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transcript:BL97172_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97172_cuf3
Unique Nametranscript:BL97172_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97172_cuf3

>transcript:BL97172_cuf3-protein ID=transcript:BL97172_cuf3-protein|Name=transcript:BL97172_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=178bp
MDILRGGHKKGMTAPHVCCAGGTWYVELAEEDMEKTLGCDLKKDIVTCEV
PYGGVLFLNNCIPHRSLENYSDEIRWSLDLRWQDPAKPSGFWGDKKHILM
RTEEDPGYKPVWDGFVDVTKTLQYEEKMQKGADQESNDDEFNPTIQGPWM
LRWKIVHHNRHTKGIEEGHDKMSTWHKA
Run BLAST on NCBI

mRNA from alignment at Sc0000028:1064249..1069903+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97172_cuf3 ID=transcript:BL97172_cuf3|Name=transcript:BL97172_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=5655bp|location=Sequence derived from alignment at Sc0000028:1064249..1069903+ (Branchiostoma lanceolatum)
TTATGTAAGCACATACGGGAGAAGATGAAAGAGCTGGACTTTAACCACCC AAGCAAAGGCTACAGCACAGTCTTAGCAGAAACTAGGCTACGAGTTAAAC ACGCGAGCTGTGGAGAACTGAGCTGTGTGGATTCACAAGGAGTTGTAGAG AATGATGCAGAGACAATGAACTTTGAAAGTGAAACACTAAAGACCTTTAA AGAACTCTGAGAGTTATTTGTACAATACACAGAAACAGTTTTTTATAGAT ATGATATGATAGATCTGATCGAATGTTTGTTTTTTAATGTCCCAATGGTC ATCAGTAGACTAGACGTGTGGGGCATGGGATACCCCTGGCAGGTTCGTTC ACCTGGCCTCTGAGAGATTGTAAATATGAGTACGGAATAACAACAATATA AGAATATAATTATTTTATAAAACAGGATCGCTATGTACCACATGTTAAGT GTCATGGCATCCTCTTTGTAAATACTTCAACTATGCATCGCTCTCCCAAG GGAGGAATAAAGTACAAGAAAGAGAATGAATGAATGAACGAATGGTTTAA TCAATAAATAAATAAATAAATAAACAAAGTCATGATCTACATGGGCTTCT TAGATCCAGATATTTTGAATCAGATTCCAATGTTTTCTACAGAAATGTGC ACCGTCTAACAATGTTTATTTCCAGACAACGCCTACCTGCAGCCCTCGTC TCTCGGCACCCTCCAGCCCACCGCCTGGATCCCGCTGCTGAACGCCACTA CCAAGAATGGATGTATGCAGGTCCGCACGTCCTACAAGGATGCAAATTGT GCAAATTCGGACTTAATTTTCATAATTGAATAAAATAAATCATATACTTC CGATCAAGGTATATAACTTTTGGCAGGTGGAACATAAACAGATGCAACAT ATGCAAATTCGAGCATATTTTGCATACTTGATGCAAAATGCCTGAATTAA ATACTTCTAAACATACAATACTGTATGTAAGTTTGGTAGAGAAGACCTTA TTTCACAATATGTCTGCAAAAGATGAAAATATTTCATGGAGGTATGAGGC ACCGGAACTCTTGTTAATAGCAGGATAAATACAGGATTTACTTCACCTGA AAGCGTCTGGCCATTGAAAACTACCCCATATCTTCAGTGTCTTAAAAGTT ACGGATTGTTTACCATGTGCCATCCACACCCCAAGCCCCTCCAACAACAA AAAAACGCCCCTGCAGTTCCAGAGGAAGCTGCTAGAGGGCCCAAACCTAC ACCACTTATTTATTACATCACAAGCTATCAGCCACCCAAAAATCAAGACC ATATCACGTCCATGTTAAAAGTTACAAAAACGAAAGTTCTGCTGCAGTAC CAAGGTCACATACCAGGGGGCCAAAATCTTCCTAGAATTTCAGCTTTACA ACACCCGCCCACATACTAAATATCATCGTAATCCATCAAGAGGCTCTTGA GTTATGCTGACTGGAGTGGTGCGGAAACACAAACAGACAAACAAACAGAC ACACCCAAAACAATATCTCCATTTTTCATGGAGATAATAAGATGCAAACC CTGTACATGTGCTCCAGATTCTCCGTGGCGGCCATAAGAAGGGCATGACG GCTCCACACGTCTGCTGTGCCGGCGGGACCTGGTACGTGGAGCTGGCGGA GGAGGACATGGAGAAAACACTCGGTAGATATCTTTCTATTTGCCCTTGGC TAGCTTTCTATTCCGGTATTACCATCGCCTCCGTTTTACAAGGGCTGTAA ATGCATTAAAGTTCGCGTAGTTTTTATTTCGCGCTAAGGCGAAAATGGAG TGTTCGCGGTGATTTTAAGTTTGCGGGAGTGCTCTAGTCACATGCTGCTA CAGTATTGGACAAAAATGTTCGCGGTGGTTTTAAGTTAAAACCGCGAATA TAAAGCCACCGCGAACATTTCTGCATTTACAGTACCTGTCATGAACATAA CAGAAATGAAATGAACGGGAAATAGCTGAAAATCTAATTGAATTGAACAG ATAACTAATCAAGGGCATATTTGTTGCTCCCGCTGGTAGGCTGCGACCTG AAGAAAGACATAGTGACGTGTGAGGTGCCCTATGGTGGTGTGCTCTTTCT CAACAATTGTATCCCACACCGCAGGTAAGGGCTTTCAAGGTTTACATCTC CCCAAGTAGGATGTGTGTGTTTGTGTGTGTGTGTGTGTGTTTGTGTGTGT GTTTGTGTGTGTGTTTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTATGT GTTTATGTGTGTGTGTTTATGTGTTTATGTGTGTGTTTATGTGTTTATGT GCGTGTGCGTGAGTGTGTGTGTGTATGTGTTTGTGTGTGTGTGTGTGTGT GTTTGCCTGTGTGTGTATCTTTAGATGGATATTGGTGTTTCTGCAGAGTA CCTGTTGTTTATGTTTGCTCTGTCAGAGGGCGCTAATACTACTGAAATAG CTAACCACTTATAAGGGGTTACAGTCTGGCTGCCTTTTTCCCGTCCAAGC TTGGAAAGCTACTCACAGACAAGATTCGGTGGTCTTGACCTCCGCTTAAA GGACCCGAACAAACCGTTAGGGGTCATCTTTGCGCAAAGATCCTTTCTAT TCTATTCAGTCACTCGTTCATTCATTCACCCTTCGCCTAGGAGATTGTAT TTTCGGGTGCGTGTGTCAGCTTGTGTGTCTGTCTGAGTGTGTGTCTGTAA ACATGGTAACTCAAGAATACCTGGATGAATTATCTTGATATTTGATATGT GGGTAGGTCTTGATAAGGTATCAAAATTATGTAATTCGGGGTTCCTTAGC AGTGGAACTTCTGGTTTTGATATCTCGTTTATCCTCTTCGCAGTCTGGAG AACTACTCAGACGAGATCCGGTGGAGTCTTGACCTCCGATGGCAGGACCC CGCCAAACCGTCCGGCTTCTGGGGAGACAAGAAGCACATCCTCATGAGGA CCGAGGAGGATCCTGGGTACAAGCCTGTCTGGGATGGGTTTGTTGACGTC ACCAAAACCCTGCAGTACGAGGAAAAGATGGTAAGATGTGCATAGTTGGC ATAGTATATCATGTGCAAAATGTTTATGTGATGGGCGAAGTGTGTAATTA TGTCGCCATGTGTTTTAATAACACAGAAGAAGCTGCTAGAACCTAGATGT ACGGTAATTGAAGGGCAAATTTGCAGTTTCCAACGAACGTCATAGGTCAA TGACCCTGAGCACAGCCAATCCTAATGCGCTATTGGTTACATACAGGACT GTCATTAAGAAAGCAGGGAGATATTGGTAAATATACATGCTGTTCATAAT CTATTGCAACCTGATGCTGAATTGCGAGTAAGAAACATGGTTATGTTTTG TGTCAATAACCTCCATTAACAATAATCCGCCGGGTTACTTAAATCCGCCA CTTTGAAAAACAGTGAGTTTCAGAGATCTCTAGTGCAGCAAAGGTATGCA CAGCTTAGACACACAGGAGTGCATTATACTGGGGGACGTTGGGTTGGAGA TCTCTTTGGACGTATTATTTCAGGGTGCCGAAATTTTGTACCCTGGTGAA ATATGTTAATAGATGTTACATATTTTTCTGATATATTTCACAGCAGAAAG GGGCAGACCAGGAGTCGAACGATGACGAGTTTAACCCGACCATCCAGGGC CCGTGGATGCTTCGCTGGAAGATCGTGCATCACAACAGACACACCAAGGG GATAGAGGAGGGGCATGACAAGATGTCTACATGGCACAAAGCGTAGGGTA CAAAACATAGTGTCTACAAGACAATATGAGGACTAGAAATAGTCATGCTT TTAGGTACCGGAGTAATCAGCCAAGGATTGATGTGTTCAAAAATTCGTAT TTTCCGAGAACCATAGTAGAATGGAACTCAAGTACTGTAGGAGCATCTTC ACTAAGTAGCTTTAAAGAACGGTTACAGTCAGATATGCAAAGACTAGGTG TAACAGGCCGTTCGGTGTAATATGACCAGCTGCTACCGCGCCGCGTGCCT GCGAAGCTGGTGTGTTACGCCTAATGGCGGTTGTACCGGCTATATAGATA CAGATGACAGTCAAACTAAACTGGCTATAGGGAGAATAATTTGCCAGGGG AGTTTGGCCACCATAAGGGGAAATGTTAATCTTTCAGCGGACTGACTCTC CTGGCTAATTATTCTCCTTTGGGCCGAATTCTACCCCCGTAGAAAGGCCT AGTGGAGGCTATACAAAACATAATCAATCAAATCAATCAATCAAAGTTTA TTGCACAACAACTGTAACGGGCACGACGTATGGCAAGTTCGTAAGTAGCA CAAAATATCAAGACATATATGTCTTTGCTTATTAACAATACTAATTGATT CTACAAAAACTACGGTATCCAATAAGAATTATATAGAATACATATATGGA CGTATATTACATGATACACAGGAAACATCAATTGCGTCAGAGATTAATCG CACACACGAGAAACTAGGGGGACCGACTCAAACATATAATAGAAGTCCAC ACATAGCTAATCTTCTCCTTGATCAGTCAAGATGTAGCCACATACCAAAA GTCTTAAAAATCTACCACTAGCTTCTTGAATTATGCTGTTAAACTACNCT AGCTTCTTGAATTATGCTGTTTAACTACTAAAAAACGGAAACACAAGCTG CACAAAAATACATTCTCACAACGCATCATCATTATCATCATACGATTCAA ACATGGTGTTGCCAATGATAATGTTGAATGGTTTCTGTTTGTACACTGGC TGTGCATTTGCTATGCTTTGATTCAAAGGGACATACCAAGAGGTCTATCT GGTACAAGGCATAGAATAACAAACACACCAAGCCAAAAATGTAACAAGAG GGCACACAAACGTAATCAGCTCCTCGATCATTTTGGATCAATGTTGATCG TTGATCTGTAATTTCCAACGCCAAAAAAATTGGACAACCAAATCTTCGAC TTTGGTCTAAAGTTTGTTGATGAATAAGCAAAGCTTAGTCACATGCCAAA TATCGTAACAGCTTCTTGAGTTATTTAATATCAAACATAAAATCACAAGA TGGCAATCACTTGCTACCGAAACATAACCTACATGATGATGGTAATGATA CAGCTCAGACGGGAATATTCTTACCCCATGACCTCAATAAAAAGCGGCCT ACAAGCCGATTTGAGCTTCTTATGAATGAGCACTATGGCTCAAAATAATG ATGGCGAATGCTGTTATGTTACAGTATGTAACCCTGCTGTCATTTCATAG ATAATGACAACCATTTTCCTTGTCACATTCTGTGATCTTTTGAGTACTAT AACATTTACAGGTTCTTCGCTACGAAATGACTGCAATTTTAGAAGGTTGT GTAAGCTCGAATATTGTTATCCGTGACCAGATACGTGTTTTTATAGGAAT AAGGAAATATTGGGAGTCATTGTACCCTGTGATCTAGTGTCACTGCTCGA GACCAATAATTGGGAATACGTGCACAGTGCACCTTATGTAAATATGTAGG TGCACAGAAAATGTGTGGGGCACAAAAAGAAATAAAGTTAAAGCAAAACG TAAATACAAATATCACTGCCTCTCTTCAAAACTTGAATGTGAAATAGCTA GCTTCAAATTTTCATCAAGTAATACATGCTCAACAAATGTTTCATCATTT TTCCT

Coding sequence (CDS) from alignment at Sc0000028:1064249..1069903+

>transcript:BL97172_cuf3 ID=transcript:BL97172_cuf3|Name=transcript:BL97172_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2685bp|location=Sequence derived from alignment at Sc0000028:1064249..1069903+ (Branchiostoma lanceolatum)
ATGGATATTCTCCGTGGCGGCCATAAGAAGGGCATGACGGCTCCACACGT
CTGCTGTGCCGGCGGGACCTGGTACGTGGAGCTGGCGGAGGAGGACATGG
AGAAAACACTCGGCTGCGACCTGAAGAAAGACATAGTGACGTGTGAGGTG
CCCTATGGTGGTGTGCTCTTTCTCAACAATTGTATCCCACACCGCAGTCT
GGAGAACTACTCAGACGAGATCCGGTGGAGTCTTGACCTCCGATGGCAGG
ACCCCGCCAAACCGTCCGGCTTCTGGGGAGACAAGAAGCACATCCTCATG
AGGACCGAGGAGGATCCTGGGTACAAGCCTGTCTGGGATGGGTTTGTTGA
CGTCACCAAAACCCTGCAGTACGAGGAAAAGATGCAGAAAGGGGCAGACC
AGGAGTCGAACGATGACGAGTTTAACCCGACCATCCAGGGCCCGTGGATG
CTTCGCTGGAAGATCGTGCATCACAACAGACACACCAAGGGGATAGAGGA
GGGGCATGACAAGATGTCTACATGGCACAAAGCGTAGATGGATATTCTCC
GTGGCGGCCATAAGAAGGGCATGACGGCTCCACACGTCTGCTGTGCCGGC
GGGACCTGGTACGTGGAGCTGGCGGAGGAGGACATGGAGAAAACACTCGG
CTGCGACCTGAAGAAAGACATAGTGACGTGTGAGGTGCCCTATGGTGGTG
TGCTCTTTCTCAACAATTGTATCCCACACCGCAGTCTGGAGAACTACTCA
GACGAGATCCGGTGGAGTCTTGACCTCCGATGGCAGGACCCCGCCAAACC
GTCCGGCTTCTGGGGAGACAAGAAGCACATCCTCATGAGGACCGAGGAGG
ATCCTGGGTACAAGCCTGTCTGGGATGGGTTTGTTGACGTCACCAAAACC
CTGCAGTACGAGGAAAAGATGCAGAAAGGGGCAGACCAGGAGTCGAACGA
TGACGAGTTTAACCCGACCATCCAGGGCCCGTGGATGCTTCGCTGGAAGA
TCGTGCATCACAACAGACACACCAAGGGGATAGAGGAGGGGCATGACAAG
ATGTCTACATGGCACAAAGCGTAGATGGATATTCTCCGTGGCGGCCATAA
GAAGGGCATGACGGCTCCACACGTCTGCTGTGCCGGCGGGACCTGGTACG
TGGAGCTGGCGGAGGAGGACATGGAGAAAACACTCGGCTGCGACCTGAAG
AAAGACATAGTGACGTGTGAGGTGCCCTATGGTGGTGTGCTCTTTCTCAA
CAATTGTATCCCACACCGCAGTCTGGAGAACTACTCAGACGAGATCCGGT
GGAGTCTTGACCTCCGATGGCAGGACCCCGCCAAACCGTCCGGCTTCTGG
GGAGACAAGAAGCACATCCTCATGAGGACCGAGGAGGATCCTGGGTACAA
GCCTGTCTGGGATGGGTTTGTTGACGTCACCAAAACCCTGCAGTACGAGG
AAAAGATGCAGAAAGGGGCAGACCAGGAGTCGAACGATGACGAGTTTAAC
CCGACCATCCAGGGCCCGTGGATGCTTCGCTGGAAGATCGTGCATCACAA
CAGACACACCAAGGGGATAGAGGAGGGGCATGACAAGATGTCTACATGGC
ACAAAGCGTAGATGGATATTCTCCGTGGCGGCCATAAGAAGGGCATGACG
GCTCCACACGTCTGCTGTGCCGGCGGGACCTGGTACGTGGAGCTGGCGGA
GGAGGACATGGAGAAAACACTCGGCTGCGACCTGAAGAAAGACATAGTGA
CGTGTGAGGTGCCCTATGGTGGTGTGCTCTTTCTCAACAATTGTATCCCA
CACCGCAGTCTGGAGAACTACTCAGACGAGATCCGGTGGAGTCTTGACCT
CCGATGGCAGGACCCCGCCAAACCGTCCGGCTTCTGGGGAGACAAGAAGC
ACATCCTCATGAGGACCGAGGAGGATCCTGGGTACAAGCCTGTCTGGGAT
GGGTTTGTTGACGTCACCAAAACCCTGCAGTACGAGGAAAAGATGCAGAA
AGGGGCAGACCAGGAGTCGAACGATGACGAGTTTAACCCGACCATCCAGG
GCCCGTGGATGCTTCGCTGGAAGATCGTGCATCACAACAGACACACCAAG
GGGATAGAGGAGGGGCATGACAAGATGTCTACATGGCACAAAGCGTAGAT
GGATATTCTCCGTGGCGGCCATAAGAAGGGCATGACGGCTCCACACGTCT
GCTGTGCCGGCGGGACCTGGTACGTGGAGCTGGCGGAGGAGGACATGGAG
AAAACACTCGGCTGCGACCTGAAGAAAGACATAGTGACGTGTGAGGTGCC
CTATGGTGGTGTGCTCTTTCTCAACAATTGTATCCCACACCGCAGTCTGG
AGAACTACTCAGACGAGATCCGGTGGAGTCTTGACCTCCGATGGCAGGAC
CCCGCCAAACCGTCCGGCTTCTGGGGAGACAAGAAGCACATCCTCATGAG
GACCGAGGAGGATCCTGGGTACAAGCCTGTCTGGGATGGGTTTGTTGACG
TCACCAAAACCCTGCAGTACGAGGAAAAGATGCAGAAAGGGGCAGACCAG
GAGTCGAACGATGACGAGTTTAACCCGACCATCCAGGGCCCGTGGATGCT
TCGCTGGAAGATCGTGCATCACAACAGACACACCAAGGGGATAGAGGAGG
GGCATGACAAGATGTCTACATGGCACAAAGCGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97172gene:BL97172Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97172_cuf3transcript:BL97172_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97172_cuf3-E1BL97172_cuf3-E1-1564476830-169986Branchiostoma lanceolatumexon
BL97172_cuf3-E2BL97172_cuf3-E2-1564476830-169988Branchiostoma lanceolatumexon
BL97172_cuf3-E3BL97172_cuf3-E3-1564476830-169990Branchiostoma lanceolatumexon
BL97172_cuf3-E4BL97172_cuf3-E4-1564476830-169992Branchiostoma lanceolatumexon
BL97172_cuf3-E5BL97172_cuf3-E5-1564476830-169995Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000028genomeSc0000028:1064249..1069903 +
Properties
Property NameValue
Transcript idBL97172_cuf3
Biotypeprotein_coding