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transcript:BL97179_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97179_cuf3
Unique Nametranscript:BL97179_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97179_cuf3

>transcript:BL97179_cuf3-protein ID=transcript:BL97179_cuf3-protein|Name=transcript:BL97179_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=127bp
QVYFGKTTDVTGVAISGGGYAWGMGSWVTSFTLAFSMDGDSWTPYGGSDG
NVQVFQGNKDPHSKVSRPLDNPVTSRYLRLCPTGYHGWVALKMEVYVTND
EDTWLEQGEYTSLVADPDPLHPRAFKR
Run BLAST on NCBI

mRNA from alignment at Sc0000050:133205..134578-

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97179_cuf3 ID=transcript:BL97179_cuf3|Name=transcript:BL97179_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=1374bp|location=Sequence derived from alignment at Sc0000050:133205..134578- (Branchiostoma lanceolatum)
CAGGTTTACTTTGGCAAGACCACCGATGTGACCGGAGTGGCCATCAGCGG AGGGGGCTATGCATGGGGCATGGGCAGTTGGGTGACGTCATTCACCCTAG CCTTCAGTATGGACGGCGATTCTTGGACGCCGTACGGAGGCAGCGACGGG AACGTGCAGGTATGGCGGGTTGATCTTCACCCCCTCTGGCGGAACATACA GAACCTGCAGTGTAGAAAAATGCAGACTGGGACACGCTCGCGCACACACA TTGCACATACAGATACACAGAGACACACACAGTACACAGAAAGAGAGACA CACACATATATACAAACACATACATATGCAAACACACATACATTCACACA CACACACACACACACACAAACAAACAAACACAAACACAGAGAAGTAGAGA TATGCACGAACAGACACACATACTAACCAGGGGTAACTAGATTTAGCCAA ACTCTAAAGACCTAACAGGTGTCATGACATGCAGTCAATTCGCAATTTCG GTAGAGGTATTTTGTTCCTTAGCATATTGCAGATTACTCCCCACCTCCAC CATTCAAACACACACACAAACGAACTCACACACACGGAGAAACGGACACA GACGAGCCAAATTTCCTAACTGTCTGAATCCTTTCTTTACCTGTATCTTT ACCTTTTGCACAGGTGTTCCAGGGAAACAAAGACCCGCACAGCAAAGTGA GTCGCCCTCTGGACAACCCTGTGACGTCACGCTACCTCCGCCTGTGCCCG ACAGGTTACCACGGTTGGGTCGCCCTGAAAATGGAGGTGTACGTCACGAA CGGTTAGTAGCGTGCGTAGTCCAGTGGTTAGTGCCCCTGCCCCTGAACCA AGAAGCTGTGAGTGCGCAATCCCGCTGTATGTGTCACTCACCCGGCATGC GCGCTACTGTTCACTGTGCTTGTCGAAAAGAGCTAGGGGAATTTCCCCTG TACAATGAACCTGTAAGCGTCTGTCTTCACTGTCACAACCTGAGGAAGAA CACCTCTCTAGTGAGCTAAACTGGTTCGAGATCACTTCTTCACTTTCTTT CGCTAAACGGGTGCAGGTCTAGCAGAAATGACAATAATGATTACTGACGT CCATATAAGAAATTCAATGTAGACATGATGGCTTCTGTTGGGGGTAACGA CGACAAACAGTGACAGTCAAAACTGTCTATAGTTACCAGTTACTACCCAT AGGAGTTTGGACGTCGTTAGCGTCTTACAGAGGTTTTACAGAGAGAACTT TAAGACAAATCTAAACAGCAGAAGTGTAATGTTTTTCAGACGAAGACACC TGGTTGGAGCAGGGAGAGTACACTTCACTGGTGGCCGACCCTGACCCCTT ACATCCCCGGGCATTCAAGCGGGT

Coding sequence (CDS) from alignment at Sc0000050:133205..134578-

>transcript:BL97179_cuf3 ID=transcript:BL97179_cuf3|Name=transcript:BL97179_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1143bp|location=Sequence derived from alignment at Sc0000050:133205..134578- (Branchiostoma lanceolatum)
CAGGTTTACTTTGGCAAGACCACCGATGTGACCGGAGTGGCCATCAGCGG
AGGGGGCTATGCATGGGGCATGGGCAGTTGGGTGACGTCATTCACCCTAG
CCTTCAGTATGGACGGCGATTCTTGGACGCCGTACGGAGGCAGCGACGGG
AACGTGCAGGTGTTCCAGGGAAACAAAGACCCGCACAGCAAAGTGAGTCG
CCCTCTGGACAACCCTGTGACGTCACGCTACCTCCGCCTGTGCCCGACAG
GTTACCACGGTTGGGTCGCCCTGAAAATGGAGGTGTACGTCACGAACGAC
GAAGACACCTGGTTGGAGCAGGGAGAGTACACTTCACTGGTGGCCGACCC
TGACCCCTTACATCCCCGGGCATTCAAGCGGCAGGTTTACTTTGGCAAGA
CCACCGATGTGACCGGAGTGGCCATCAGCGGAGGGGGCTATGCATGGGGC
ATGGGCAGTTGGGTGACGTCATTCACCCTAGCCTTCAGTATGGACGGCGA
TTCTTGGACGCCGTACGGAGGCAGCGACGGGAACGTGCAGGTGTTCCAGG
GAAACAAAGACCCGCACAGCAAAGTGAGTCGCCCTCTGGACAACCCTGTG
ACGTCACGCTACCTCCGCCTGTGCCCGACAGGTTACCACGGTTGGGTCGC
CCTGAAAATGGAGGTGTACGTCACGAACGACGAAGACACCTGGTTGGAGC
AGGGAGAGTACACTTCACTGGTGGCCGACCCTGACCCCTTACATCCCCGG
GCATTCAAGCGGCAGGTTTACTTTGGCAAGACCACCGATGTGACCGGAGT
GGCCATCAGCGGAGGGGGCTATGCATGGGGCATGGGCAGTTGGGTGACGT
CATTCACCCTAGCCTTCAGTATGGACGGCGATTCTTGGACGCCGTACGGA
GGCAGCGACGGGAACGTGCAGGTGTTCCAGGGAAACAAAGACCCGCACAG
CAAAGTGAGTCGCCCTCTGGACAACCCTGTGACGTCACGCTACCTCCGCC
TGTGCCCGACAGGTTACCACGGTTGGGTCGCCCTGAAAATGGAGGTGTAC
GTCACGAACGACGAAGACACCTGGTTGGAGCAGGGAGAGTACACTTCACT
GGTGGCCGACCCTGACCCCTTACATCCCCGGGCATTCAAGCGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97179gene:BL97179Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97179_cuf3-E1BL97179_cuf3-E1-1564476830-225356Branchiostoma lanceolatumexon
BL97179_cuf3-E2BL97179_cuf3-E2-1564476830-225354Branchiostoma lanceolatumexon
BL97179_cuf3-E3BL97179_cuf3-E3-1564476830-225352Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97179_cuf3transcript:BL97179_cuf3-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000050genomeSc0000050:133205..134578 -
Properties
Property NameValue
Transcript idBL97179_cuf3
Biotypeprotein_coding