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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97168_cuf2 >transcript:BL97168_cuf2-protein ID=transcript:BL97168_cuf2-protein|Name=transcript:BL97168_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=318bp
ICWSAGSEHIIDYGCAHKTVSGCDHGECSNGTRPDDPKFLTCNGTVAPVS
SGEWSGEVTLSTDNNLACLTIRLERDPSYHFATTLSPCVILVVLMVITFM
LPVDKGDRISFGVTVLLSMVVSLVVVTGFLPVKGIIPFIALLIIVAMGMM
ALFMLVTLFIVILHNKKGTLSPCARRFFLCYMARVLLMGDLSKMATKGET
SLNQGRRSSRSLRRKSLANDSPTRLEENAATAIAFGPPRAQLQIAMKNEH
RLVELQNSMDELNVNVGRLLSQSNGNDEELPTDYMLLADVLDRLCLLLYI
VSIIGAVPCTLYLSPRKR Run BLAST on NCBI mRNA from alignment at Sc0000652:30892..35170+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97168_cuf2 ID=transcript:BL97168_cuf2|Name=transcript:BL97168_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4279bp|location=Sequence derived from alignment at Sc0000652:30892..35170+ (Branchiostoma lanceolatum)
ATTTGCTGGAGCGCCGGATCCGAACACATCATAGGTAGGGTTATTAGAAT
TCGTATGAAAATGATTTGCTTAAATGAAAGAATTGAAGTTTGGGCCAATG
GATTTACAAAAGACAGTTAACGTCTGTAACGTCTACTCTCGAGTGTCTCA
TAAATCCATATAGTACCCTAAGACTGCTGCGTTAAAAATGTTAATCTAAA
GAGATTTATTAATACAGCATCAGAAATCCCCAATGTGTGCAAAATGCAGA
TATCTTGGTGTTTAAAACATTCTTGGGAAGGCCTCGGTGACACATTTTCA
AATGTGGTGATCTTAGGACACCACGCTGAATTATGAGAGTTGTTATATCG
GAATAGGATCATGTAGAGGCAGCTATATCGGAGTTTTGATAGTACGTTGT
GTGCCTCTTCTCAAAAAGACCACGCTGGCAATTATCCGCATTTTAGAAAG
ATAGAACCTGTTGTTATAGTTAAAGATCATGTTTCTGTCTACGTTGATGA
AGGTTAGACATCCAGTTAATACGACACACAAGATAAAAGATGCTCAAGCA
ACGAATCTATCCAGTTGCATGTGTAAACGTTATCTTGTGCATGTTATCGT
CTGTTAGATTATGGTTGCGCTCACAAAACTGTCTCTGGTTGTGACCATGG
AGAATGCTCCAACGGGACGAGGCCAGACGACCCGAAGTTCTTGACGTGTA
ACGGCACCGTCGCACCGGTGTCCAGCGGGGAGTGGAGCGGAGAAGTCACC
CTCTCCACCGACAACAACCTGGCATGTCTCACCATCCGCCTCGAGCGGGA
TCCCAGTTACCACTTCGCCACGACCCTCTCTCCCTGCGTCATCCTGGTGG
TCCTGATGGTCATCACCTTCATGTTACCTGTAGACAAGGGAGACCGCATC
TCGTTCGGTGTCACCGTGCTGCTTTCCATGGTGGTGTCGCTTGTGGTCGT
CACAGGTTTTCTGCCTGTCAAGGGGATCATTCCTTTCATCGGTAAGTTGA
TCAACCCCCATCTTACAAGAAAGTGAAAACTAGAGTTAGGGATTTGTGCT
ACATATACTTCAGGTTTGCTATGTAAGTTTAGTGATTACGGGGTCTGTTT
TATAAGTATGAATTGGTATTGATTTTTATTTGAGTTGAATGTGTGATAGT
TGTGTGCCGATTCGTTACAAATAGAGAGAACGCTAGCACCCCAAAAAAAA
ACCTCCCAATAAAATAGTATGGCGACCCTGTGACGTCACTATTCAAGATG
TCGGCCACCACACATGCCAACGGATCCAACAGGCATGGTACCTTTTGTTT
GAAGAACGGCTGTTGCATTTCTTGTGAGTAGACCAGAAAAGTCCCAGACT
ATCACAATCAACAAGGGATATAGGATCTTTTTAAATGAAAATCTAATACC
ATCATAACTCTTAAACGGCCAATATTTTTGCACCATGGATATTGTATTGT
CATTGAGTTATTACACTGGAAATAATTTTCGACCCCAAAGCCATATGTAT
AATTCTTATTCTGCAAGCTATTAGTTAATTGATTTAAAGCATTTAAGCTA
TTAAGTTATGTCTGAAGACGTGCTTACAAACTGTGTACTGAAGAAAGAAA
CGCTATAGGTTCAAATATGATAATGTGCCGATTGACGAGAGTGTAACCCA
CCGTTAATTTTCACAGCTCTGCTGATCATCGTGGCCATGGGGATGATGGC
TCTCTTCATGCTGGTCACCCTCTTCATCGTCATCCTTCACAATAAGAAGG
GGACACTGTCGCCGTGTGCTAGGAGGTTCTTCTTGTGCTACATGGCAAGG
TACGAAGAAGTTTATCTGTTAAAATCTCCCTTGTACGTTTCACGCGTACG
GGTCATTCTACCAGTAATATTGTGCAGACCCAGCCTGATATTCATTCTAT
TCTATCCCCGGTCCCGGCTAGGTCTTGTTTGATCGCTTCCCGCAACAATC
ATGCATTGCAGAAATGTCGTTTCATGTTTGCGGTTTTCGCTTTAAGGTCT
TCGCCGCGAACGTGAAACCACCGCGATGATGTTTTAATTATGCAAATATA
GATTATACAAGACCAAGTACAAGCGTACTGATAAACTGAAGAAAGTACAA
TGTTTACTTCCCATTTCTACTACAACTGTAATTTGTTAAGAGAGTGTGAA
ATATAGAAAGTCTGTAAGAAAACTTGCCTGATTACTTGGATTATATTTCT
AATTTTCATCAGTCAGATGTCAGATGAAAAATTTCATATCCCTTGCCGGG
TAACTGGAATAAATACATTTTTTCCTAGGCCCTAGCATATTGTGTCTTAC
CGCTCCATTACGCGCCAGGGTATAGTTTCTTAAAGCCGTTCTTTCGACGG
CGCCTTGAAATGCAGTGAATGAATGAATGAATAGGGAGAAGCGTTTTAGT
GTTAACATCTTAATAGAGGTATAGGTAGTTCCTTAACGGGAAAGGATTAT
ATCAACGTTTATGCTGTGGTTTACTCTTGCAAATAACTGTACATTGTAAG
AGTTTAACTTTTCCGGCAATTCAGTTCCGCATTTTGAGGACATCATAAGA
CCGTGATGAAGTTATCACTTTTAACATACAATTTCTTAATTCATACACCA
GAGTACTATTAATGGGAGACCTTAGCAAGATGGCCACCAAAGGAGAGACA
TCTCTCAACCAAGGGCGAAGGTCTTCTCGGTCCCTTAGAAGGAAGAGCCT
TGCTAATGACAGCCCTACAAGGCTAGAGGAGAATGCTGCCACTGCCATTG
CTTTCGGACCCCCTAGGGCACAATTACAAATAGCGATGAAAAACGAACAT
CGCCTTGTTGAGTTACAAAATAGTATGGACGAACTCAATGTCAATGTCGG
TAGACTCCTGTCGCAATCTAACGGTAACGACGAGGAGCTTCCGACCGATT
ACATGCTGTTGGCTGATGTGTTGGATAGGCTGTGTCTGTTGTTATATATC
GTCAGCATAATTGGGGCGGTCCCTTGTACTTTGTACTTGAGTCCTCGTAA
GCGCTAAGGCCACCCAAACGCACCGCCTTCAATCTGTTTCCATCCAAGTT
GTTTGATTAATTGCTTTTTGTTTGTTTGTTTGTTTGTTGTTGTTATTTGC
CTTTAATGTCATTGTGTACTCTGTAAATGATATATGCTGTGTCTAATGTG
GTGCATCAAAAATCAGCAAATGGTGTCTTGATTATTTGCCTCTTTAATGT
TTTGTGTGGTATTTATTAATTGTTTAAGATAAATTACTTTATGCAGTGTA
GTAATAGTGCAGGCTGAAAAAAAGAAACAAATAAATAGATTTTTGGTTGT
TGAAAACGATAGCAAAGATTATTCATCAAGAAATATGCACTCATATTCCT
GAAGTACCTACGGTATGAGAGATTACTGAATATGACGATGTAAATCATCT
AGTTTACATGATGTATGTAGCCTCTTTGTACAAAATGGTAAAATATTTAC
ACTTCCCATTGTCGTATCAGCACAAATAGATATAGCTACCTTTCTCTCCC
TTAAAATAATTCCTCTGGTTAGTCATCCACTTATTCATTCATTAATTCAC
TCAAAAACATTCTTTCTTTCTTGTACTTTATTCCTCCCTTGGGAGAGCAT
TGCATAGCTGAAGTATTTACAAAGGGGATGCCATGACACTTAACATGTGG
TACATAGCGATCCTGTTTTATAGAATGAATTATATTCTCATATTGCTGTC
ATTTCGTACTCATATTTACAATCTCTCGGAGGGCAGGTGAACGAGCCTGT
CAGGGGTATCCCATGTCCCACACGTATAGTCTACTGATGACCATTGTGAC
ATCAGTAGACATTCATTCATTCTTTTATTCATTCATTCATTCATTCATTC
GTTCATTGATTTAATCAATTGCATCTATGATGTATCTAAAACCATGAAGG
TTTTGCATGTAACTATTAGTATTTCATTGTACAGTGTTGCCTATGTGTTG
ATTCACAATACTCTTATTTAAAAGGGATGTAATGCGTGTAATGAATGTTG
TATTATGAGGTCGTGTTCACAGTATTGCTTTTAAATGCACTGCCTACCGA
TTTGGTCCTGATGTTAGACTTGAAGTGAAAATTGTTTTTTTATAAGGCTG
CATTGGCTTTATATATTAGACTAATTGTACACTGGTTCGCTACCCAATAA
CAAACTTCGTACAGTTAATGGGAAAATGTATGTATGACAGTGACATATGA
TTTATGTGCGTCAAAAGTTCTGGAGGCATTGTCTTATATGCTCCTGCGTT
ACAAAATGTGATTGACTATGTACAGATGA Coding sequence (CDS) from alignment at Sc0000652:30892..35170+ >transcript:BL97168_cuf2 ID=transcript:BL97168_cuf2|Name=transcript:BL97168_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=3828bp|location=Sequence derived from alignment at Sc0000652:30892..35170+ (Branchiostoma lanceolatum)
ATTTGCTGGAGCGCCGGATCCGAACACATCATAGATTATGGTTGCGCTCA
CAAAACTGTCTCTGGTTGTGACCATGGAGAATGCTCCAACGGGACGAGGC
CAGACGACCCGAAGTTCTTGACGTGTAACGGCACCGTCGCACCGGTGTCC
AGCGGGGAGTGGAGCGGAGAAGTCACCCTCTCCACCGACAACAACCTGGC
ATGTCTCACCATCCGCCTCGAGCGGGATCCCAGTTACCACTTCGCCACGA
CCCTCTCTCCCTGCGTCATCCTGGTGGTCCTGATGGTCATCACCTTCATG
TTACCTGTAGACAAGGGAGACCGCATCTCGTTCGGTGTCACCGTGCTGCT
TTCCATGGTGGTGTCGCTTGTGGTCGTCACAGGTTTTCTGCCTGTCAAGG
GGATCATTCCTTTCATCGCTCTGCTGATCATCGTGGCCATGGGGATGATG
GCTCTCTTCATGCTGGTCACCCTCTTCATCGTCATCCTTCACAATAAGAA
GGGGACACTGTCGCCGTGTGCTAGGAGGTTCTTCTTGTGCTACATGGCAA
GAGTACTATTAATGGGAGACCTTAGCAAGATGGCCACCAAAGGAGAGACA
TCTCTCAACCAAGGGCGAAGGTCTTCTCGGTCCCTTAGAAGGAAGAGCCT
TGCTAATGACAGCCCTACAAGGCTAGAGGAGAATGCTGCCACTGCCATTG
CTTTCGGACCCCCTAGGGCACAATTACAAATAGCGATGAAAAACGAACAT
CGCCTTGTTGAGTTACAAAATAGTATGGACGAACTCAATGTCAATGTCGG
TAGACTCCTGTCGCAATCTAACGGTAACGACGAGGAGCTTCCGACCGATT
ACATGCTGTTGGCTGATGTGTTGGATAGGCTGTGTCTGTTGTTATATATC
GTCAGCATAATTGGGGCGGTCCCTTGTACTTTGTACTTGAGTCCTCGTAA
GCGCTAAATTTGCTGGAGCGCCGGATCCGAACACATCATAGATTATGGTT
GCGCTCACAAAACTGTCTCTGGTTGTGACCATGGAGAATGCTCCAACGGG
ACGAGGCCAGACGACCCGAAGTTCTTGACGTGTAACGGCACCGTCGCACC
GGTGTCCAGCGGGGAGTGGAGCGGAGAAGTCACCCTCTCCACCGACAACA
ACCTGGCATGTCTCACCATCCGCCTCGAGCGGGATCCCAGTTACCACTTC
GCCACGACCCTCTCTCCCTGCGTCATCCTGGTGGTCCTGATGGTCATCAC
CTTCATGTTACCTGTAGACAAGGGAGACCGCATCTCGTTCGGTGTCACCG
TGCTGCTTTCCATGGTGGTGTCGCTTGTGGTCGTCACAGGTTTTCTGCCT
GTCAAGGGGATCATTCCTTTCATCGCTCTGCTGATCATCGTGGCCATGGG
GATGATGGCTCTCTTCATGCTGGTCACCCTCTTCATCGTCATCCTTCACA
ATAAGAAGGGGACACTGTCGCCGTGTGCTAGGAGGTTCTTCTTGTGCTAC
ATGGCAAGAGTACTATTAATGGGAGACCTTAGCAAGATGGCCACCAAAGG
AGAGACATCTCTCAACCAAGGGCGAAGGTCTTCTCGGTCCCTTAGAAGGA
AGAGCCTTGCTAATGACAGCCCTACAAGGCTAGAGGAGAATGCTGCCACT
GCCATTGCTTTCGGACCCCCTAGGGCACAATTACAAATAGCGATGAAAAA
CGAACATCGCCTTGTTGAGTTACAAAATAGTATGGACGAACTCAATGTCA
ATGTCGGTAGACTCCTGTCGCAATCTAACGGTAACGACGAGGAGCTTCCG
ACCGATTACATGCTGTTGGCTGATGTGTTGGATAGGCTGTGTCTGTTGTT
ATATATCGTCAGCATAATTGGGGCGGTCCCTTGTACTTTGTACTTGAGTC
CTCGTAAGCGCTAAATTTGCTGGAGCGCCGGATCCGAACACATCATAGAT
TATGGTTGCGCTCACAAAACTGTCTCTGGTTGTGACCATGGAGAATGCTC
CAACGGGACGAGGCCAGACGACCCGAAGTTCTTGACGTGTAACGGCACCG
TCGCACCGGTGTCCAGCGGGGAGTGGAGCGGAGAAGTCACCCTCTCCACC
GACAACAACCTGGCATGTCTCACCATCCGCCTCGAGCGGGATCCCAGTTA
CCACTTCGCCACGACCCTCTCTCCCTGCGTCATCCTGGTGGTCCTGATGG
TCATCACCTTCATGTTACCTGTAGACAAGGGAGACCGCATCTCGTTCGGT
GTCACCGTGCTGCTTTCCATGGTGGTGTCGCTTGTGGTCGTCACAGGTTT
TCTGCCTGTCAAGGGGATCATTCCTTTCATCGCTCTGCTGATCATCGTGG
CCATGGGGATGATGGCTCTCTTCATGCTGGTCACCCTCTTCATCGTCATC
CTTCACAATAAGAAGGGGACACTGTCGCCGTGTGCTAGGAGGTTCTTCTT
GTGCTACATGGCAAGAGTACTATTAATGGGAGACCTTAGCAAGATGGCCA
CCAAAGGAGAGACATCTCTCAACCAAGGGCGAAGGTCTTCTCGGTCCCTT
AGAAGGAAGAGCCTTGCTAATGACAGCCCTACAAGGCTAGAGGAGAATGC
TGCCACTGCCATTGCTTTCGGACCCCCTAGGGCACAATTACAAATAGCGA
TGAAAAACGAACATCGCCTTGTTGAGTTACAAAATAGTATGGACGAACTC
AATGTCAATGTCGGTAGACTCCTGTCGCAATCTAACGGTAACGACGAGGA
GCTTCCGACCGATTACATGCTGTTGGCTGATGTGTTGGATAGGCTGTGTC
TGTTGTTATATATCGTCAGCATAATTGGGGCGGTCCCTTGTACTTTGTAC
TTGAGTCCTCGTAAGCGCTAAATTTGCTGGAGCGCCGGATCCGAACACAT
CATAGATTATGGTTGCGCTCACAAAACTGTCTCTGGTTGTGACCATGGAG
AATGCTCCAACGGGACGAGGCCAGACGACCCGAAGTTCTTGACGTGTAAC
GGCACCGTCGCACCGGTGTCCAGCGGGGAGTGGAGCGGAGAAGTCACCCT
CTCCACCGACAACAACCTGGCATGTCTCACCATCCGCCTCGAGCGGGATC
CCAGTTACCACTTCGCCACGACCCTCTCTCCCTGCGTCATCCTGGTGGTC
CTGATGGTCATCACCTTCATGTTACCTGTAGACAAGGGAGACCGCATCTC
GTTCGGTGTCACCGTGCTGCTTTCCATGGTGGTGTCGCTTGTGGTCGTCA
CAGGTTTTCTGCCTGTCAAGGGGATCATTCCTTTCATCGCTCTGCTGATC
ATCGTGGCCATGGGGATGATGGCTCTCTTCATGCTGGTCACCCTCTTCAT
CGTCATCCTTCACAATAAGAAGGGGACACTGTCGCCGTGTGCTAGGAGGT
TCTTCTTGTGCTACATGGCAAGAGTACTATTAATGGGAGACCTTAGCAAG
ATGGCCACCAAAGGAGAGACATCTCTCAACCAAGGGCGAAGGTCTTCTCG
GTCCCTTAGAAGGAAGAGCCTTGCTAATGACAGCCCTACAAGGCTAGAGG
AGAATGCTGCCACTGCCATTGCTTTCGGACCCCCTAGGGCACAATTACAA
ATAGCGATGAAAAACGAACATCGCCTTGTTGAGTTACAAAATAGTATGGA
CGAACTCAATGTCAATGTCGGTAGACTCCTGTCGCAATCTAACGGTAACG
ACGAGGAGCTTCCGACCGATTACATGCTGTTGGCTGATGTGTTGGATAGG
CTGTGTCTGTTGTTATATATCGTCAGCATAATTGGGGCGGTCCCTTGTAC
TTTGTACTTGAGTCCTCGTAAGCGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000652 | genome | Sc0000652:30892..35170 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97168_cuf2 |
| Biotype | protein_coding |
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