transcript:BL97147_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97147_cuf2
Unique Nametranscript:BL97147_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97147_cuf2

>transcript:BL97147_cuf2-protein ID=transcript:BL97147_cuf2-protein|Name=transcript:BL97147_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=141bp
VTFNDVEVEQNWFYALAVRHTADNSTTVSSANVQVFTVGSSGVNGSSVGN
DSIQMNDSIPTNLTVDGNSTEQVSSLCPYETGLAYSQNITLIAGAGQVSV
TDPVQLDRRCRYQVSVHLDGASAPVTVDSLLLIPDVTKSIV
Run BLAST on NCBI

mRNA from alignment at Sc0000147:159190..162390+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97147_cuf2 ID=transcript:BL97147_cuf2|Name=transcript:BL97147_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3201bp|location=Sequence derived from alignment at Sc0000147:159190..162390+ (Branchiostoma lanceolatum)
GGTGACATTCAATGATGTTGAGGTGGAACAAAACTGGTAAGTTCAGTCAT TGAGACTATATATGATCAGATAACAGATAGACGCCATGTTGGAGCAGTCA TTATAGTGTGTTTGGCCAAGAAACCAGCGGTTTCTGTTCCCTGTTGGCAA CGACAGCATCCAAATGAATGACAGCATCCCAACAAACCTGACTGTAGATG TCTTCCAATACTGTGCCCCAGTCACAGTGGATATCAACCCACTGCTTGTA AGGCCTCAAGAAGGCTATTGGACTATCATTACCCTTCACTTTACTTTACA TAACAGATACTGTTGTTCCAAGCTGTGATTGAAAACTTGGAGAGACACAG TAGTTAGACAAGAAAGAGCATTCAACTTTGTCGGAACTAGCTGTTATGTG CTTATAAGTTTATAATGTATTTTGAATACATTCTATTACTTAATGGTTTG CTTTGATGTTTTTTTACTTTATTTTCATATGAAACATACTCTGCTCTAAT TTGGGAATTTCCCTTGATAAAGTCTTTCACTTGATATTTCTCGCTGGCAA GATTGGAGAATGCCAACAAGAATCTTTTTGTAAATTTCTGTTTACATGAT ATCATGATATACATGGGGGAAATATTATCAGATTCATATGTGTGTGACAG TTTAAATGTACATTTTTTTAAAGATTTATATTGATCTTTAGTGTCTTGAT TATGGTAGTGTATCATATGAAAGTGGCAAAGTATACAGTATGTATAAAAC CTTCATTGTCTTATATTAAATCAAATCTTTCAAATCTTTATTTGCTTAAA CCTTCATACAAAAACATGCACTTCTGAATCACATCTCATTGTCGCCTTGT ACAGGTTCTATANCAATTTACATGACTTTCCTCACTCAACCCAGATTTAA GAATGGGTACCTGATTTCAGTTGAGGATATAACATTTTTGCAAATAACTG CAATGTACTTACAGGTTTATAATGTCTTTTGAATAGTCTATTTTTTTTAT TATAATGAATTGCTTTGATGTTTTCACTTCATTTTTGTATTAAACATAGT TACCTTGCTCTGATTTAGGAATTTCCCTTGATAAGGTTCGTCACTTAATA TTTCTCTCAAGATTGGAGAGTGCTTTATTTTGTAAAACTCTTTTTACATG GTATAGTCCGATTCATATGTGTGTAACAGTTGAAATGTTTGTTTTGAAAA GATTTATATCAGTGTCTTGATTATAATCATTATAGTGTACCAGGTTGAAG TGGTGAAGCATGCACTGTGCAGAAAACCTTCATCGTCTTATATTAAATCA AATCTTTAAAATCTTTATTTGTTTAAACCAACATTGCAGAAGTACATATA TTCCATACAAAAACATGCACTTCTGAATCACATCTCATTGTTGCCTTGTA CAGGTTCTACGCTCTTGCAGTGAGGCACACAGCTGACAACAGCACAACAG TGTCATCAGCCAATGTACAGGTCTTCACCGTAGGGAGTTCAGGGGTCAAT GGGTCATCTGTTGGCAATGACAGCATCCAAATGAATGACAGCATCCCAAC AAACCTAACTGTAGATGGAAACAGTACAGAACAGGTGCAATCAGTTGAAT GTTTTACAGTAACGAAGATAAGTGTTATGTAACACTAGGACAAAATAGAA AGCAGAATTTCCTACTATTTCTTTACATTGTAGATTAGATACACACTATA GAGTTACCCTGGTATATCAATATTCAGGAAAACTTAAAGCAAACCTTGTA CAACTTGGTTTTTTTGCACAGTTCATAAATGCCAGAAATATGAAATAATC ATGTAAATATCCTGAAAATTTTTTCTACATGTCTTCCAGATTAAGTTTTC TTTTTCTCTAAAGATATTTTCAATTTTGGACCAAAATCTTTCATACTGGA TCTTTAAAAGAAGAAAAACTATACCTCTCCTTGGTGCTGGAAATGCTGTT ATTCCGCATGGTTATGCCATCAGATGAACTGGGCTGTCATCAGGGAGTCG GCCTTGTCTTTTGTGTGCTCAGTCCCTGCACATGTTCAATTCTTAGGATT GTGGACTTAATTTATTAGGTTTTTAACCTTCTCCCTGCTGCCTAAACCCA TAACCAATGCAGATCTAATGCCCAGCTGAAAATTTAAAAAGGCAAATTGT ACAAACATTTTACAGCAGCCGGTGCTTAGAGCGTGGACCACATTGGCGTG ACAAGTCAACACTATTTTTCCTGAAATAAGAATGTGAGCTCGCTGAAGGG CTATTCTTCCACTGATCGTGACAGAGAAGACAGACGTTATGTACAGTAGG GAAACTCCCCTAGCCTTTTTTTGTCAAGTAGAACAAACAGTGAACCACAG CTTTACGTCCTGTCATAAACACTGTGACCCTTTCCATTAGCATGTCGTGT GAGTGACATGTTGAGTGAGTGACATCTGCCAGGATTTGAACTCCCAACCT CTTGGTCCAAAGGCAGAGTTGCTAACCACTGGACTATGCACACTACTACT TGCAAAGTTGAGTTTGTCTAACACTTGGCACGCTGTACATGAAACCTTGA TCTCCAACAACTATTCTCATCTAAATCAACATCGTTGTTACCCTCATATA GCCCCATCAGGGGCAAAGTAGGGGGGGGGGTGGAGTTAAGGTCCCGGGCT AAGGCGGCCAGGCCTCCAGCCTGGCACAGAATGACTCAACGGTGTCAGCC GTCACAACCGTGCCAGGCAGGGCATTTCACTGGGGAATAGTACGGGTGAA GTATGAGTGTTCGTATGTGTCGGTTCTAGCATAGATAGTTTGAAACTTGA GATGGTGGCTCCCCCGGGTGCGCCTCTGAGTTTCAGTAAATTGTCAGTGT CTATATTAATATGGTTGTTAACTACATTGTAGAAGAAGGTGAGGCCTCCT TTCAGAGGTCCTGCAGGTCATTGAGCATTTGTGTCATGCTGCTAGTCCGC CGGATATCTAACTTTATGTCTACCTCCTGTTTTTCTTGTTTAGGTTTCCA GCTTGTGTCCGTATGAAACAGGCCTTGCCTACTCTCAGAACATCACCCTA ATAGCAGGAGCTGGACAGGTGTCTGTGACTGACCCTGTACAGCTGGACAG GCGCTGCAGGTACCAGGTGTCAGTACATCTGGATGGAGCAAGTGCACCTG TGACAGTTGACTCTTTGTTGTTGATACCTGATGTGACAAAGTCAATAGTC T

Coding sequence (CDS) from alignment at Sc0000147:159190..162390+

>transcript:BL97147_cuf2 ID=transcript:BL97147_cuf2|Name=transcript:BL97147_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1269bp|location=Sequence derived from alignment at Sc0000147:159190..162390+ (Branchiostoma lanceolatum)
GTGACATTCAATGATGTTGAGGTGGAACAAAACTGGTTCTACGCTCTTGC
AGTGAGGCACACAGCTGACAACAGCACAACAGTGTCATCAGCCAATGTAC
AGGTCTTCACCGTAGGGAGTTCAGGGGTCAATGGGTCATCTGTTGGCAAT
GACAGCATCCAAATGAATGACAGCATCCCAACAAACCTAACTGTAGATGG
AAACAGTACAGAACAGGTTTCCAGCTTGTGTCCGTATGAAACAGGCCTTG
CCTACTCTCAGAACATCACCCTAATAGCAGGAGCTGGACAGGTGTCTGTG
ACTGACCCTGTACAGCTGGACAGGCGCTGCAGGTACCAGGTGTCAGTACA
TCTGGATGGAGCAAGTGCACCTGTGACAGTTGACTCTTTGTTGTTGATAC
CTGATGTGACAAAGTCAATAGTCGTGACATTCAATGATGTTGAGGTGGAA
CAAAACTGGTTCTACGCTCTTGCAGTGAGGCACACAGCTGACAACAGCAC
AACAGTGTCATCAGCCAATGTACAGGTCTTCACCGTAGGGAGTTCAGGGG
TCAATGGGTCATCTGTTGGCAATGACAGCATCCAAATGAATGACAGCATC
CCAACAAACCTAACTGTAGATGGAAACAGTACAGAACAGGTTTCCAGCTT
GTGTCCGTATGAAACAGGCCTTGCCTACTCTCAGAACATCACCCTAATAG
CAGGAGCTGGACAGGTGTCTGTGACTGACCCTGTACAGCTGGACAGGCGC
TGCAGGTACCAGGTGTCAGTACATCTGGATGGAGCAAGTGCACCTGTGAC
AGTTGACTCTTTGTTGTTGATACCTGATGTGACAAAGTCAATAGTCGTGA
CATTCAATGATGTTGAGGTGGAACAAAACTGGTTCTACGCTCTTGCAGTG
AGGCACACAGCTGACAACAGCACAACAGTGTCATCAGCCAATGTACAGGT
CTTCACCGTAGGGAGTTCAGGGGTCAATGGGTCATCTGTTGGCAATGACA
GCATCCAAATGAATGACAGCATCCCAACAAACCTAACTGTAGATGGAAAC
AGTACAGAACAGGTTTCCAGCTTGTGTCCGTATGAAACAGGCCTTGCCTA
CTCTCAGAACATCACCCTAATAGCAGGAGCTGGACAGGTGTCTGTGACTG
ACCCTGTACAGCTGGACAGGCGCTGCAGGTACCAGGTGTCAGTACATCTG
GATGGAGCAAGTGCACCTGTGACAGTTGACTCTTTGTTGTTGATACCTGA
TGTGACAAAGTCAATAGTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97147gene:BL97147Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97147_cuf2transcript:BL97147_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97147_cuf2-E1BL97147_cuf2-E1-1564476830-346290Branchiostoma lanceolatumexon
BL97147_cuf2-E2BL97147_cuf2-E2-1564476830-346292Branchiostoma lanceolatumexon
BL97147_cuf2-E3BL97147_cuf2-E3-1564476830-346295Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000147genomeSc0000147:159190..162390 +
Properties
Property NameValue
Transcript idBL97147_cuf2
Biotypeprotein_coding