRRFETDFFNSKMYRYFSEGSQSGAESLQDYL
DDPKYWETRKTTTYCTRNCMSAVLGFPLDDTMNMRDTRATIDVIKQLDSD
FALVLIYEYLDQSLVLLKRHMCWKVQDIIYDTKFLFFSKVRNFDYRLRPE
DLAENFRRLNMVDYLLYEHFNRTLWAKIAEEGPEFDEEVDCYRNVLRKVS
QYCRTDTNKTAIFRKHKWHEKFKVNRDMCKMVLRRTEEWDGFLRRRYYV Run BLAST on NCBI mRNA from alignment at Sc0000032:105847..109714+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97185_cuf2 ID=transcript:BL97185_cuf2|Name=transcript:BL97185_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3868bp|location=Sequence derived from alignment at Sc0000032:105847..109714+ (Branchiostoma lanceolatum)
GACGAATCGACGAAATAAAGGCGAGGCAAAATTTCAAGACTACCACAAAC
AACAGACGCCATGGGTATATGTTTAAGACGTTGATTGTAGTTGTACAACC
TTTTACTGAAGGACGATCAGCGATGGCGATGAACAGAAGACGCAGCAGTG
CACAGCGGTTAATGAAGAGGTAGGGAACAGGTTTCACTCGGTCTTTGTAA
TGACAGACTTATTTCTGTTGTGTCAACATTACGTAGCGACAGACAGTGTT
TGTCTTCATAGTCGGGTGATTTTAGTAAAGAATGACACATAGTAGGAAGT
GGTTAAGCTTTACGAAGTGTAATTCATGTGCGTGCACGAAAAATACTACG
TTTTTATTATCCTCAAATAGCTTTTTTTGTTTGAGGTAGCGAGCTCTGAA
AGTCTGTTATGATCGTCTACAACTTAATACGTTTGTTTTTGTTTTGTCTG
GAAAATATTTCTATGCCTGTGCACATTAAGGGTGATACCTTCTCACCTCG
GGAACCTGTCTACAACGACCACATATCCATGGCGACCGTATTTGGTCAGT
TCCTCGAGTGGTCGCCTTAGACAGGTTCGGCCAGGCCTCCAACCTGGCAG
GTAACGACCACATGTCCATGGCGACCGTATTTGGTCAGTTCCTCGAGTGG
TCGACTTAGACAGGTTCGGCTGTATTTACAATGAAAAGAGTGCCACATTA
GCTGATTGGATAAGAATCATTTCTGCTTCAAAACGTAAGGCACGTTTTCA
GCGAAGGTAAAAATGCCGCCAACAGACCCAAAATCAAACAACAGCCAGAC
AAAAACATGTAATTACAGAGAGTGTTTGGGAGGGGTGAATGTAAAGTTCG
GGATGGCAGGACTGACTAGTCAGGCTATTATTAGAGTGTCACATTAGCTG
ATTGGATAAACAATTTCCGCATCAAAACTTGAGCCATGTTTTCAGCGAAG
GTAAAAATGCCTCCAACAGACCCAAAAGCAACAACAGCCAGACAAAAACA
TGTAATGACAGTGTTTGGGAGGGGTGAATGTAGAGTTTGGGACGGCAAGA
CTGACTAGTCAGGCTATTATTGTGTCACATTAGCTGATTGGATAAACTAT
TTCCGCATCAAAACTTGAGCCATGTTTTCAGCGAAGGTAAAAATGCCGCC
AACAGACCCAAAATCAACAACAGCCAGACAAAAACATGTAATTACAGTGT
TTGGGAGGGGTGAATGTAAAGTTCGGGATGGCAGGACTGACTAGTCAGGC
TATTATTAGAGTGTTACATTAGCTGATTGGATAAACTGTTTCCGCATCAA
AACTTGGGGCCACTGCAGGTCGTTGAAAATACAGTGGAGGCGTATATGTA
AAGGTCATGATGGCATGACTGACTAGTCAGCCTATCATTAGTAATTATCT
TGTTAACAACAAGGCATGATTTTACACTTGGTAAACACTTGTTAGACGGG
GCGATATGATTTGGATACGACATCAAAAGGTTAGATAGAAGGTTAACTGA
ATTAAGCATTTGAGTTGTGTATCATGTTGCGTTTAATCCGACAGATTTTT
CAAACATGGCCTTCATTGTACCCATCTCTATTGAAGTGACATCATTGTAT
TCTGTGCGTCATCGAACGTTAGCTTAGCTCACTTTTTGCATTTGGCATGT
TTTTAAGATTGCGGTTCCAAGATTAAATCTTTCTCAACGAAGAATACCTG
AATCTTCGTCACCTTCTCTACCCATTACGTCATCTACAGACGTCAGCCAT
CAGCTGGCACTGTGTGTTGACGTCACATCTTGATTACGTCTTTTAACAAT
CGTCATTTGACATTTGAACGAACACCTGAAGAAAACCTGAATTTCCCTTC
AACAAGTTTTCAAATCTGACTGACGTCACATTATGCATTAATACATAAGT
CTGACTCCCGCAATGTTTGAGTGCGCATGTGCAATGTGATGCATTATACG
TTATATGCCCCTAGGCCATACATTAAAAATGGTCAGCTACAGGGGCCGTC
AACTTTGAATTATTTCCTACAATGTGTCACAGTGCACATGCGCACTACAA
ACAATAATGGTGGCCGTGACGTCACTTACGGACACGGTATCGCTTTGAAT
TAGACATGAATTGGAATTCGTCAAACCTGTTAAAACTGACCAAACTACGC
AAACCTGTAATGATTTAATCGATGTTTCCCTCCCCAGTATGGAGAACAGA
GACGTGCGTCTGGCGGTGCTCGTGGTCCTCCTGCTGCCCGTGATGACTGT
CATGGCGCTGTACCTGGTCCTCTCGCGAGAACAGGCGGTACTACAGACCA
CGGTGCACGGCGGCCTCACCGAACGCGTCTTCCCGCTGGCACTCACGTAA
GCACAACAAGTCCTCTCTCCAAGCAGAGGTTAGGCTAGGGCTGGTTTCGG
GCGTCTTTTGTAGGCGTTTTGTCGATCTTTCCGTTTTTCTTTTTATCATA
ATACATTTTGTACTGCATAAGTTATCTCTCCTTGAATGGCACAACTCGGG
CACTCGGCATATGTAAGAAGCATAGTCTAAACAAGAACTGTTCAGAAGTT
AGGAGTCCATCTTGACATATTACTCAAAATGCGCTGCGCATGCGCAGTTG
GAACAATGAATACAACTTATAGAGGTTATAACGTTTTTCGATAACCAAGA
TAAAGCCACTTCGCATCGGCTTGACTGAATTGTGAGACCATAGACTTTCG
TTAAAAGCTTTTCTTATCCATCCTCCTATTCCTTCCTAAAAAGAATATAA
TATTACTGGTTAAGATTGGAACATTGTCATCAAATAAATCCGTTATTGAT
CATTTCTTTCTCTCTTATAGGATTTCAGAAGAGGAAGAAGAAGGGTTATG
CATCCTGAATACGGACGCGGTGTTCATCCACACCCCCGCCTGCGGGTCTG
ACGTGGTACAGTCCGTCCTTTTCCGGTTCGGCTTCCAGAAGGACCTGTTC
GTCACCCTGCCGGTCAGACCGGGCAACCCGTCCATCGGGTCCGGAGAGAT
CCTACCGGAGGACTTCCTTCATCCTTCCGTTAATTTCTCCCGCCCGAACC
AGCTCAACATCCTCGCTCACCGCGCACGGTACAACAAGGACGTCATGTGC
AAGATGTTCCCGGAGACATCCCAGTACGTCACCATCTTAAGACAACCTCT
TCGCAGATTCGAAACAGACTTCTTTAATTCTAAGATGTACAGATACTTCA
GTGAAGGGTCGCAATCAGGTGCAGAATCCTTACAGGACTACCTAGATGAT
CCAAAGTACTGGGAGACCCGCAAAACCACGACATATTGTACCCGAAACTG
TATGTCTGCCGTTCTAGGCTTCCCATTGGACGATACCATGAACATGCGGG
ACACCCGAGCAACGATAGACGTCATCAAACAACTAGATTCAGACTTCGCT
TTGGTCCTCATCTACGAGTACTTAGACCAGTCCTTGGTGCTGCTGAAGAG
ACACATGTGCTGGAAGGTTCAGGACATCATATATGATACAAAGTTTCTAT
TCTTCAGCAAAGTCCGTAACTTCGACTATCGCCTGAGACCAGAAGATCTC
GCCGAAAACTTCAGGCGGTTGAACATGGTCGATTACTTGCTATACGAACA
TTTTAACAGAACGCTTTGGGCGAAGATTGCCGAAGAAGGCCCGGAGTTTG
ACGAGGAGGTCGACTGTTACAGGAACGTCTTGAGAAAAGTGTCTCAGTAT
TGCCGCACCGACACGAACAAGACGGCCATCTTCCGCAAGCACAAGTGGCA
CGAGAAGTTCAAGGTCAACAGGGACATGTGTAAGATGGTGCTCAGAAGGA
CAGAGGAGTGGGACGGCTTTCTCAGAAGACGATACTATGTCTAAGTTAAG
GCATATCTATATCTACAT Coding sequence (CDS) from alignment at Sc0000032:105847..109714+ >transcript:BL97185_cuf2 ID=transcript:BL97185_cuf2|Name=transcript:BL97185_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=4050bp|location=Sequence derived from alignment at Sc0000032:105847..109714+ (Branchiostoma lanceolatum)
CGAATCGACGAAATAAAGGCGAGGCAAAATTTCAAGACTACCACAAACAA
CAGACGCCATGGGTATATGTTTAAGACGTTGATTGTAGTTGTACAACCTT
TTACTGAAGGACGATCAGCGATGGCGATGAACAGAAGACGCAGCAGTGCA
CAGCGGTTAATGAAGAGTATGGAGAACAGAGACGTGCGTCTGGCGGTGCT
CGTGGTCCTCCTGCTGCCCGTGATGACTGTCATGGCGCTGTACCTGGTCC
TCTCGCGAGAACAGGCGGTACTACAGACCACGGTGCACGGCGGCCTCACC
GAACGCGTCTTCCCGCTGGCACTCACGATTTCAGAAGAGGAAGAAGAAGG
GTTATGCATCCTGAATACGGACGCGGTGTTCATCCACACCCCCGCCTGCG
GGTCTGACGTGGTACAGTCCGTCCTTTTCCGGTTCGGCTTCCAGAAGGAC
CTGTTCGTCACCCTGCCGGTCAGACCGGGCAACCCGTCCATCGGGTCCGG
AGAGATCCTACCGGAGGACTTCCTTCATCCTTCCGTTAATTTCTCCCGCC
CGAACCAGCTCAACATCCTCGCTCACCGCGCACGGTACAACAAGGACGTC
ATGTGCAAGATGTTCCCGGAGACATCCCAGTACGTCACCATCTTAAGACA
ACCTCTTCGCAGATTCGAAACAGACTTCTTTAATTCTAAGATGTACAGAT
ACTTCAGTGAAGGGTCGCAATCAGGTGCAGAATCCTTACAGGACTACCTA
GATGATCCAAAGTACTGGGAGACCCGCAAAACCACGACATATTGTACCCG
AAACTGTATGTCTGCCGTTCTAGGCTTCCCATTGGACGATACCATGAACA
TGCGGGACACCCGAGCAACGATAGACGTCATCAAACAACTAGATTCAGAC
TTCGCTTTGGTCCTCATCTACGAGTACTTAGACCAGTCCTTGGTGCTGCT
GAAGAGACACATGTGCTGGAAGGTTCAGGACATCATATATGATACAAAGT
TTCTATTCTTCAGCAAAGTCCGTAACTTCGACTATCGCCTGAGACCAGAA
GATCTCGCCGAAAACTTCAGGCGGTTGAACATGGTCGATTACTTGCTATA
CGAACATTTTAACAGAACGCTTTGGGCGAAGATTGCCGAAGAAGGCCCGG
AGTTTGACGAGGAGGTCGACTGTTACAGGAACGTCTTGAGAAAAGTGTCT
CAGTATTGCCGCACCGACACGAACAAGACGGCCATCTTCCGCAAGCACAA
GTGGCACGAGAAGTTCAAGGTCAACAGGGACATGTGTAAGATGGTGCTCA
GAAGGACAGAGGAGTGGGACGGCTTTCTCAGAAGACGATACTATGTCTAA
CGAATCGACGAAATAAAGGCGAGGCAAAATTTCAAGACTACCACAAACAA
CAGACGCCATGGGTATATGTTTAAGACGTTGATTGTAGTTGTACAACCTT
TTACTGAAGGACGATCAGCGATGGCGATGAACAGAAGACGCAGCAGTGCA
CAGCGGTTAATGAAGAGTATGGAGAACAGAGACGTGCGTCTGGCGGTGCT
CGTGGTCCTCCTGCTGCCCGTGATGACTGTCATGGCGCTGTACCTGGTCC
TCTCGCGAGAACAGGCGGTACTACAGACCACGGTGCACGGCGGCCTCACC
GAACGCGTCTTCCCGCTGGCACTCACGATTTCAGAAGAGGAAGAAGAAGG
GTTATGCATCCTGAATACGGACGCGGTGTTCATCCACACCCCCGCCTGCG
GGTCTGACGTGGTACAGTCCGTCCTTTTCCGGTTCGGCTTCCAGAAGGAC
CTGTTCGTCACCCTGCCGGTCAGACCGGGCAACCCGTCCATCGGGTCCGG
AGAGATCCTACCGGAGGACTTCCTTCATCCTTCCGTTAATTTCTCCCGCC
CGAACCAGCTCAACATCCTCGCTCACCGCGCACGGTACAACAAGGACGTC
ATGTGCAAGATGTTCCCGGAGACATCCCAGTACGTCACCATCTTAAGACA
ACCTCTTCGCAGATTCGAAACAGACTTCTTTAATTCTAAGATGTACAGAT
ACTTCAGTGAAGGGTCGCAATCAGGTGCAGAATCCTTACAGGACTACCTA
GATGATCCAAAGTACTGGGAGACCCGCAAAACCACGACATATTGTACCCG
AAACTGTATGTCTGCCGTTCTAGGCTTCCCATTGGACGATACCATGAACA
TGCGGGACACCCGAGCAACGATAGACGTCATCAAACAACTAGATTCAGAC
TTCGCTTTGGTCCTCATCTACGAGTACTTAGACCAGTCCTTGGTGCTGCT
GAAGAGACACATGTGCTGGAAGGTTCAGGACATCATATATGATACAAAGT
TTCTATTCTTCAGCAAAGTCCGTAACTTCGACTATCGCCTGAGACCAGAA
GATCTCGCCGAAAACTTCAGGCGGTTGAACATGGTCGATTACTTGCTATA
CGAACATTTTAACAGAACGCTTTGGGCGAAGATTGCCGAAGAAGGCCCGG
AGTTTGACGAGGAGGTCGACTGTTACAGGAACGTCTTGAGAAAAGTGTCT
CAGTATTGCCGCACCGACACGAACAAGACGGCCATCTTCCGCAAGCACAA
GTGGCACGAGAAGTTCAAGGTCAACAGGGACATGTGTAAGATGGTGCTCA
GAAGGACAGAGGAGTGGGACGGCTTTCTCAGAAGACGATACTATGTCTAA
CGAATCGACGAAATAAAGGCGAGGCAAAATTTCAAGACTACCACAAACAA
CAGACGCCATGGGTATATGTTTAAGACGTTGATTGTAGTTGTACAACCTT
TTACTGAAGGACGATCAGCGATGGCGATGAACAGAAGACGCAGCAGTGCA
CAGCGGTTAATGAAGAGTATGGAGAACAGAGACGTGCGTCTGGCGGTGCT
CGTGGTCCTCCTGCTGCCCGTGATGACTGTCATGGCGCTGTACCTGGTCC
TCTCGCGAGAACAGGCGGTACTACAGACCACGGTGCACGGCGGCCTCACC
GAACGCGTCTTCCCGCTGGCACTCACGATTTCAGAAGAGGAAGAAGAAGG
GTTATGCATCCTGAATACGGACGCGGTGTTCATCCACACCCCCGCCTGCG
GGTCTGACGTGGTACAGTCCGTCCTTTTCCGGTTCGGCTTCCAGAAGGAC
CTGTTCGTCACCCTGCCGGTCAGACCGGGCAACCCGTCCATCGGGTCCGG
AGAGATCCTACCGGAGGACTTCCTTCATCCTTCCGTTAATTTCTCCCGCC
CGAACCAGCTCAACATCCTCGCTCACCGCGCACGGTACAACAAGGACGTC
ATGTGCAAGATGTTCCCGGAGACATCCCAGTACGTCACCATCTTAAGACA
ACCTCTTCGCAGATTCGAAACAGACTTCTTTAATTCTAAGATGTACAGAT
ACTTCAGTGAAGGGTCGCAATCAGGTGCAGAATCCTTACAGGACTACCTA
GATGATCCAAAGTACTGGGAGACCCGCAAAACCACGACATATTGTACCCG
AAACTGTATGTCTGCCGTTCTAGGCTTCCCATTGGACGATACCATGAACA
TGCGGGACACCCGAGCAACGATAGACGTCATCAAACAACTAGATTCAGAC
TTCGCTTTGGTCCTCATCTACGAGTACTTAGACCAGTCCTTGGTGCTGCT
GAAGAGACACATGTGCTGGAAGGTTCAGGACATCATATATGATACAAAGT
TTCTATTCTTCAGCAAAGTCCGTAACTTCGACTATCGCCTGAGACCAGAA
GATCTCGCCGAAAACTTCAGGCGGTTGAACATGGTCGATTACTTGCTATA
CGAACATTTTAACAGAACGCTTTGGGCGAAGATTGCCGAAGAAGGCCCGG
AGTTTGACGAGGAGGTCGACTGTTACAGGAACGTCTTGAGAAAAGTGTCT
CAGTATTGCCGCACCGACACGAACAAGACGGCCATCTTCCGCAAGCACAA
GTGGCACGAGAAGTTCAAGGTCAACAGGGACATGTGTAAGATGGTGCTCA
GAAGGACAGAGGAGTGGGACGGCTTTCTCAGAAGACGATACTATGTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000032 | genome | Sc0000032:105847..109714 + |
Properties
| Property Name | Value |
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| Transcript id | BL97185_cuf2 |
| Biotype | protein_coding |
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