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transcript:BL97178_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97178_cuf2
Unique Nametranscript:BL97178_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97178_cuf2

>transcript:BL97178_cuf2-protein ID=transcript:BL97178_cuf2-protein|Name=transcript:BL97178_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=194bp
HSGPAPAGRRLKRASERYLDTQPQSGDMHSGPAPAGRRLKRASEKYHDTQ
ACDGINDCSTGKDEANCEEMECVLRCETESGDPCIPKRWICDNTADCLHG
EDEEECKNEKASRGCFFKCMNTAAFVAEICVPPHQLADGQENCRQGEDED
PRQVELALETWFGSCSYDCPSVYGNASCVPDLFVCDGTADCLGE
Run BLAST on NCBI

mRNA from alignment at Sc0000050:127167..129074-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97178_cuf2 ID=transcript:BL97178_cuf2|Name=transcript:BL97178_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=1908bp|location=Sequence derived from alignment at Sc0000050:127167..129074- (Branchiostoma lanceolatum)
TGCACTCCGGACCCGCTCCAGCCGGCAGGAGGTTGAAGAGAGCCTCTGAA AGGTACCTCGACACCCAGCCTCAATCCGGTGACATGCACTCCGGACCCGC TCCAGCCGGCAGGAGGTTGAAGAGAGCCTCTGAAAAATACCACGACACCC AGGCTTGTGACGGCATCAATGACTGCTCGACGGGAAAGGACGAGGCTAAC TGTGAAGAAATGGGTAAGTCGGCCAAGTTCAATGTCCTCATATGCCCTCA ATTAGACATAGCAAAACTATGCTGGTCTAGATATTTACATGTACAAAAAA GAAGTCGAACACAGTAACTTATTATTGTACGACTAACAGTTATGGTTATT AGATCTAAAACGCTTTTTTCTTTCTTCCGACCTTCCTTGTTATTAATGTA TAATGAGCATATTTTCCTTCTCTGTTACTAGAACTCAAGCATTCATTATC ATTTTATCACGAACATCCACATGTATTCCATTTTTGTATACAGTTAACTA GATCATTCATTTATTCATTCATTCATTCATTCATTCACTTATTCATTCAT TGTTCCCGTGACAGAGTGTGTGCTGCGCTGTGAGACGGAGTCAGGTGACC CGTGTATTCCCAAGAGATGGATCTGTGACAACACCGCGGACTGTCTGCAT GGGGAGGATGAAGAGGAGTGCAAGAATGAGAAAGGTAAATATCAGATTGG TTACTAATGAAGATAGTTACATGTAAACCCATCACCTTCAACTTGCCCCA TCCTCATCTTGAGGGTCGGGGACCATGGTCGCCTTCAGCACAAGCTTCCT CCATCCTTCCCTGTCCTACGTCCTCTGTGTATAGTTTGCCAGTGACCTTC CTGTCCAGTCCCTGATGCCATCTCCCCATCTCCTGTGTGGCCTCCCCTGC TTCTGGTGCCACAGATCTTCCCTTTACCTTAACATTGGTGAATAGTTTAA TCAGGTTAATGATCTCTGGTTATAGAGACCATTAACATACAAGCAATGTC TTTCACATGCCGACGCTTCGATGGACCGCTGCCTATTTCACGGAGGTATG AAATCTTCAACTTCTTATATTTCCTGCAGCATCCAGGGGCTGCTTTTTCA AGTGTATGAACACAGCCGCTTTTGTGGCGGAGATTTGCGTCCCACCACAC CAGCTAGCGGACGGCCAGGAGAACTGCAGGCAGGGAGAAGACGAAGATCC AAGACAGGGTAAGAGGTAACCTGGTCTTCGGTGTCTAGCGGCCCATAGGT CAGCAGGTTTACTATAGCAGGGTATATTTTTACTGGGAGGGGTTGCTAGC CCTCCCCCCTTTAACGTGCTCGAGGCAACTCCTCAAACACAAGACCCCCA TTTTACGCCCCTTCCGAAAGACGGGTGCAGCCCCAACCGAGATGCTCCTC CCAGGATTTGAACCTGGGTCTCCAGTCTCTCCCAGGGCTGTAGGCTTGGT TTTATCGGCACTGTAAGCTTCTGTCCCGCCTGTCCAACTTAGCCAACATC GGAGACTTGACCAGTCTCTCCAAGGGCAGTTATACTAGTGGAGCATCCCT GTAGTTCTACAGTACTGGTACATAGTAGCAGACTCACAATAATAACTAAA AATATAACCTGCTACAGAAACGGAAAGGAAACATGCTGCCCTATGTGCCA CTAGACACTACAGGGGCCTGAACGAAGGAACGAACGAAGTCTTCTATTAG TATACATACTCCAACCTTTTGGACTCTATCTGTAACTGCTAAAAACTGGT CCTGGCTGACGATTGTACGAATTTTGGATTACAGTTGAACTGGCTCTGGA AACCTGGTTCGGTTCCTGTAGCTACGACTGCCCGTCCGTCTACGGTAACG CGTCCTGCGTCCCGGACTTGTTCGTCTGTGACGGGACCGCCGACTGCTTG GGCGAGGA

Coding sequence (CDS) from alignment at Sc0000050:127167..129074-

>transcript:BL97178_cuf2 ID=transcript:BL97178_cuf2|Name=transcript:BL97178_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2328bp|location=Sequence derived from alignment at Sc0000050:127167..129074- (Branchiostoma lanceolatum)
CACTCCGGACCCGCTCCAGCCGGCAGGAGGTTGAAGAGAGCCTCTGAAAG
GTACCTCGACACCCAGCCTCAATCCGGTGACATGCACTCCGGACCCGCTC
CAGCCGGCAGGAGGTTGAAGAGAGCCTCTGAAAAATACCACGACACCCAG
GCTTGTGACGGCATCAATGACTGCTCGACGGGAAAGGACGAGGCTAACTG
TGAAGAAATGGAGTGTGTGCTGCGCTGTGAGACGGAGTCAGGTGACCCGT
GTATTCCCAAGAGATGGATCTGTGACAACACCGCGGACTGTCTGCATGGG
GAGGATGAAGAGGAGTGCAAGAATGAGAAAGCATCCAGGGGCTGCTTTTT
CAAGTGTATGAACACAGCCGCTTTTGTGGCGGAGATTTGCGTCCCACCAC
ACCAGCTAGCGGACGGCCAGGAGAACTGCAGGCAGGGAGAAGACGAAGAT
CCAAGACAGGTTGAACTGGCTCTGGAAACCTGGTTCGGTTCCTGTAGCTA
CGACTGCCCGTCCGTCTACGGTAACGCGTCCTGCGTCCCGGACTTGTTCG
TCTGTGACGGGACCGCCGACTGCTTGGGCGAGCACTCCGGACCCGCTCCA
GCCGGCAGGAGGTTGAAGAGAGCCTCTGAAAGGTACCTCGACACCCAGCC
TCAATCCGGTGACATGCACTCCGGACCCGCTCCAGCCGGCAGGAGGTTGA
AGAGAGCCTCTGAAAAATACCACGACACCCAGGCTTGTGACGGCATCAAT
GACTGCTCGACGGGAAAGGACGAGGCTAACTGTGAAGAAATGGAGTGTGT
GCTGCGCTGTGAGACGGAGTCAGGTGACCCGTGTATTCCCAAGAGATGGA
TCTGTGACAACACCGCGGACTGTCTGCATGGGGAGGATGAAGAGGAGTGC
AAGAATGAGAAAGCATCCAGGGGCTGCTTTTTCAAGTGTATGAACACAGC
CGCTTTTGTGGCGGAGATTTGCGTCCCACCACACCAGCTAGCGGACGGCC
AGGAGAACTGCAGGCAGGGAGAAGACGAAGATCCAAGACAGGTTGAACTG
GCTCTGGAAACCTGGTTCGGTTCCTGTAGCTACGACTGCCCGTCCGTCTA
CGGTAACGCGTCCTGCGTCCCGGACTTGTTCGTCTGTGACGGGACCGCCG
ACTGCTTGGGCGAGCACTCCGGACCCGCTCCAGCCGGCAGGAGGTTGAAG
AGAGCCTCTGAAAGGTACCTCGACACCCAGCCTCAATCCGGTGACATGCA
CTCCGGACCCGCTCCAGCCGGCAGGAGGTTGAAGAGAGCCTCTGAAAAAT
ACCACGACACCCAGGCTTGTGACGGCATCAATGACTGCTCGACGGGAAAG
GACGAGGCTAACTGTGAAGAAATGGAGTGTGTGCTGCGCTGTGAGACGGA
GTCAGGTGACCCGTGTATTCCCAAGAGATGGATCTGTGACAACACCGCGG
ACTGTCTGCATGGGGAGGATGAAGAGGAGTGCAAGAATGAGAAAGCATCC
AGGGGCTGCTTTTTCAAGTGTATGAACACAGCCGCTTTTGTGGCGGAGAT
TTGCGTCCCACCACACCAGCTAGCGGACGGCCAGGAGAACTGCAGGCAGG
GAGAAGACGAAGATCCAAGACAGGTTGAACTGGCTCTGGAAACCTGGTTC
GGTTCCTGTAGCTACGACTGCCCGTCCGTCTACGGTAACGCGTCCTGCGT
CCCGGACTTGTTCGTCTGTGACGGGACCGCCGACTGCTTGGGCGAGCACT
CCGGACCCGCTCCAGCCGGCAGGAGGTTGAAGAGAGCCTCTGAAAGGTAC
CTCGACACCCAGCCTCAATCCGGTGACATGCACTCCGGACCCGCTCCAGC
CGGCAGGAGGTTGAAGAGAGCCTCTGAAAAATACCACGACACCCAGGCTT
GTGACGGCATCAATGACTGCTCGACGGGAAAGGACGAGGCTAACTGTGAA
GAAATGGAGTGTGTGCTGCGCTGTGAGACGGAGTCAGGTGACCCGTGTAT
TCCCAAGAGATGGATCTGTGACAACACCGCGGACTGTCTGCATGGGGAGG
ATGAAGAGGAGTGCAAGAATGAGAAAGCATCCAGGGGCTGCTTTTTCAAG
TGTATGAACACAGCCGCTTTTGTGGCGGAGATTTGCGTCCCACCACACCA
GCTAGCGGACGGCCAGGAGAACTGCAGGCAGGGAGAAGACGAAGATCCAA
GACAGGTTGAACTGGCTCTGGAAACCTGGTTCGGTTCCTGTAGCTACGAC
TGCCCGTCCGTCTACGGTAACGCGTCCTGCGTCCCGGACTTGTTCGTCTG
TGACGGGACCGCCGACTGCTTGGGCGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97178gene:BL97178Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97178_cuf2transcript:BL97178_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97178_cuf2-E1BL97178_cuf2-E1-1564476830-225346Branchiostoma lanceolatumexon
BL97178_cuf2-E2BL97178_cuf2-E2-1564476830-225343Branchiostoma lanceolatumexon
BL97178_cuf2-E3BL97178_cuf2-E3-1564476830-225341Branchiostoma lanceolatumexon
BL97178_cuf2-E4BL97178_cuf2-E4-1564476830-225339Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000050genomeSc0000050:127167..129074 -
Properties
Property NameValue
Transcript idBL97178_cuf2
Biotypeprotein_coding