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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97172_cuf3 >transcript:BL97172_cuf3-protein ID=transcript:BL97172_cuf3-protein|Name=transcript:BL97172_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=178bp
MDILRGGHKKGMTAPHVCCAGGTWYVELAEEDMEKTLGCDLKKDIVTCEV
PYGGVLFLNNCIPHRSLENYSDEIRWSLDLRWQDPAKPSGFWGDKKHILM
RTEEDPGYKPVWDGFVDVTKTLQYEEKMQKGADQESNDDEFNPTIQGPWM
LRWKIVHHNRHTKGIEEGHDKMSTWHKA Run BLAST on NCBI mRNA from alignment at Sc0000028:1064249..1069903+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97172_cuf3 ID=transcript:BL97172_cuf3|Name=transcript:BL97172_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=5655bp|location=Sequence derived from alignment at Sc0000028:1064249..1069903+ (Branchiostoma lanceolatum)
TTATGTAAGCACATACGGGAGAAGATGAAAGAGCTGGACTTTAACCACCC
AAGCAAAGGCTACAGCACAGTCTTAGCAGAAACTAGGCTACGAGTTAAAC
ACGCGAGCTGTGGAGAACTGAGCTGTGTGGATTCACAAGGAGTTGTAGAG
AATGATGCAGAGACAATGAACTTTGAAAGTGAAACACTAAAGACCTTTAA
AGAACTCTGAGAGTTATTTGTACAATACACAGAAACAGTTTTTTATAGAT
ATGATATGATAGATCTGATCGAATGTTTGTTTTTTAATGTCCCAATGGTC
ATCAGTAGACTAGACGTGTGGGGCATGGGATACCCCTGGCAGGTTCGTTC
ACCTGGCCTCTGAGAGATTGTAAATATGAGTACGGAATAACAACAATATA
AGAATATAATTATTTTATAAAACAGGATCGCTATGTACCACATGTTAAGT
GTCATGGCATCCTCTTTGTAAATACTTCAACTATGCATCGCTCTCCCAAG
GGAGGAATAAAGTACAAGAAAGAGAATGAATGAATGAACGAATGGTTTAA
TCAATAAATAAATAAATAAATAAACAAAGTCATGATCTACATGGGCTTCT
TAGATCCAGATATTTTGAATCAGATTCCAATGTTTTCTACAGAAATGTGC
ACCGTCTAACAATGTTTATTTCCAGACAACGCCTACCTGCAGCCCTCGTC
TCTCGGCACCCTCCAGCCCACCGCCTGGATCCCGCTGCTGAACGCCACTA
CCAAGAATGGATGTATGCAGGTCCGCACGTCCTACAAGGATGCAAATTGT
GCAAATTCGGACTTAATTTTCATAATTGAATAAAATAAATCATATACTTC
CGATCAAGGTATATAACTTTTGGCAGGTGGAACATAAACAGATGCAACAT
ATGCAAATTCGAGCATATTTTGCATACTTGATGCAAAATGCCTGAATTAA
ATACTTCTAAACATACAATACTGTATGTAAGTTTGGTAGAGAAGACCTTA
TTTCACAATATGTCTGCAAAAGATGAAAATATTTCATGGAGGTATGAGGC
ACCGGAACTCTTGTTAATAGCAGGATAAATACAGGATTTACTTCACCTGA
AAGCGTCTGGCCATTGAAAACTACCCCATATCTTCAGTGTCTTAAAAGTT
ACGGATTGTTTACCATGTGCCATCCACACCCCAAGCCCCTCCAACAACAA
AAAAACGCCCCTGCAGTTCCAGAGGAAGCTGCTAGAGGGCCCAAACCTAC
ACCACTTATTTATTACATCACAAGCTATCAGCCACCCAAAAATCAAGACC
ATATCACGTCCATGTTAAAAGTTACAAAAACGAAAGTTCTGCTGCAGTAC
CAAGGTCACATACCAGGGGGCCAAAATCTTCCTAGAATTTCAGCTTTACA
ACACCCGCCCACATACTAAATATCATCGTAATCCATCAAGAGGCTCTTGA
GTTATGCTGACTGGAGTGGTGCGGAAACACAAACAGACAAACAAACAGAC
ACACCCAAAACAATATCTCCATTTTTCATGGAGATAATAAGATGCAAACC
CTGTACATGTGCTCCAGATTCTCCGTGGCGGCCATAAGAAGGGCATGACG
GCTCCACACGTCTGCTGTGCCGGCGGGACCTGGTACGTGGAGCTGGCGGA
GGAGGACATGGAGAAAACACTCGGTAGATATCTTTCTATTTGCCCTTGGC
TAGCTTTCTATTCCGGTATTACCATCGCCTCCGTTTTACAAGGGCTGTAA
ATGCATTAAAGTTCGCGTAGTTTTTATTTCGCGCTAAGGCGAAAATGGAG
TGTTCGCGGTGATTTTAAGTTTGCGGGAGTGCTCTAGTCACATGCTGCTA
CAGTATTGGACAAAAATGTTCGCGGTGGTTTTAAGTTAAAACCGCGAATA
TAAAGCCACCGCGAACATTTCTGCATTTACAGTACCTGTCATGAACATAA
CAGAAATGAAATGAACGGGAAATAGCTGAAAATCTAATTGAATTGAACAG
ATAACTAATCAAGGGCATATTTGTTGCTCCCGCTGGTAGGCTGCGACCTG
AAGAAAGACATAGTGACGTGTGAGGTGCCCTATGGTGGTGTGCTCTTTCT
CAACAATTGTATCCCACACCGCAGGTAAGGGCTTTCAAGGTTTACATCTC
CCCAAGTAGGATGTGTGTGTTTGTGTGTGTGTGTGTGTGTTTGTGTGTGT
GTTTGTGTGTGTGTTTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTATGT
GTTTATGTGTGTGTGTTTATGTGTTTATGTGTGTGTTTATGTGTTTATGT
GCGTGTGCGTGAGTGTGTGTGTGTATGTGTTTGTGTGTGTGTGTGTGTGT
GTTTGCCTGTGTGTGTATCTTTAGATGGATATTGGTGTTTCTGCAGAGTA
CCTGTTGTTTATGTTTGCTCTGTCAGAGGGCGCTAATACTACTGAAATAG
CTAACCACTTATAAGGGGTTACAGTCTGGCTGCCTTTTTCCCGTCCAAGC
TTGGAAAGCTACTCACAGACAAGATTCGGTGGTCTTGACCTCCGCTTAAA
GGACCCGAACAAACCGTTAGGGGTCATCTTTGCGCAAAGATCCTTTCTAT
TCTATTCAGTCACTCGTTCATTCATTCACCCTTCGCCTAGGAGATTGTAT
TTTCGGGTGCGTGTGTCAGCTTGTGTGTCTGTCTGAGTGTGTGTCTGTAA
ACATGGTAACTCAAGAATACCTGGATGAATTATCTTGATATTTGATATGT
GGGTAGGTCTTGATAAGGTATCAAAATTATGTAATTCGGGGTTCCTTAGC
AGTGGAACTTCTGGTTTTGATATCTCGTTTATCCTCTTCGCAGTCTGGAG
AACTACTCAGACGAGATCCGGTGGAGTCTTGACCTCCGATGGCAGGACCC
CGCCAAACCGTCCGGCTTCTGGGGAGACAAGAAGCACATCCTCATGAGGA
CCGAGGAGGATCCTGGGTACAAGCCTGTCTGGGATGGGTTTGTTGACGTC
ACCAAAACCCTGCAGTACGAGGAAAAGATGGTAAGATGTGCATAGTTGGC
ATAGTATATCATGTGCAAAATGTTTATGTGATGGGCGAAGTGTGTAATTA
TGTCGCCATGTGTTTTAATAACACAGAAGAAGCTGCTAGAACCTAGATGT
ACGGTAATTGAAGGGCAAATTTGCAGTTTCCAACGAACGTCATAGGTCAA
TGACCCTGAGCACAGCCAATCCTAATGCGCTATTGGTTACATACAGGACT
GTCATTAAGAAAGCAGGGAGATATTGGTAAATATACATGCTGTTCATAAT
CTATTGCAACCTGATGCTGAATTGCGAGTAAGAAACATGGTTATGTTTTG
TGTCAATAACCTCCATTAACAATAATCCGCCGGGTTACTTAAATCCGCCA
CTTTGAAAAACAGTGAGTTTCAGAGATCTCTAGTGCAGCAAAGGTATGCA
CAGCTTAGACACACAGGAGTGCATTATACTGGGGGACGTTGGGTTGGAGA
TCTCTTTGGACGTATTATTTCAGGGTGCCGAAATTTTGTACCCTGGTGAA
ATATGTTAATAGATGTTACATATTTTTCTGATATATTTCACAGCAGAAAG
GGGCAGACCAGGAGTCGAACGATGACGAGTTTAACCCGACCATCCAGGGC
CCGTGGATGCTTCGCTGGAAGATCGTGCATCACAACAGACACACCAAGGG
GATAGAGGAGGGGCATGACAAGATGTCTACATGGCACAAAGCGTAGGGTA
CAAAACATAGTGTCTACAAGACAATATGAGGACTAGAAATAGTCATGCTT
TTAGGTACCGGAGTAATCAGCCAAGGATTGATGTGTTCAAAAATTCGTAT
TTTCCGAGAACCATAGTAGAATGGAACTCAAGTACTGTAGGAGCATCTTC
ACTAAGTAGCTTTAAAGAACGGTTACAGTCAGATATGCAAAGACTAGGTG
TAACAGGCCGTTCGGTGTAATATGACCAGCTGCTACCGCGCCGCGTGCCT
GCGAAGCTGGTGTGTTACGCCTAATGGCGGTTGTACCGGCTATATAGATA
CAGATGACAGTCAAACTAAACTGGCTATAGGGAGAATAATTTGCCAGGGG
AGTTTGGCCACCATAAGGGGAAATGTTAATCTTTCAGCGGACTGACTCTC
CTGGCTAATTATTCTCCTTTGGGCCGAATTCTACCCCCGTAGAAAGGCCT
AGTGGAGGCTATACAAAACATAATCAATCAAATCAATCAATCAAAGTTTA
TTGCACAACAACTGTAACGGGCACGACGTATGGCAAGTTCGTAAGTAGCA
CAAAATATCAAGACATATATGTCTTTGCTTATTAACAATACTAATTGATT
CTACAAAAACTACGGTATCCAATAAGAATTATATAGAATACATATATGGA
CGTATATTACATGATACACAGGAAACATCAATTGCGTCAGAGATTAATCG
CACACACGAGAAACTAGGGGGACCGACTCAAACATATAATAGAAGTCCAC
ACATAGCTAATCTTCTCCTTGATCAGTCAAGATGTAGCCACATACCAAAA
GTCTTAAAAATCTACCACTAGCTTCTTGAATTATGCTGTTAAACTACNCT
AGCTTCTTGAATTATGCTGTTTAACTACTAAAAAACGGAAACACAAGCTG
CACAAAAATACATTCTCACAACGCATCATCATTATCATCATACGATTCAA
ACATGGTGTTGCCAATGATAATGTTGAATGGTTTCTGTTTGTACACTGGC
TGTGCATTTGCTATGCTTTGATTCAAAGGGACATACCAAGAGGTCTATCT
GGTACAAGGCATAGAATAACAAACACACCAAGCCAAAAATGTAACAAGAG
GGCACACAAACGTAATCAGCTCCTCGATCATTTTGGATCAATGTTGATCG
TTGATCTGTAATTTCCAACGCCAAAAAAATTGGACAACCAAATCTTCGAC
TTTGGTCTAAAGTTTGTTGATGAATAAGCAAAGCTTAGTCACATGCCAAA
TATCGTAACAGCTTCTTGAGTTATTTAATATCAAACATAAAATCACAAGA
TGGCAATCACTTGCTACCGAAACATAACCTACATGATGATGGTAATGATA
CAGCTCAGACGGGAATATTCTTACCCCATGACCTCAATAAAAAGCGGCCT
ACAAGCCGATTTGAGCTTCTTATGAATGAGCACTATGGCTCAAAATAATG
ATGGCGAATGCTGTTATGTTACAGTATGTAACCCTGCTGTCATTTCATAG
ATAATGACAACCATTTTCCTTGTCACATTCTGTGATCTTTTGAGTACTAT
AACATTTACAGGTTCTTCGCTACGAAATGACTGCAATTTTAGAAGGTTGT
GTAAGCTCGAATATTGTTATCCGTGACCAGATACGTGTTTTTATAGGAAT
AAGGAAATATTGGGAGTCATTGTACCCTGTGATCTAGTGTCACTGCTCGA
GACCAATAATTGGGAATACGTGCACAGTGCACCTTATGTAAATATGTAGG
TGCACAGAAAATGTGTGGGGCACAAAAAGAAATAAAGTTAAAGCAAAACG
TAAATACAAATATCACTGCCTCTCTTCAAAACTTGAATGTGAAATAGCTA
GCTTCAAATTTTCATCAAGTAATACATGCTCAACAAATGTTTCATCATTT
TTCCT Coding sequence (CDS) from alignment at Sc0000028:1064249..1069903+ >transcript:BL97172_cuf3 ID=transcript:BL97172_cuf3|Name=transcript:BL97172_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2685bp|location=Sequence derived from alignment at Sc0000028:1064249..1069903+ (Branchiostoma lanceolatum)
ATGGATATTCTCCGTGGCGGCCATAAGAAGGGCATGACGGCTCCACACGT
CTGCTGTGCCGGCGGGACCTGGTACGTGGAGCTGGCGGAGGAGGACATGG
AGAAAACACTCGGCTGCGACCTGAAGAAAGACATAGTGACGTGTGAGGTG
CCCTATGGTGGTGTGCTCTTTCTCAACAATTGTATCCCACACCGCAGTCT
GGAGAACTACTCAGACGAGATCCGGTGGAGTCTTGACCTCCGATGGCAGG
ACCCCGCCAAACCGTCCGGCTTCTGGGGAGACAAGAAGCACATCCTCATG
AGGACCGAGGAGGATCCTGGGTACAAGCCTGTCTGGGATGGGTTTGTTGA
CGTCACCAAAACCCTGCAGTACGAGGAAAAGATGCAGAAAGGGGCAGACC
AGGAGTCGAACGATGACGAGTTTAACCCGACCATCCAGGGCCCGTGGATG
CTTCGCTGGAAGATCGTGCATCACAACAGACACACCAAGGGGATAGAGGA
GGGGCATGACAAGATGTCTACATGGCACAAAGCGTAGATGGATATTCTCC
GTGGCGGCCATAAGAAGGGCATGACGGCTCCACACGTCTGCTGTGCCGGC
GGGACCTGGTACGTGGAGCTGGCGGAGGAGGACATGGAGAAAACACTCGG
CTGCGACCTGAAGAAAGACATAGTGACGTGTGAGGTGCCCTATGGTGGTG
TGCTCTTTCTCAACAATTGTATCCCACACCGCAGTCTGGAGAACTACTCA
GACGAGATCCGGTGGAGTCTTGACCTCCGATGGCAGGACCCCGCCAAACC
GTCCGGCTTCTGGGGAGACAAGAAGCACATCCTCATGAGGACCGAGGAGG
ATCCTGGGTACAAGCCTGTCTGGGATGGGTTTGTTGACGTCACCAAAACC
CTGCAGTACGAGGAAAAGATGCAGAAAGGGGCAGACCAGGAGTCGAACGA
TGACGAGTTTAACCCGACCATCCAGGGCCCGTGGATGCTTCGCTGGAAGA
TCGTGCATCACAACAGACACACCAAGGGGATAGAGGAGGGGCATGACAAG
ATGTCTACATGGCACAAAGCGTAGATGGATATTCTCCGTGGCGGCCATAA
GAAGGGCATGACGGCTCCACACGTCTGCTGTGCCGGCGGGACCTGGTACG
TGGAGCTGGCGGAGGAGGACATGGAGAAAACACTCGGCTGCGACCTGAAG
AAAGACATAGTGACGTGTGAGGTGCCCTATGGTGGTGTGCTCTTTCTCAA
CAATTGTATCCCACACCGCAGTCTGGAGAACTACTCAGACGAGATCCGGT
GGAGTCTTGACCTCCGATGGCAGGACCCCGCCAAACCGTCCGGCTTCTGG
GGAGACAAGAAGCACATCCTCATGAGGACCGAGGAGGATCCTGGGTACAA
GCCTGTCTGGGATGGGTTTGTTGACGTCACCAAAACCCTGCAGTACGAGG
AAAAGATGCAGAAAGGGGCAGACCAGGAGTCGAACGATGACGAGTTTAAC
CCGACCATCCAGGGCCCGTGGATGCTTCGCTGGAAGATCGTGCATCACAA
CAGACACACCAAGGGGATAGAGGAGGGGCATGACAAGATGTCTACATGGC
ACAAAGCGTAGATGGATATTCTCCGTGGCGGCCATAAGAAGGGCATGACG
GCTCCACACGTCTGCTGTGCCGGCGGGACCTGGTACGTGGAGCTGGCGGA
GGAGGACATGGAGAAAACACTCGGCTGCGACCTGAAGAAAGACATAGTGA
CGTGTGAGGTGCCCTATGGTGGTGTGCTCTTTCTCAACAATTGTATCCCA
CACCGCAGTCTGGAGAACTACTCAGACGAGATCCGGTGGAGTCTTGACCT
CCGATGGCAGGACCCCGCCAAACCGTCCGGCTTCTGGGGAGACAAGAAGC
ACATCCTCATGAGGACCGAGGAGGATCCTGGGTACAAGCCTGTCTGGGAT
GGGTTTGTTGACGTCACCAAAACCCTGCAGTACGAGGAAAAGATGCAGAA
AGGGGCAGACCAGGAGTCGAACGATGACGAGTTTAACCCGACCATCCAGG
GCCCGTGGATGCTTCGCTGGAAGATCGTGCATCACAACAGACACACCAAG
GGGATAGAGGAGGGGCATGACAAGATGTCTACATGGCACAAAGCGTAGAT
GGATATTCTCCGTGGCGGCCATAAGAAGGGCATGACGGCTCCACACGTCT
GCTGTGCCGGCGGGACCTGGTACGTGGAGCTGGCGGAGGAGGACATGGAG
AAAACACTCGGCTGCGACCTGAAGAAAGACATAGTGACGTGTGAGGTGCC
CTATGGTGGTGTGCTCTTTCTCAACAATTGTATCCCACACCGCAGTCTGG
AGAACTACTCAGACGAGATCCGGTGGAGTCTTGACCTCCGATGGCAGGAC
CCCGCCAAACCGTCCGGCTTCTGGGGAGACAAGAAGCACATCCTCATGAG
GACCGAGGAGGATCCTGGGTACAAGCCTGTCTGGGATGGGTTTGTTGACG
TCACCAAAACCCTGCAGTACGAGGAAAAGATGCAGAAAGGGGCAGACCAG
GAGTCGAACGATGACGAGTTTAACCCGACCATCCAGGGCCCGTGGATGCT
TCGCTGGAAGATCGTGCATCACAACAGACACACCAAGGGGATAGAGGAGG
GGCATGACAAGATGTCTACATGGCACAAAGCGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000028 | genome | Sc0000028:1064249..1069903 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97172_cuf3 |
| Biotype | protein_coding |
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