transcript:BL97170_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97170_cuf2
Unique Nametranscript:BL97170_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97170_cuf2

>transcript:BL97170_cuf2-protein ID=transcript:BL97170_cuf2-protein|Name=transcript:BL97170_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=159bp
GESPLHLAIFNGNFRLVRELVGRGADPNARCTGTNFSQAHGREGDVLFYY
GEFALSLAARLGMEHIVRYLVENGADLDNQDSKGNTVLHVLATMAHPDAA
CSMARLVLKLVEEQLETLKAQYDNQQLSQEELVQIRENLDLEKITNNAGF
TPVKLAADS
Run BLAST on NCBI

mRNA from alignment at Sc0000028:1599009..1600444+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97170_cuf2 ID=transcript:BL97170_cuf2|Name=transcript:BL97170_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=1436bp|location=Sequence derived from alignment at Sc0000028:1599009..1600444+ (Branchiostoma lanceolatum)
GGAGAGTCCCCGCTGCATCTGGCCATTTTCAACGGAAACTTCCGGCTGGT CCGAGAGCTTGTGGGCCGTGGAGCGGACCCGAACGCGCGGTGTACCGGCA CGAACTTCTCACAGGCTCACGGGAGGGAGGGGGACGTGCTGTTCTACTAC GGTAAGGGACCCCTTTCTACTTATGCGCAACTTCATGTAACTTGTTGTCC AGCAAACAGCTAGACAATGATAAGTGAAGCGAAGACTTTATCTCACCAAG TACTGTATAAGTACTGCCATCAAATAGCTTGAAACACCACTCTCAGTCAG ATATGCAATCGTTCTGTACGATATAACCAACTGCACCGCGCCGCGTGCTT GCGAAGCTGGTGTGTTACACAGATGGGCGGTTTTATCGGCTATAGATTCA GATACAGATACAGTTTTTGTAACTTGATTTTGTTTTATGTATTTGTTACA AAGCACATTTGGGAAGCCGGAAAATGAGATGCAGCAAGAACAAGGCACCA TCTTATTTCAAATCTTACATTGCAGGAGAGTTTGCTCTTTCTCTCGCTGC CCGTCTCGGGATGGAGCACATTGTCCGGTACCTGGTGGAAAATGGCGCTG ACTTGGACAACCAGGACTCAAAAGGTAAAATTGAAGAAACTCTGCCATCG TCCTAGAGCCATTGAGCAAATAAATAAAAAAATATTTATGCTCTTTGCTT GTTTATCTTGTACAAGAATAGTCATAACATGTCCAGATATTTTCACACTT CCAAGCACATCTCTAATATTACGCCAACTCTCACGTCTATTTGGTCATAT TCTATACATATATGCATAGCACATGTATTTATCGATAGAACAGTTCCTAC ATAGAAACAAGCGAAACGAGAACACAAATTGATAGGAAAAAATCTCTGAG ATGGGAGTGTTTTCGCCCCTATGATGTAGGCAACACCGTTCTGCACGTGC TGGCCACCATGGCCCACCCTGACGCGGCCTGCTCCATGGCCCGCCTGGTG CTGAAGCTGGTGGAGGAGCAGCTGGAGACACTCAAGGCGCAGTACGACAA CCAGCAACTCAGCCAGGTACTAGCAGGTCTAGTGCGCGATTTTTCAGCAT TCTAATAGAATCTCTCGGATTTCTCATATCTTTTAATTGTTCAGTTATTT TGGGGTCTGTGATCATCAAAATCCCATAAATCAACTTAAACAAGTTTTGT AGACATCTTTTTTTGTCTTATACTTGCGCTTGTAGTCTTGGGGGTAATTT TACAGGTTACTTCTATTGTTCTGTATCTTTCCTATAAAGCAAGTGTTAAA ATTGTTGATGTAAGTACGAGAAACTCATGCATTTGCTTGTTAAGGAGGAG CTTGTCCAGATAAGGGAGAATTTGGATCTGGAGAAGATCACCAACAACGC GGGGTTCACTCCGGTCAAGCTGGCAGCGGATAGCGG

Coding sequence (CDS) from alignment at Sc0000028:1599009..1600444+

>transcript:BL97170_cuf2 ID=transcript:BL97170_cuf2|Name=transcript:BL97170_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1908bp|location=Sequence derived from alignment at Sc0000028:1599009..1600444+ (Branchiostoma lanceolatum)
GGAGAGTCCCCGCTGCATCTGGCCATTTTCAACGGAAACTTCCGGCTGGT
CCGAGAGCTTGTGGGCCGTGGAGCGGACCCGAACGCGCGGTGTACCGGCA
CGAACTTCTCACAGGCTCACGGGAGGGAGGGGGACGTGCTGTTCTACTAC
GGAGAGTTTGCTCTTTCTCTCGCTGCCCGTCTCGGGATGGAGCACATTGT
CCGGTACCTGGTGGAAAATGGCGCTGACTTGGACAACCAGGACTCAAAAG
GCAACACCGTTCTGCACGTGCTGGCCACCATGGCCCACCCTGACGCGGCC
TGCTCCATGGCCCGCCTGGTGCTGAAGCTGGTGGAGGAGCAGCTGGAGAC
ACTCAAGGCGCAGTACGACAACCAGCAACTCAGCCAGGAGGAGCTTGTCC
AGATAAGGGAGAATTTGGATCTGGAGAAGATCACCAACAACGCGGGGTTC
ACTCCGGTCAAGCTGGCAGCGGATAGCGGAGAGTCCCCGCTGCATCTGGC
CATTTTCAACGGAAACTTCCGGCTGGTCCGAGAGCTTGTGGGCCGTGGAG
CGGACCCGAACGCGCGGTGTACCGGCACGAACTTCTCACAGGCTCACGGG
AGGGAGGGGGACGTGCTGTTCTACTACGGAGAGTTTGCTCTTTCTCTCGC
TGCCCGTCTCGGGATGGAGCACATTGTCCGGTACCTGGTGGAAAATGGCG
CTGACTTGGACAACCAGGACTCAAAAGGCAACACCGTTCTGCACGTGCTG
GCCACCATGGCCCACCCTGACGCGGCCTGCTCCATGGCCCGCCTGGTGCT
GAAGCTGGTGGAGGAGCAGCTGGAGACACTCAAGGCGCAGTACGACAACC
AGCAACTCAGCCAGGAGGAGCTTGTCCAGATAAGGGAGAATTTGGATCTG
GAGAAGATCACCAACAACGCGGGGTTCACTCCGGTCAAGCTGGCAGCGGA
TAGCGGAGAGTCCCCGCTGCATCTGGCCATTTTCAACGGAAACTTCCGGC
TGGTCCGAGAGCTTGTGGGCCGTGGAGCGGACCCGAACGCGCGGTGTACC
GGCACGAACTTCTCACAGGCTCACGGGAGGGAGGGGGACGTGCTGTTCTA
CTACGGAGAGTTTGCTCTTTCTCTCGCTGCCCGTCTCGGGATGGAGCACA
TTGTCCGGTACCTGGTGGAAAATGGCGCTGACTTGGACAACCAGGACTCA
AAAGGCAACACCGTTCTGCACGTGCTGGCCACCATGGCCCACCCTGACGC
GGCCTGCTCCATGGCCCGCCTGGTGCTGAAGCTGGTGGAGGAGCAGCTGG
AGACACTCAAGGCGCAGTACGACAACCAGCAACTCAGCCAGGAGGAGCTT
GTCCAGATAAGGGAGAATTTGGATCTGGAGAAGATCACCAACAACGCGGG
GTTCACTCCGGTCAAGCTGGCAGCGGATAGCGGAGAGTCCCCGCTGCATC
TGGCCATTTTCAACGGAAACTTCCGGCTGGTCCGAGAGCTTGTGGGCCGT
GGAGCGGACCCGAACGCGCGGTGTACCGGCACGAACTTCTCACAGGCTCA
CGGGAGGGAGGGGGACGTGCTGTTCTACTACGGAGAGTTTGCTCTTTCTC
TCGCTGCCCGTCTCGGGATGGAGCACATTGTCCGGTACCTGGTGGAAAAT
GGCGCTGACTTGGACAACCAGGACTCAAAAGGCAACACCGTTCTGCACGT
GCTGGCCACCATGGCCCACCCTGACGCGGCCTGCTCCATGGCCCGCCTGG
TGCTGAAGCTGGTGGAGGAGCAGCTGGAGACACTCAAGGCGCAGTACGAC
AACCAGCAACTCAGCCAGGAGGAGCTTGTCCAGATAAGGGAGAATTTGGA
TCTGGAGAAGATCACCAACAACGCGGGGTTCACTCCGGTCAAGCTGGCAG
CGGATAGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97170gene:BL97170Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97170_cuf2transcript:BL97170_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97170_cuf2-E1BL97170_cuf2-E1-1564476830-170530Branchiostoma lanceolatumexon
BL97170_cuf2-E2BL97170_cuf2-E2-1564476830-170532Branchiostoma lanceolatumexon
BL97170_cuf2-E3BL97170_cuf2-E3-1564476830-170534Branchiostoma lanceolatumexon
BL97170_cuf2-E4BL97170_cuf2-E4-1564476830-170537Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000028genomeSc0000028:1599009..1600444 +
Properties
Property NameValue
Transcript idBL97170_cuf2
Biotypeprotein_coding