|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97183_cuf5 >transcript:BL97183_cuf5-protein ID=transcript:BL97183_cuf5-protein|Name=transcript:BL97183_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=172bp
CGEITEDERDCPDSCVDYRKRNYLLQRDEIQCRDLSGCVKITKICDGQED
CSDGSDEIKCDEFCSLHGSFGDAAYWKCRGSPGCVKGEFLCNGISDCADG
SDEEDCDESCRSIGYWPCKDSIPPFPRCINGQGRCNRAVQCRDFSDEIGC
GRHIFPYTPYFVLSISLIRVLT Run BLAST on NCBI mRNA from alignment at Sc0000511:68093..73824+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97183_cuf5 ID=transcript:BL97183_cuf5|Name=transcript:BL97183_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=5732bp|location=Sequence derived from alignment at Sc0000511:68093..73824+ (Branchiostoma lanceolatum)
CTGTGGGGAAATCACAGAGGACGAGCGGGACTGTCCCGGTAGGGATTTTA
CTTTTTACGAATTGACCCGTCTATCGCAAGCAGCTAAGCGAAGTCTGCCA
AAGGTACAGTCTGACAATACGACGGTCTGCACACATCTTTGCCAATATCA
AAGGGATAGACAACCCCAGAAACAGTCGCTATTTGTATTTAAAAAGACCA
CATCTCGATGAATACAAAACCAACCAAATGTGCAAAAAATTATTTACAGA
TGAACAAATAAATATGATCCTGAAATTCAGTACTGCTCCTTCATGCAGAC
CATGGGGTGTGATGCATGATGGGAAGTATTGGTTCCTATGGGATAATTGC
TGACGTTGCAGGTCAATTTTAGGGTCAACTCAATAGAAGAATTATGTTGC
TAAGGATGGAAATTCACGCAAACGCAACACACGTTATTTCCAACATCGGA
CATGCATTTCCTACATAAGAGCGCCCCATTTTTGTGAGGGACCTTATATA
AGTCTTAAGAATGGGATGATCGACACATATTAAAGTTTATTTTTGACCCA
CAAAATGAACAATTATCCAGAAACACAGTGCAAAGGTAATTTACATAACA
TGTTACACCTGGCTGTAATTAATCTGAAGAGTACTCGTATAAGGGTTATC
AGAATATCAATACTGTATAATGCAACTGCTGCCTAGTCCAGGTTCAAGGT
TAAGTTGCAAATACAATTACGTTATTGGATTAAAAAAAAATATCATCAGC
CGAACCAGAACACACTCCTCTTGGGTTGTCTATGGCTTTAACATTGACTG
TACTTTTTGAAGCTTATTGTTAAGGCCTCATGACCTGAAATTTTATATCA
GGAATCTTTTGAATACTGGAAGAGTGGTGGTTGTGTTCCAATTTGTGCAT
AGTCAATGGCATATAGACTCCAAGGACATATTGTTAAAGGAGCATTCTAT
TCCAGAAGCGGGTATTATTTCCAGATTGATTAATATTTTTTGGGACACAC
ATGCATTCGAATTTTGGCTAAATTACCTCAGCTGTCTTTTCGACAACGAT
TCTTTTTCTAAATCCATGTACCTCCATACGGATCCGCTTTTATGTACTAG
CATGGCCAATTTCAGGTACAATTTCTCGCTAATGGTAAACCGCTTAACAA
AAGTAGTCGTGTGACTAACGCACATTTAGGAATACTGAGGATACAGAGAT
TTAGTCTCTTATGATTCATAAAGCTGCTTCAGGAGTGGAATGCTGCTTTA
AAATAATACTTTTTTGGAGCCTTTTAACCAGCTATTTGTACATATCATTT
TTTTACATGTGCCGCTTTATATAAGAATGGTATAGAAAAGTCTAGATCAG
TATACTGTATGTGATCGTAAATGACTATTGAAATACATGTGCCATAAGAA
ACATCATCTTTAAATCACGTGTTTTATTTTCACAGACAGTTGCGTGGACT
ACAGGAAACGTAACTATTTACTTCAACGAGACGAAATCCAGTGTCGTGAT
TTGTCAGGTTGTGTTAAGATCACGAAAATTTGCGATGGCCAAGAAGACTG
TTCGGACGGCTCGGACGAGATCAAATGTGGTATGCATTCTACTTAAACCC
TATCTAGACCGGGCTTTTTTGAGAATTCTTGGACGGGGGGGAGGCATATA
AAGAAATACAGAACTTCTAAACGGTATGTTGTATCATCACCAAATTTGCA
GGGAGTGATGTACACGTAAAGTTTGATAACTCTTGTAAATTTTTTGACGT
CATGACGTAATATGACGTAATTATGACGTCATCAATGTGATTTAATTGGC
TAAATAGGGAATTCCCATATTATCTAAAGGTATCAGACAAAATAGTGCGT
ATTATTGATTTTAAGGTATGACAAGACATTTAACGTCAGTGGTGACTACG
TTGACGTCAAAATGACGTCGACGAATGACGTCATGTGTTGTCAGCGATCT
CCTGGGATCCGCCATCTTGGATCGGCCATTTTGAAATTTTCAAAAATACA
TTCTTTCCCCTAACGACCCCAAATAACAATCAAAATAGACTAAATAATTA
ATCTGAATGTATCTGGTCAAGAAAATTCCAGGTTGTGACGAATTTGAAGG
CGAAAAAGCCTGACTATAGCGAATATAATGATTTTGTCCGCCATCTTGGA
TTTTGAGCGATGACGTCATCAAATTAACATAATTTATGAATATTAAATTA
TGAAAGTTACATTAAATCACATATAATGTTAGACATGTAGCAAATTAGTG
TGTTTGAGCAAGAAAACATTGGAAACAACTATATTTAAATCAAAATTAGT
GAAATTTGCATAAAATGCCTGTTCAGAAAGCCGTTGCCATGACAACACGA
AAAATGATAAACTTATACTTTTATCATAATATTGTAGCCAACTAAATTTT
AGGAAAAGTCACCAAGTTTGGTTGTCCTACCATACGTCGTTTGGCAGTTA
TACGATGACAAAGTTGGCGCGGGCACTTTTAGCCCCCCCCCCCGGTCTAG
ATAGGGTTAAGTCTTTTTTTTGTTGCTTTTTTNCTTAAACCCTATCTAGA
CCGGGCTTTTTTGAGAATTCTTGGACGGGGGGGAGGCATATAAAGAAATA
CAGAACTTCTAAACGGTATGTTGTATCATCACCAAATTTGCAGGGAGTGA
TGTACACGTAAAGTTTGATAACTCTTGTAAATTTTTTGACGTCATGACGT
AATATGACGTAATTATGACGTCATCAATGTGATTTAATTGGCTAAATAGG
GAATTCCCATATTATCTAAAGGTATCAGACAAAATAGTGCGTATTATTGA
TTTTAAGGTATGACAAGACATTTAACGTCAGTGGTGACTACGTTGACGTC
AAAATGACGTCGACGAATGACGTCATGTGTTGTCAGCGATCTCCTGGGAT
CCGCCATCTTGGATCGGCCATTTTGAAATTTTCAAAAATACATTCTTTCC
CCTAACGACCCCAAATAACAATCAAAATAGACTAAATAATTAATCTGAAT
GTATCTGGTCAAGAAAATTCCAGGTTGTGACGAATTTGAAGGCGAAAAAG
CCTGACTATAGCGAATATAATGATTTTGTCCGCCATCTTGGATTTTGAGC
GATGACGTCATCAAATTAACATAATTTATGAATATTAAATTATGAAAGTT
ACATTAAATCACATATAATGTTAGACATGTAGCAAATTAGTGTGTTTGAG
CAAGAAAACATTGGAAACAACTATATTTAAATCAAAATTAGTGAAATTTG
CATAAAATGCCTGTTCAGAAAGCCGTTGCCATGACAACACGAAAAATGAT
AAACTTATACTTTTATCATAATATTGTAGCCAACTAAATTTTAGGAAAAG
TCACCAAGTTTGGTTGTCCTACCATACGTCGTTTGGCAGTTATACGATGA
CAAAGTTGGCGCGGGCACTTTTAGCCCCCCCCCCCGGTCTAGATAGGGTT
AAGTCTTTTTTTTGTTGCTTTTTTTCTTATGACCCGGGTGCATGCTGTAT
GCTTATGAACTTAATAATATTAGCAAAGATATATATATATATTGAATGCT
TTCAGTTAAATTGAATTGAATGAAATGTAATTGATGTTAGAAAACAAGTT
TGGTTCACCAAGAAAACTTTGAAACTTCATTGTTTAAACCTGAATTAGCA
AATTTTTGTGCCTACCAGAAACCGAAACGCGAAAAACGATGAGCTAAGTT
GATTATCGACTTCAATTTCTAGCTTACAAAATTTTGTGAAAATTTAGCAA
GTTTGGTAGCTCTACAGCTAGCATAAGCCGTTCAGGGAAGGGTTTGTGAA
AACGTGGTTCTTTTGAAATTTTGTGCATAATTATGATTATCAGCTGAAAT
TAGTCACATCATGTCCTTGTTTGTCAAAAACCGAAGTAAAAAAAAAAAAG
TCAAAATATTCCTCTTGCATTGTTGAAGGAATGTATGTGTAATGATCACC
ATAATGATTGAAATTAAAATCCACTGAATAAAACATTATGGGGTCCATTT
GGACCTCCTTCCGTCCTCTAACTCACAATCAAAAAAGAAAAGAAAAGATG
TTTGCGGGTTAAGGAGCAAAGAGTTTCAGCCGTCTTTTTGTCACCTACCA
AAATCTAACATTACCTATTCTCTTTTCTGGAAGACGAATTCTGCTCCCTT
CATGGCTCGTTCGGCGATGCCGCCTACTGGAAGTGCCGTGGTTCCCCCGG
GTGTGTAAAGGGGGAGTTTTTGTGCAACGGCATTTCTGATTGCGCTGACG
GGTCGGACGAAGAGGACTGTGGTGAGGCTTTTATTACAATCTGTAGCTGT
ATTCAGAATTCTGTAAATGTACACGTCGATATTGTAATCTAAAGATTTGT
CTTTTTTTCGGTTTCAAACTACAGACGAATCGTGTAGATCTATAGGGTAC
TGGCCCTGCAAAGACTCAATCCCCCCGTTCCCAAGGTGTATCAATGGGCA
GGGCAGATGCAACCGGGCAGTACAGTGCAGGGACTTCTCGGATGAGATCG
GCTGCGGTAGACATATTTTTCCTTATACTCCGTATTTCGTGTTATCTATA
TCATTAATTAGAGTGCTTACGTAATTATACAGGTATATTTACTGTCGTTC
CTAGCGTACACCCAGCTCATAACATATTCACGTAAATGGTTATAAAAGAC
ACGAGCTATCTTTCAGCAGCTTCATTAATATTTGGCACTTTTTAAAGATT
ACTGTGGGCTTCATGCAATGGCTGGTTTCACCAAATGGGACAGAAAGATA
TTCATGGAGGGGACTGATGTGTTGTACCTACATCATGAAGTATGCATCCC
ATTTGAAAACGTTTGTGATGGACATGATGACTGGTATTTCCAAGACGAAG
TCAGCTGTTTCCAAGGTACATGTATATTCCACTACGAAGTCACTGTGGTA
ATGAGACACAAATGCATGTTATTTACTAACAAATCATCATCATCATGATC
ATCATCATCATCATCGTCGCCGCTTTCATCTGTCGACGATGCGGGCCACC
ACTGCTTTCCACGCACTAACACATGCATGTTATTTACTAACATACTTTTT
TGACTCATTCCGTTAAGTGCGAATTTCTGCTTTCACTCTAGAAGAAAAAT
ATCCGCCTGTTAGAAAAAGCCATTTATGTGTCATTCATCGATGTTATACC
AGTTTGAAATCTGTCGATATAATTGTAACACTAGAAATGGAATGCCTATT
AGTGAGCGTATGATCATGATCAAGTGGTAAATCATGTTTTTATATCTTTC
GTTTAAGAATTTACTTGTTTATCTGTTTGATGAAGAGACGGACAGAAAGC
TCTCAATATCTGTTATCATCAGCATTTGAAATTTTTGAAGTTTCCAGATT
GTTTCTCGAGAATATATGATCATATTACTCATTTTAGGCTTCAACAACCT
TATCGTCAGTCTAACTACTGATGACTGACAGATATCCTGGTGATTTTGTG
AAAAATACCATCAGAATTCAAATAGCAGTCATTGGAGCAGTTCAATCGCC
TCGATATGACAAATTGCTGGTGATGCAATTAAGTTGAGACAGATATTATA
AACTGATAGACCACAATGTAACTTGCACACACCGTTCTCTTACAGGGATG
ATAGACCCATCAATGTGTGTGAGATGTCCACTCTTCGAAAATACCTGTTT
GCCTTTATCAGACGACAGCTTTTGTGATACAATAATACAATGTCGTGACG
GGGTGGATGAAATGAATTGTGGTCAGTATATT Coding sequence (CDS) from alignment at Sc0000511:68093..73824+ >transcript:BL97183_cuf5 ID=transcript:BL97183_cuf5|Name=transcript:BL97183_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=2076bp|location=Sequence derived from alignment at Sc0000511:68093..73824+ (Branchiostoma lanceolatum)
TGTGGGGAAATCACAGAGGACGAGCGGGACTGTCCCGACAGTTGCGTGGA
CTACAGGAAACGTAACTATTTACTTCAACGAGACGAAATCCAGTGTCGTG
ATTTGTCAGGTTGTGTTAAGATCACGAAAATTTGCGATGGCCAAGAAGAC
TGTTCGGACGGCTCGGACGAGATCAAATGTGACGAATTCTGCTCCCTTCA
TGGCTCGTTCGGCGATGCCGCCTACTGGAAGTGCCGTGGTTCCCCCGGGT
GTGTAAAGGGGGAGTTTTTGTGCAACGGCATTTCTGATTGCGCTGACGGG
TCGGACGAAGAGGACTGTGACGAATCGTGTAGATCTATAGGGTACTGGCC
CTGCAAAGACTCAATCCCCCCGTTCCCAAGGTGTATCAATGGGCAGGGCA
GATGCAACCGGGCAGTACAGTGCAGGGACTTCTCGGATGAGATCGGCTGC
GGTAGACATATTTTTCCTTATACTCCGTATTTCGTGTTATCTATATCATT
AATTAGAGTGCTTACGTAATGTGGGGAAATCACAGAGGACGAGCGGGACT
GTCCCGACAGTTGCGTGGACTACAGGAAACGTAACTATTTACTTCAACGA
GACGAAATCCAGTGTCGTGATTTGTCAGGTTGTGTTAAGATCACGAAAAT
TTGCGATGGCCAAGAAGACTGTTCGGACGGCTCGGACGAGATCAAATGTG
ACGAATTCTGCTCCCTTCATGGCTCGTTCGGCGATGCCGCCTACTGGAAG
TGCCGTGGTTCCCCCGGGTGTGTAAAGGGGGAGTTTTTGTGCAACGGCAT
TTCTGATTGCGCTGACGGGTCGGACGAAGAGGACTGTGACGAATCGTGTA
GATCTATAGGGTACTGGCCCTGCAAAGACTCAATCCCCCCGTTCCCAAGG
TGTATCAATGGGCAGGGCAGATGCAACCGGGCAGTACAGTGCAGGGACTT
CTCGGATGAGATCGGCTGCGGTAGACATATTTTTCCTTATACTCCGTATT
TCGTGTTATCTATATCATTAATTAGAGTGCTTACGTAATGTGGGGAAATC
ACAGAGGACGAGCGGGACTGTCCCGACAGTTGCGTGGACTACAGGAAACG
TAACTATTTACTTCAACGAGACGAAATCCAGTGTCGTGATTTGTCAGGTT
GTGTTAAGATCACGAAAATTTGCGATGGCCAAGAAGACTGTTCGGACGGC
TCGGACGAGATCAAATGTGACGAATTCTGCTCCCTTCATGGCTCGTTCGG
CGATGCCGCCTACTGGAAGTGCCGTGGTTCCCCCGGGTGTGTAAAGGGGG
AGTTTTTGTGCAACGGCATTTCTGATTGCGCTGACGGGTCGGACGAAGAG
GACTGTGACGAATCGTGTAGATCTATAGGGTACTGGCCCTGCAAAGACTC
AATCCCCCCGTTCCCAAGGTGTATCAATGGGCAGGGCAGATGCAACCGGG
CAGTACAGTGCAGGGACTTCTCGGATGAGATCGGCTGCGGTAGACATATT
TTTCCTTATACTCCGTATTTCGTGTTATCTATATCATTAATTAGAGTGCT
TACGTAATGTGGGGAAATCACAGAGGACGAGCGGGACTGTCCCGACAGTT
GCGTGGACTACAGGAAACGTAACTATTTACTTCAACGAGACGAAATCCAG
TGTCGTGATTTGTCAGGTTGTGTTAAGATCACGAAAATTTGCGATGGCCA
AGAAGACTGTTCGGACGGCTCGGACGAGATCAAATGTGACGAATTCTGCT
CCCTTCATGGCTCGTTCGGCGATGCCGCCTACTGGAAGTGCCGTGGTTCC
CCCGGGTGTGTAAAGGGGGAGTTTTTGTGCAACGGCATTTCTGATTGCGC
TGACGGGTCGGACGAAGAGGACTGTGACGAATCGTGTAGATCTATAGGGT
ACTGGCCCTGCAAAGACTCAATCCCCCCGTTCCCAAGGTGTATCAATGGG
CAGGGCAGATGCAACCGGGCAGTACAGTGCAGGGACTTCTCGGATGAGAT
CGGCTGCGGTAGACATATTTTTCCTTATACTCCGTATTTCGTGTTATCTA
TATCATTAATTAGAGTGCTTACGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000511 | genome | Sc0000511:68093..73824 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97183_cuf5 |
| Biotype | protein_coding |
|
