|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97167_cuf0 >transcript:BL97167_cuf0-protein ID=transcript:BL97167_cuf0-protein|Name=transcript:BL97167_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=148bp
CGRARLNGTGGTFASPNHPNNYPEDQQCVYVIEVTLPKVVSLTFTAFDVE
EDYDFVYVFDGDTTDKRFQIEQYTGNTIPSPVMSTGSLLTVQFISDSVET
YTGFQATYSAVDKVYANCTVGQFRCASGTKCIKSWERCDGVANCRDRS Run BLAST on NCBI mRNA from alignment at Sc0000652:15720..19599+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97167_cuf0 ID=transcript:BL97167_cuf0|Name=transcript:BL97167_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3880bp|location=Sequence derived from alignment at Sc0000652:15720..19599+ (Branchiostoma lanceolatum)
CCTGCGGACGAGCACGTCTGAATGGAACGGGCGGTACGTTTGCCAGCCCG
AACCACCCAAACAACTATCCCGAGGACCAGCAGTGTGTGTACGTGATAGA
AGTCACTCTTCCCAAAGTAGTCAGCCTCACGTTCACGGCGTTTGACGTGG
AAGAAGACTACGACTTCGTGTACGTTTTCGACGGAGACACCACCGACAAA
CGGTTTCAAATAGGTAGGAGGCTAATTTAAATAGCGTATCGACATATTGA
TAAAGATCCCATTCAAATTTCATACTTCTATGTTTAGTGTCTTAGATTCT
TACCAGATGAATTTCAAAACGAAGAATTGTATAAAGATGTAAATTTGAAT
GTCAAACTTGCATGGTATATTAGTACAAAATGTTAAACTCTATACATTAT
ATGGTCTTCATACCAGTAAACCTTTTATACGTATCAGATTTTCGAAATAT
GTGTATATAACATGATCGAGTATGAAAATACAATAGTGTATCTGTATTTG
ATATGTATACAGTTTTAGTGCCCATGAAAACTACCTTTAATACTGCCACA
AAATTAACCCCAAGTCGCGAGACCTTATTGTACATGTTGGAAGGGAAAGT
GGTGGGGTAGGGTGAGGTGGCTTATGCTTGAACGAAAGGGCAAGGCCGAA
GAACTCAATGAGTAATTCATTGCGAGGACCTCATCTCTCCACCGTTGTTG
AGCGTAAGAATGCAAACTACCGTCGTCTGACAGTTTTGTTGCATTCCCAC
AAGGTCTTGCTATATTCTTAAACCAAAAGAATGACCTAGCCTTATTTGAA
TATACATATAATTGCAATAATCGGCAAAAAAGGGAAAATACAACCGTGTC
CCCTGTAGAGATTACCAGTGATATCTATTCAGGCTTCAAGAGGATGAAAT
ACTGAACAAAAAATATCAATCTTATTATGTGATGCAGCCACATGGTAAAG
CAGTATATAATGTTCAAGCAGTAGAGTGAAATTTCTTCTCTGTACTATTC
CTAACCTAGGACAATTGAGCTGTACAATCCTGTAAGCTATATGTATAGAT
AAGTTTTCCGTCTTTTTTTTTGATTGTTAACTATAAGGGAATTACACTAA
CATAGAGACAATTCCTGACCAGATATGTTTGTATACACAATTACAAGGTA
AAATACTTCCAACTATGAAATTAAAAATGACGTAGTTATGACAGCAAATG
TTCACACACTGGTGATTGCACTGTATACTAATACGCACGTATACGTGGTA
CTTAGCTTGATTGCCATCTATTATTCAGTACTGGCGCTGATATTATCATA
TACAGGATCCTTCAGATGTCACTATTACTAAAACCATTCATCTATAATAA
CACCTGAGTAATAACGCCCGATATAATGGCGTCCATCGTGCGTATCTAAT
ACACACCCTCTGACAAATAAGAAATGTTTTGAAAAAGACAATGGGCGCTG
CATACATTTTCAATTACTCTGCCTTTTTATACGCTTCTCTTTCATCAAAT
GCCACTGTGTAAAGAGAGACTGTGTCCAACATGACATAATGATATTGAGA
ACGAATTTCTGTTCATTATGGACTGTCCAACTTATGCTGATGACCGGCAA
AAATTGTTACAATCTATTGTATGTACGTCTGACACAATATTACCACCTAC
CAGGACAGAGATATTCAATACGATACTATCATGCCCTAGCTGTTCATATA
TCCACCTATGTAGGCAAATTTGTATATAACGCTGTGCAAAAACGAGACAA
TACCATACATTCCTGACACAGCATACTGTTATCAACATACTGTATTCTAG
AGCGTTAGTATGTACATTATTCCATATATTATTGTTATCGTTAGTCATAG
ATAGATTAGATTTAATTATCATATTTGTCAACACTCAGCAATATTTCAAC
TCTCACGTGCATAAGTTGCCATACATTGTACCAGTTACAATTATCGCACA
ATAATGTTCTTCTTCTTGTAAAATTGTGGAGTAACGCACGCAGTATTTCA
AGCGTAGACGCCATTGGCCATCAATAAATGCCAACAAAAGGTGATGGGAT
TTTAAAGCAAATTGTAGTAAGTGTATCAAAGTTAAAGAATACAAGATGCC
CTGGCCCAATTTTGCTATCAAAATCACCCACACTCTTTTTAGAGACACGT
TGTACATGTTGGTCTTATGCATACGTATGGGACACCTTGTGGCGGGATAG
CATCAAAATTATTCAACACAATACTCTACATTGCTTCATCTGGGAATGAT
CTATTTAAAACTCAATCAAAAATGTACACAGAAGGTAGATTAAATTGTTA
TTCTGTGGTTACTATACATAGTACGATGATAGTATGGTAAAGTTTATATT
CTCACAATTTCATTTTTTTTGCGTTTACAGAACAGTACACCGGTAATACT
ATCCCTTCACCAGTGATGTCAACAGGTAGTTTACTCACGGTCCAGTTCAT
CTCTGACTCAGTGGAAACATACACGGGGTTCCAAGCCACGTACTCTGCAG
TAGATAAAGGTACAGTTAACTATAAGGAACATCTGTAATACGAGGGATGC
TTTTAACGAACTCCGCCTCATCCCAAAAGGTGCTTAGCTCCAATTTTGTA
TCACAGTCAAATATTATGAAACATTTTATTATTACCAAAGATTTCAGATA
ACAATTTAAAATCAATGTGGGCATTTCGTTTGAGTTGACACTCAGTAACG
TTAGGTTATAGAGAATAAAAAAAACATGCTATTGGGTAATTGAGCTGCGA
CCTGAGGTGTGCAGGTCAACTTTCTCTGCTGAAAGTCAGATACCCTAGAT
GACATACGAAGGGAATCCTCATGAAACAATTTGGCAACGTCTTCGTAGAT
TTTTCCTGCCACGAGGAACACGACCCCCGCAGCTCTGATCACACTTCGCC
CTTGTTTTCCTCGCCGCTACTGATTTTCAAAAGGACCTCGACCTAGAAAT
AATACTCACAGTCACAATGCTCTGAAATTCGGTGGGTATCGATAAAAGGC
TTCATACTATATAGTTGTGCCCCGATATTGGAGTTTTGTACCTTATTTCT
GGATGAGGCTGAGAATTTATTGATTCCCCCTAGTACTATATCAAAGAACA
AGTAAGAAAAAATAGCAAAAGCAGCAGCCTTGTTTGATGGAAATCTTTTA
ATTATTTTTTACTGAAAGAGTAATCCTACAACTCGATATGCATGATTTGA
AATTCATGTTACCATTCTAATGATATGTATGTGCCAACATAAGATACTTG
CCAATTTTGACAGATGTGTTTTTGATTTATGAAACACTGCAATGTACGAA
ATTTTAGAAGTGTCTGTGTGTTTTTTCTTTCATTTTGTCATTACAATATA
TTCCATTGGTACTGGAATTCTGAAGAAACGTCAGCTGTTATGACACTTAT
GTTTCTCCTTAGTTGAGAATAAAAGAAAATTGTTATACGGTCATTCAACA
ACATAATGAAAGTATTCATGAATGATCTCATAGAATTCAAAGAATGCTTA
TCAAAGTTAAGCTGCAATGTCCAACAGAAAAAACGGACACCCAAATTTTC
GACTGATCAAGCCCAGTATTTGTCAAGGAATGATCTAGCAAACCGATTCT
TCTGTGACGTCACGTTATGCGGGTAGGGCACGTGACTCGAAGAGCAGTGA
CCGAGGGTGCCATAGACTTTCTGAAATTTATGATCCATTGCTCGCCGAGT
CACGTGTCCTATCTGCATAACGAAACGTCACATAGCAGTGATAATGAAAG
TATTCACGAAAGTCTGTTTATCACAGTGTACGCGAACTGCACTGTGGGCC
AGTTCAGGTGTGCGAGCGGTACGAAATGCATCAAGTCGTGGGAGCGTTGC
GACGGCGTGGCGAACTGCAGGGACAGGAGT Coding sequence (CDS) from alignment at Sc0000652:15720..19599+ >transcript:BL97167_cuf0 ID=transcript:BL97167_cuf0|Name=transcript:BL97167_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1332bp|location=Sequence derived from alignment at Sc0000652:15720..19599+ (Branchiostoma lanceolatum)
TGCGGACGAGCACGTCTGAATGGAACGGGCGGTACGTTTGCCAGCCCGAA
CCACCCAAACAACTATCCCGAGGACCAGCAGTGTGTGTACGTGATAGAAG
TCACTCTTCCCAAAGTAGTCAGCCTCACGTTCACGGCGTTTGACGTGGAA
GAAGACTACGACTTCGTGTACGTTTTCGACGGAGACACCACCGACAAACG
GTTTCAAATAGAACAGTACACCGGTAATACTATCCCTTCACCAGTGATGT
CAACAGGTAGTTTACTCACGGTCCAGTTCATCTCTGACTCAGTGGAAACA
TACACGGGGTTCCAAGCCACGTACTCTGCAGTAGATAAAGTGTACGCGAA
CTGCACTGTGGGCCAGTTCAGGTGTGCGAGCGGTACGAAATGCATCAAGT
CGTGGGAGCGTTGCGACGGCGTGGCGAACTGCAGGGACAGGAGTTGCGGA
CGAGCACGTCTGAATGGAACGGGCGGTACGTTTGCCAGCCCGAACCACCC
AAACAACTATCCCGAGGACCAGCAGTGTGTGTACGTGATAGAAGTCACTC
TTCCCAAAGTAGTCAGCCTCACGTTCACGGCGTTTGACGTGGAAGAAGAC
TACGACTTCGTGTACGTTTTCGACGGAGACACCACCGACAAACGGTTTCA
AATAGAACAGTACACCGGTAATACTATCCCTTCACCAGTGATGTCAACAG
GTAGTTTACTCACGGTCCAGTTCATCTCTGACTCAGTGGAAACATACACG
GGGTTCCAAGCCACGTACTCTGCAGTAGATAAAGTGTACGCGAACTGCAC
TGTGGGCCAGTTCAGGTGTGCGAGCGGTACGAAATGCATCAAGTCGTGGG
AGCGTTGCGACGGCGTGGCGAACTGCAGGGACAGGAGTTGCGGACGAGCA
CGTCTGAATGGAACGGGCGGTACGTTTGCCAGCCCGAACCACCCAAACAA
CTATCCCGAGGACCAGCAGTGTGTGTACGTGATAGAAGTCACTCTTCCCA
AAGTAGTCAGCCTCACGTTCACGGCGTTTGACGTGGAAGAAGACTACGAC
TTCGTGTACGTTTTCGACGGAGACACCACCGACAAACGGTTTCAAATAGA
ACAGTACACCGGTAATACTATCCCTTCACCAGTGATGTCAACAGGTAGTT
TACTCACGGTCCAGTTCATCTCTGACTCAGTGGAAACATACACGGGGTTC
CAAGCCACGTACTCTGCAGTAGATAAAGTGTACGCGAACTGCACTGTGGG
CCAGTTCAGGTGTGCGAGCGGTACGAAATGCATCAAGTCGTGGGAGCGTT
GCGACGGCGTGGCGAACTGCAGGGACAGGAGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000652 | genome | Sc0000652:15720..19599 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97167_cuf0 |
| Biotype | protein_coding |
|
