transcript:BL97153_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97153_cuf0
Unique Nametranscript:BL97153_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97153_cuf0

>transcript:BL97153_cuf0-protein ID=transcript:BL97153_cuf0-protein|Name=transcript:BL97153_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=150bp
MLDFTACAAFKGHDIWVGVILYNCVPRTYFKLGQYTRNSPTMRGKIHYIM
YEGGETRTGVAIRHMRDTSDFRDGVPGAAVILTDGQTSDDYAYEAGAARA
AGVDLYAVGVGFPAFVDQAALETITDYSDRVFDTTQPCVVAQKIVDDLCG
Run BLAST on NCBI

mRNA from alignment at Sc0000600:46962..49803-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97153_cuf0 ID=transcript:BL97153_cuf0|Name=transcript:BL97153_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2842bp|location=Sequence derived from alignment at Sc0000600:46962..49803- (Branchiostoma lanceolatum)
GCTCTTTCCCAGACCTTAGAACCACAATTAGGATGATTCGATTCCAAATT AAGGATGGCAATTATTCACGCTGTCTTGATTTGAGGGATAGCATCCAACC GGGTTTATATTAACGAGAAATCAAATACTCGTGGAACAAGAGGCAAAGAT ATCTAGGACCGGACAACACTGTCATTCATAATGATACCTGACCTAGGCAT GGCCTATTGGAATTTAGTAATAAGCACTTAGCAAACACCGTGTAGTGGGC AAAATATGTTCCAGTCAAACGTTATAAAACGAGATGTACAGAAAGATCCA TCATCTCTTTATCTGAAACAGCTTGCATCGCTGACATTGTTCTCGTCCTC GACCTTTCTTCGAGCATCCCGCGGACTCAGTTCGCCCTCGCCCGGGACTT CATGCTGGATTTCACGGCATGTGCGGCTTTCAAGGGCCATGACATATGGG TGAGTCGTTGATTTGTACTATCGTTACTAACCGTAGAACCAACAGTCCAC AAACTTCTTTTCTTAAGCCACTTTAGAGGCGTGCAGACATGTTAAAAGTT AGTCCTCACCGCACCAAACGGTGCATAAGGCGGCGCCCATCTCCGTTGCA GACTTGTGAGGAGCCTGAAATGTACTTACCTACATTAGCGACTTGGAACA TGGGCCTATCAGGTTTAAATAGGCTGCAATGGGCTTCTGACGACGTGAGG AAATAACGGCGACACTCTTTGCTCTTTCTCACTACGTGTTTCATAGGTCG GAGTCATCCTCTACAACTGCGTACCTCGGACCTACTTCAAGCTGGGCCAA TATACGCGCAACAGCCCCACGATGCGTGGAAAAATTCACTATATAATGTA CGAGGGAGGCGAGACTCGAACTGGCGTGGCCATCCGCCACATGAGGGATA CGGTACGAGACTGTTAATAACATGTCAATAAGAACGATATGGCACCGCTC TCAATGCTGCACTTGCTAGGTTAAACACAGTACCACATGGTAGAGGAGCT AATGCAGCACTTGCTGGGTTAAACACAGTACCACATGGTACAGAAGCTAT TGCTGCAATTGCTGGGTTAAACACAGTACCACATGGTACAGAAGCTAATG CTGCACTTGCTGGGTTAAACACAGTACCACATGGTACAGGAGCTAATGCT GCACTTGCTGGGTTAAACACAGTACCACATGGTACAGAAGCTAACGTGGT ACAAAATAGATATCCCTGGAATTCTCCATCTGTGATTTTCTGGTATTTTT TTCCAGTCCGATTTCCGAGACGGGGTTCCTGGGGCGGCGGTCATCCTGAC AGACGGACAGGTATGGAGACATGTTTTTACTTGTGCCAGGTGTTCTTTCT TGTGCCATGTGCTCCTTCTTACCTGTGTCGTGTAAGAACACATAAGCTAG GTGCCCTTACCTACTCCATGTATTCTAAAATGCTACGCGTTCCTACTTGT GCCTGGTGTTCTAACCTGTTGCAGTCTCTCAGATAAAGTGCCATTCATTA CTCATCCCTAGTGTCATGCTTCTCGTTCTCTCAGACAAGTGATGATTACG CGTACGAGGCCGGAGCGGCGCGGGCGGCAGGGGTTGATCTGTACGCTGTG GGTGTCGGGTTCCCGGCTTTTGTGGACCAGGCTGCGCTGGAGACGATCAC AGACTACAGCGACCGCGTGTTCGACACAACCCAACCCTGCGTGGTCGCCC AGAAAATCGTGGATGATCTGTGCGGTGGGTAGATGTTGCATTTTCAGAAC TACAGATGGATTTAAAGAGGTGCAATGAGTGGCTGAATGGTTAATGTCTT TAGCTAACAATCAAGAGGTTTGCAATTCTGGCCATGGGAAAAAAACGTCA GTGATTGTTTTCAGGAGTCAAAAAGGTTTCAACCAAACCCGACCTGTCGA CAAAGTTACTGATATAACTCAAACGTTATCCGTCTTATGCTTTATTAAGT TACTTACCTTATAATCTAAGGTTGGTGTTAGATTCATCAATGTCGTGTGA AATTTCTCTAGTTTCCCAAGCCCAGAATCCTTCTTCACTACGGACATATT ATGACATATAATGACTCATAGAGTCGCACAAGATTGGCAGTCAGACTAAG AACTAGCAGCTGATTTACAGAACGATTTCTTGTATGTCTTCAGGGTAAAG AATAACAGAGGCATCTGGACCGTCTGACTTGACCTGACCTGACCTGATCT CGACCACTACTTTCCAACGGACATCCAGTAATCTCCAAGCAGATGTTGGG GGGACAGATCATACCATTTCCTGACTGCTCAGTTTTTGTTGTTGACATTA ACGCTGCAGTCGGAAAATGTTGGCACCTTTTCTTCTAACGTCTACTTGGA GACATTTGAAAATTTCCAGGAAAGATAAACACCCTAAAGGGCTGGTACTA TATGTGATCTTCGGCGATATCAGAAATTCTATGATGGGAGGGGAGAGGGA GGTCCCAGCAAAATAACGGATTTTCCATATGTGGCCAATCAGAAAAATTC TGCTCCATTTGTTGGGTGGACCTTGCATAATTGACAAACAGTTCCACTTG GACATTAGATATCCCTTGAAATGTCTAACATGAGAAAGCTGAAAACATTT CGCTTAATTTGTCAAATCAATTCTAATATCAAATACGGTCGTTTCTAATA AAGAATATGATGACATTACTGCTGAAACCCTACTAATCTGCATACTTTAA ACCGAAGCATGACATGATTTACTCAGCAAATCGAAGAAAGGCTACATGAA ATCACTGAAATAAGTCCAAAAATGTCCCTATTTCAAACCAGTTTCAAACA GGAGCTGGCACCAATGAAAAGTGCCTGTCCAATCAAACTCAT

Coding sequence (CDS) from alignment at Sc0000600:46962..49803-

>transcript:BL97153_cuf0 ID=transcript:BL97153_cuf0|Name=transcript:BL97153_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2265bp|location=Sequence derived from alignment at Sc0000600:46962..49803- (Branchiostoma lanceolatum)
ATGCTGGATTTCACGGCATGTGCGGCTTTCAAGGGCCATGACATATGGGT
CGGAGTCATCCTCTACAACTGCGTACCTCGGACCTACTTCAAGCTGGGCC
AATATACGCGCAACAGCCCCACGATGCGTGGAAAAATTCACTATATAATG
TACGAGGGAGGCGAGACTCGAACTGGCGTGGCCATCCGCCACATGAGGGA
TACGTCCGATTTCCGAGACGGGGTTCCTGGGGCGGCGGTCATCCTGACAG
ACGGACAGACAAGTGATGATTACGCGTACGAGGCCGGAGCGGCGCGGGCG
GCAGGGGTTGATCTGTACGCTGTGGGTGTCGGGTTCCCGGCTTTTGTGGA
CCAGGCTGCGCTGGAGACGATCACAGACTACAGCGACCGCGTGTTCGACA
CAACCCAACCCTGCGTGGTCGCCCAGAAAATCGTGGATGATCTGTGCGGG
TAAATGCTGGATTTCACGGCATGTGCGGCTTTCAAGGGCCATGACATATG
GGTCGGAGTCATCCTCTACAACTGCGTACCTCGGACCTACTTCAAGCTGG
GCCAATATACGCGCAACAGCCCCACGATGCGTGGAAAAATTCACTATATA
ATGTACGAGGGAGGCGAGACTCGAACTGGCGTGGCCATCCGCCACATGAG
GGATACGTCCGATTTCCGAGACGGGGTTCCTGGGGCGGCGGTCATCCTGA
CAGACGGACAGACAAGTGATGATTACGCGTACGAGGCCGGAGCGGCGCGG
GCGGCAGGGGTTGATCTGTACGCTGTGGGTGTCGGGTTCCCGGCTTTTGT
GGACCAGGCTGCGCTGGAGACGATCACAGACTACAGCGACCGCGTGTTCG
ACACAACCCAACCCTGCGTGGTCGCCCAGAAAATCGTGGATGATCTGTGC
GGGTAAATGCTGGATTTCACGGCATGTGCGGCTTTCAAGGGCCATGACAT
ATGGGTCGGAGTCATCCTCTACAACTGCGTACCTCGGACCTACTTCAAGC
TGGGCCAATATACGCGCAACAGCCCCACGATGCGTGGAAAAATTCACTAT
ATAATGTACGAGGGAGGCGAGACTCGAACTGGCGTGGCCATCCGCCACAT
GAGGGATACGTCCGATTTCCGAGACGGGGTTCCTGGGGCGGCGGTCATCC
TGACAGACGGACAGACAAGTGATGATTACGCGTACGAGGCCGGAGCGGCG
CGGGCGGCAGGGGTTGATCTGTACGCTGTGGGTGTCGGGTTCCCGGCTTT
TGTGGACCAGGCTGCGCTGGAGACGATCACAGACTACAGCGACCGCGTGT
TCGACACAACCCAACCCTGCGTGGTCGCCCAGAAAATCGTGGATGATCTG
TGCGGGTAAATGCTGGATTTCACGGCATGTGCGGCTTTCAAGGGCCATGA
CATATGGGTCGGAGTCATCCTCTACAACTGCGTACCTCGGACCTACTTCA
AGCTGGGCCAATATACGCGCAACAGCCCCACGATGCGTGGAAAAATTCAC
TATATAATGTACGAGGGAGGCGAGACTCGAACTGGCGTGGCCATCCGCCA
CATGAGGGATACGTCCGATTTCCGAGACGGGGTTCCTGGGGCGGCGGTCA
TCCTGACAGACGGACAGACAAGTGATGATTACGCGTACGAGGCCGGAGCG
GCGCGGGCGGCAGGGGTTGATCTGTACGCTGTGGGTGTCGGGTTCCCGGC
TTTTGTGGACCAGGCTGCGCTGGAGACGATCACAGACTACAGCGACCGCG
TGTTCGACACAACCCAACCCTGCGTGGTCGCCCAGAAAATCGTGGATGAT
CTGTGCGGGTAAATGCTGGATTTCACGGCATGTGCGGCTTTCAAGGGCCA
TGACATATGGGTCGGAGTCATCCTCTACAACTGCGTACCTCGGACCTACT
TCAAGCTGGGCCAATATACGCGCAACAGCCCCACGATGCGTGGAAAAATT
CACTATATAATGTACGAGGGAGGCGAGACTCGAACTGGCGTGGCCATCCG
CCACATGAGGGATACGTCCGATTTCCGAGACGGGGTTCCTGGGGCGGCGG
TCATCCTGACAGACGGACAGACAAGTGATGATTACGCGTACGAGGCCGGA
GCGGCGCGGGCGGCAGGGGTTGATCTGTACGCTGTGGGTGTCGGGTTCCC
GGCTTTTGTGGACCAGGCTGCGCTGGAGACGATCACAGACTACAGCGACC
GCGTGTTCGACACAACCCAACCCTGCGTGGTCGCCCAGAAAATCGTGGAT
GATCTGTGCGGGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97153gene:BL97153Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97153_cuf0transcript:BL97153_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97153_cuf0-E1BL97153_cuf0-E1-1564476830-486208Branchiostoma lanceolatumexon
BL97153_cuf0-E2BL97153_cuf0-E2-1564476830-486205Branchiostoma lanceolatumexon
BL97153_cuf0-E3BL97153_cuf0-E3-1564476830-486203Branchiostoma lanceolatumexon
BL97153_cuf0-E4BL97153_cuf0-E4-1564476830-486201Branchiostoma lanceolatumexon
BL97153_cuf0-E5BL97153_cuf0-E5-1564476830-486199Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000600genomeSc0000600:46962..49803 -
Properties
Property NameValue
Transcript idBL97153_cuf0
Biotypeprotein_coding