transcript:BL97143_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97143_cuf3
Unique Nametranscript:BL97143_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97143_cuf3

>transcript:BL97143_cuf3-protein ID=transcript:BL97143_cuf3-protein|Name=transcript:BL97143_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=99bp
DSLRHQNIMAATTAFSQFCSRFRPRYNARMTHRWRLLALIIFGLATRHTS
DAHPEVTLVNEYPCIDYLTGPTYLKCVTDHPPQRISFGRETNIGLDYER
Run BLAST on NCBI

mRNA from alignment at Sc0000247:356307..365878-

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97143_cuf3 ID=transcript:BL97143_cuf3|Name=transcript:BL97143_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=9572bp|location=Sequence derived from alignment at Sc0000247:356307..365878- (Branchiostoma lanceolatum)
GACAGCCTCCGCCACCAGAATATAATGGCCGCCACAACCGCGTTTTCACA GTTTTGCAGCAGATTTAGACCGCGTTACAACGCGAGGATGACACACAGGT GGAGATTACTTGCTCTGATCATCTTCGGACTGGCCACACGTCACACTTCA GGTGAGGAAAGCAGAACTCGCTTTTAGTTTTGTTTGTTTTTGTGCGACTT GTTCTTTTGACGCATTGGACCGTGTTGTCGCATGCTGAAAATGGCCACTT CCGGCAGCACAGTCGTTTTTCAAAGTTCTTTGATTGTTTAACGCCAACAT TTGGCAGAACAAGACTGAGAGAACAACAATCATGACCAAAGACATGTACG ATGGACTAGAGCAACATTGAATGTTGGCGTTAAGATTGTGACGAACGTTC AACGGATTACGTACTCTACGAACACGTAGTTGAAAGATATTTTCCACATG CGTGCCGACAGTCAAGTACCTCCATCCGGTGACTAAAATTCCTGTGATTC ACTCCCGTTTTCAAGCTCCAACTGTCTTTCCACCACCGAATATCATAACC ACTACTTAAATCAATCTCTCCCATCTGTAGAATCTGTATTTGGCCTATCT CACTGCTGTTGTTGGTGGTGAAAATGCAAAAGTTTGGAACGAATAATACA GGGCAAGTATGTCTGCATGCACCATTTTGTTGGGTGGTTTGAAGTGGTGA GCGGTAAATATCATAAATTTGAAAGTAATGGCATAAATGCAGAATATGAT GATGATCCGAAACATCCAGAAAAAGAACGCCTCCCACTATAATCGTCCTG TTCTTTTGGTCCTTGATGATTAATTAGGCTTTTCAAAAATGATAACTACA CATAGATATTGTTCTTTTATTCACCATGATAGGTCTCTCAGCGCCTTGCA AATGATTAATAAAATATAATTCAGTTCGCTCCGACGATAGGACATGGGCA TTTATTTAAAATCTAGGAAAACACACACCAATGCCATTCGTTATATTTGC CTAATGCTCCTTGTTGAGACTGGTCTAATTCTCTTTATCCTACATTGTGG GGCATCTACAACAAATAAAACGGTAATGAATACCCTTTCAACCCATTCCC ATACGGCCCACTGCGTGTTCTGTTAACGCACTTGTTATATTTTTAGCAAC CGACAAAAATGGGGCAATACTTATGGCACATTGTGAAAAGAATATTTCCC TACTTCTAACAGCGTTAAGCCCCTGTCACACTTGTGCGTATATACAAGTC CGCATGAGTTGCGTATTAACATGTTTTTGGTTTAGCTTAAGTTTGCAGCC GAAGAAGTAATTTCTTTTGTTTGATAACCAGACTGCACAACGATGGGTCC AAGTAGAAAACAACTTCCTCCCCGCAAAATTTACTTAAACCGAAAAATGT TACTGCGGAACTCATGCGCACTTGAATATACGCACAAGTGTAACAGGGCC CTAAAGTCGTTCAATTCATCCAGCATATTGAAATAGGATTTACTACGGTT CAGAAGTAGAGCAACGTGCTTTGTAGCTTTTTTTTGAGATCTTCTCGCAA ATAAACCTCGATCTAGAATCACCCACACGTTTTGGGCAATATAATGACAG TGACAATGACAATGAACTTTATTGCATATTCATGCCCAACATGGGCTAAA TGCGCATGCATTAGGTAACATGAAGTAAAAGAAAAGGAACATTGGGCTAT ATTCTATCTAAATCTACAGAGTCTCTTATCTCTTCTTGAAACATTTGTAC ACAAATTCACATAATTTTTCAATTACATCGTAGTTTTAGATGACATGATA CAGGAGAATAACTCGTTATTTGTAAGTTGCGCATATTTTTGGTCTAGTTG TATGGAACTTACAAGGGATCTGCGCATGTCTGCGTATAGTGAGCATTCTA AAATAAAATATATTTCATCTTCTCATATCTTCATACAATCATTGTCACAA AATGTACACAATCTGTTATTTGGTGGAGTCTGGTTTTGCCTGCAAACTTC AGTGGATGATCGCTGATGTAGGAGACAAGTTGAGCATGATCGTAAAACTT ACGATGAACACCAGTGACAGTACCGCACGAAAAGTGGGATTTACCAAATG AATAATAACAAAATCTGGTATTGTCTGCGTTAGGGGATGCACAGTGCCAG AATATAATTTTTGTATGTATTTTTTCATATCTATTAATTTTTTGAGTGAA CTCTGCATATCCAAACTACTATGTTATCATGTCCAAGGTAGTTATGGCAC GGGAATGGTAGCCTAAACAATAGCGATAAATACCAGGTAGGTCTGATAAT GGTTGATTATAACATAGGATACCAAAAAGCAACCATTACAAGACTTACCC GACATTAAACACAATTGGCAAATCTCGCTTTTCGTGCGGTGTATAGATAA CACACTATACCTTGATGGGACAAAATCGTCAGGCTTTCTTAGCTAACCAT TTCTAATGCCTAAGCCTCTTCTATGCGATTATAGTTTTGTATCGTCTGTA AAGTAGCAGTGAAACAACATTTTATTTCTATCTATCTATCTATCTATCTA TCTATCTATCTATCTATCTATCTATCTATCTATCTAGTTAGTTATTAGTT AGTTGGGCTGTGACAGCCAGAGCTGTCCAACTAGCCACTGGCTATTAAAA GAGCTTTCACTGCTGGCAAAGACAATACAGAGCATGGAATTTGACTATGA ATTTTACATCGCAGAACCCAACAAATCATAGAAAAAGCGTGGATTTTCAT GTTCCTTTTGAAGTCAAACCCAACATGTTTAGATATAGCCAGCACTAGTA TTTGAGAAGTCTCTTTTTGCAATGATGTCAATCGCTATCCATTGACATAT TTACGTCCCCTAAATTTCTACCATGGACTTGCAATAAGCCTTCAGGCAAG TTGACTTTCAATTAATGACATAAAACAATAGTTTACACCAATAAAGCCTT ATCTATGCTATCTAAATTAGTGTGAGAGTTCAGAGTCAGTTGTCAGTGTT CAATGTTTAGAGTATAGGTTTTTGGCGATGCCAAGATTCTTCATTTTCAG ACAGTGCGAGTGCCAGCACCTTTTATCCCCTCCCCCTATCAACTACGTTC TAGTTGATTATACAAGGCAATATAGTATATATTAGGTATAGTTTGAAATG AATACTTATACTGGGTATAGTTTGAAATGAATGCTTATACTGACTTTATC CCTGCATTAAGTGAAACGATTTCCCCCTACAAGCGATGGTAATCTCATCC ATGTGTTGAGACTATAGCCGAGAGTTTTAACGTCATTGCAATACAAATAT CTTGGTCACGATCGATAGCACTGGAAGCTCTTGTCTTATCTTAGATTATT CTATAATCATGAATCTGATGGTATGTTATACTGATGATTCGACGTCGTAG ATCGTTTTCATCCAAACCAATTCAACATATCAGCGGCTTCGTACACTTGA GACAAGTTGTGAGGACTAAGCTGCCGACATGACCTCTCTAATACAAAATC GTGGCACTTCCGATGATTTCAATAGCCTTATGCTATGTAATAATACATTG CAGCCTGTGCTTTTAACAGAACCATGAATTTTACTAAAACATAAGAAATG TTAGGTACTTTCAAGCGTGAACATGGTACAATAAGTATTGCAAGTTCTTG CCCGTAGGCTGATTGCAAGTACATGTAACATGAAAGGACGGACAGACAAT TGATAACAATATAGCATGTGACTAGTCTAGTCTAAATACTAACACTAAAT TCTACCTTATTTGGGTTTGACTTCTTTTTGCCTAGACAGTGGAAGACGAA TGATCCCACATTTTCTGTAATGTGTGGGTTTTGTGATGTTAAGAGTAGAG TAGTTTTCTTTTTGTCTGTTTCACAATCAAATGTCATGACCTATACGCAT TCGACTTACATTGTAACATGTTGCTGGAAAACGTCAAAGAGGATACCTTC TCTATGATTATGTATCACATAAAATATGTAGACCTATGAAATTGTGTAGT TAAAGGGTATAAGACACGAATGACATAAACATCAAGAATTTCCGGAAATT ACATAAAACATAATACTATTCAACTGACAGGCCCTGCAGGCCTACCTGGG GAAGATGTAAGAATGTAAGATAATACTTTTGTTTAATAACATAGAAATTT TTACAAAATATTCATACTTCGGATGTTATTGAGCATCGAACCATGAAAAC ATCATACCTCCAGCTTTTGATTCTTCCCACCAGGTAATTACATTAAAGAG TGACTTGCCCGCTCATGACGTCACACACGAACGTGGCAGCCGATTTGGAA CTTTACACAACGGCTCGGAAAGAACGTTATTTCTACAAGGAAACGAAATA GATATTGTTATGTCCTTTAATCAAATGTTATCACGATAATCAAGCACTGT TTGCTCATTATATAATGTTTTTCGCAAGCCGCTGTGTAAGGTTCCGAACC GGCTGCCGTCTTCCTTGTGACGTTATGAGCTGGCATTAGTCACTGATTAA TGTAATCACCTGGTGAGAAGATCAGATAAGAATGAAGAGCTGGACCATGG AAGTATGGTTTCTGATGGTTCAATGTTAGATAACATCAGAAGGGTGTGTA TTTGTTTTAAACGTTTATATTCTTTCAATGATGCTATTCCTATTTCAGGT AATAAGACAATGTTGTATTTTGGTGTCTTATGTCCTTTAAGTGTGGCCAC AAACTCTCAATATAAAGCATTTATCAAGTCTCTAAACTGTTTTTTTTTAG TTTTCGGACACAGAACATTATAGAAAAACGTATTGTTTTATAAAAGGTTA ACAAGATATAGCGGATGAACGACCCCCATAATGTTCTTTAATTATGTTTT TATTGATGATTTGGACCTTTTTTTCACAGAACTTTTTTGGAAAAGCCATG TCCAAAATCTTTGGTACTAAGAGTTAACCAAGCGTGGTTAAGCAACTAGG GTGTCACAGCAGCGAAATGATATTCTCCAGACTGGTATTTCGTCATAAAT GTTAAAATTGTCACATCCGTTGTGCTTTAAACTTTACTGCGACAGCTTTT ATATGGGTTTTCATATATCAACAGTGTCGATTGGTCGTACACTCTCGCCC TGAAAAAAACGATCTATAGGTGTGCGCATGCGCTTTACAAAATTGGCAGC CGCCATGTCCATGGTGTAGTACCCGGATGTTTACCGCCATGATGGGATGG AGTGTATGGGGTGAATTGCTCGCGTGGGGAGAAAACAACGATGCTTTTTT GCTTAATATCGATTTTTCACGCGTCTTTGACTCTTTTGTGGTGATTTTAC ATGGTAGTTGAACACCCAAAAAGGGTCACTTGTTGGCCACCTGTTCTGAA GTCGAGAAACACTCGAAGACCCGTTCTCGAGAGGCAATACGGGTAGGAAA ATCCCCGTGAAGTTGGGAATCTTGACAATTGAAGTAAGTGGACTGATATT TAGAACAGGGACCAAAAAATGACAGATCTATCGTTCAAGGTCCCCCTCTA CTGCCAGCTGAATTTTTTACAAGTGGCCTTGGCGTTCCAAGTAATACTTA CAGCATTTCCGAAAGCAATAGAAGTCCGGATGTCGAGGTAAAATTATTGA GAGTGAAGTAGACGGAGTGTCCCACTTGTGTGCTAATTCCTGTATGAAGT CCTCGGAGAATTGCTATGTATAAGGCCTCTGGGAACCCCCAAAACTTATG CAAGCGTGCAAATAAAATTTTAAAAAATGAATGGCATCTATTTGATCATT TTGCAGCTGCTTTGCACGATTTACAGTACAGTATAGTCCAAATCTTGGGG GGGGGGGAGCGGCGAAAATTGATGCGCGCGCGAATGTCATCCATGTAATC AAATCAACATAGCCTAATTTGAACGTCGGTCTCTGTGGTCTAGCTTTGGT TGAGAGGTTTTTTAAATCATTAATGGTGGTGTATCGAAATGACGGGAAAA TGGTTTACTTGGTCACACTTAAAGGAAAAATTCACAAAAAATTGAAAATC CTACTATGCTATGCTTGATATATTCCAAAGTCAAATTCTTACTTCAAGTT GTTTCACATAAGTCCGTCATAGTTTTGGGATCTTCCACGGTTCCACCATT TGCAACTTATGCCGTGCTGACGCCTTCTCATCTGATGATTATGGTACACT GAACACTGACGTAATATAATTCAATCATCAGGTGAAAAATCTAGAACACT GACGTCATACAATTCAATTATGAGGTGAGAAGGCGTCAGCACGGCATAAG TTGCATACGATCGAAAATCCAAGAACTATGACGGACTTATGTGAACAAAC TTGAAATAAGAACTTGACTTTGGAATATACTAAGCACGGCATAGAAGGAT TTTCAATTTTTGGTGTAGCTTTCCTTTAAAGGAGTCCTACACTCCAGAGG GCGGTGTTATTTTCCGCTAGATTATGTATCAATAAATACATAATCCGACG ACTTTTTACAGAATTCTGCTTGTGGTGAATTGCACAAGGTGTTTTTTTTT AACAATATGATACTCATCAAACCCGTGCAGACCCTACCCATGTATTCCCT TTGCGTAAACATACATCTTTAATCGTAAATATTTTTGGCATAAATGAGGT TGGTTAAGCACAATAAGAAGGCCAATTGTTGAGAAGATGTAAAAGAACAC ACAGCAAGACGAGTTTTTCTTAACCACCCTGACATTCTTTTTATAATCTA ACTTTTGTCAGTCATTGTCAAGCACATTGTAAGTCTGCACACTGTAATGT CATAGGCTGAGCACTGCACGAAATGGCCTCGTATCCCNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNATTATAATTCTATCCCAAACGT ACATTATCGATGTTGGTACCTTCAATGTACAATTTGAAATTCTATACATG ACCAATACAAAAACCTGCCTACCCTTCCAAATGAAATTCTCTGCGGGGGG TGATCCGTTACGCATTTCAAATAGGTCGGTCCCGTCAAATAGTCGATGCA AGGATACTCGTTCACCAACGTCACTTCCGGATGAGCGTCTGGAGAAAGTA CACAGAACAAAAGATATCGACATGATTCATATATTTTTGTAGAATCTTAC AATGAACATGTTACAGTAACTTTTATAATGTCAATGCATGACCTTCAACC AAATTCGTTGATCGCCAGAATGTCAACGAATTTCGAAACCGTCTGACCGA GTGTATTTCTCACCTGTAAAAACAATCCTGAAGTAATTATGGTGTAAATA TGAATAAATGAAATTATGGTGTTTACGGTTTGGGCTAAGGTGGTAAGGTC TTTACCAGGAATAATAATTTCTTTAAATCCTGTTTCCATTTATGTCCAGG CAGTTGTTTATTGTTACACTAGGTAGTAACCAAGGCAGTGTAGCTGGCCG GAGCTTAACCTCTGCTTGGAGAGTACGTAGTTGGCCATAGCTTACAGTGA CTGTACCACACCTTCAAAATGGGGGTGTCTTTCTCTAATATTACATTATC TAGAAATACTACTGCGGTATCCAAAATCAGCGTACATTAATATTATCTCG CCGATACTAGCAGACGACATGCCAAAGTCCATACAAATGCATCAAAGTGA TCTTGAGTTATAGCTCCGAACGCTCAAAATATTAACCACAATACCCCAGT TGGCAAAATAAGATGAGGACAGGAGTCGGTGACCTGCGACCATGGGCATC CCCTTAAAGGAGTCCTAAAGTCCAGAGGGAGGAACTATTTTCCAAAAGAT GATAATTTTAGGAGGTAAAATTTGATATTTTTTACAGTATGCGATAAAGT ACCCACTAGTTCTGTGCGCATCAAAAAGCATCCAGTATTCTACTAAATTC CCCAGGTGACCCTCTATTTTCTAATTAATTAAATTAAAAAAACCTCCACT GCACGAAATGGCCTCGTATCCCGGCGTATACGTAGAGGGATTCCTCCGGA AATATTCCATATCCCGGTGCGGATTTAGCGTATCCGTTAAAACTAACGGA TACGCTAAATCCGCACCGGGATATGGAATATTTCCGGAGGAATCCCTCTA CGTATACGCCGGGATACGAGGCCATTTCGTGCAGTGGAGGTTTTTTTAAT TTAATTAATTAGAAAATAGAGGGTCACCTGGGGAATTTAGTAGAATACTG GATGCTTTTTGATGCGCACAGAACTAGTGGGTACTTTATCGCATACTGTA AAAAATATCAAATTTTACCTCCTAAAATTATCATCTTTTGGAAAATAGTT CCTCCCTCTGGACTTTAGGACTCCTTTAAGGGGATGCCCATGGTCGCAGG TCACCGACTCCTGTCCTCATCTTATTTTGCCAACTGGGGTATTGTGGTTA ATATTTTGAGCGTTCGGAGCTATAACTCAAGATCACTTTGATGCATTTGT ATGGACTTTGGCATGTCGTCTGCTAGTATCGGCGAGATAATATTAATGTA CGCTGATTTTGGATACCGCAGTAGTATTTCTAGATAATGTAATATTAGAG AAAGACACCCCCATTTTGAAGGTGTGGTACAGTCACTGTAAGCTATGGCC AACTACGTACTCTCCAAGCAGAGGTTAAGCTCCGGCCAGCTACACTGCCT TGGTTACTACCTAGTGTAACAATAAACAACTGCCTGGACATAAATGGAAA CAGGATTTAAAGAAATTATTATTCCTGGTAAAGACCTTACCACCTTAGCC CAAACCGTAAACACCATAATTTCATTTATTCATATTTACACCATAATTAC TTCAGGATTGTTTTTACAGGTGAGAAATACACTCGGTCAGACGGTTTCGA AATTCGTTGACATTCTGGCGATCAACGAATTTGGTTGAAGGTCATGCATT GACATTATAAAAGTTACTGTAACATGTTCATTGTAAGATTCTACAAAAAT ATATGAATCATGTCGATATCTTTTGTTCTGTGTACTTTCTCCAGACGCTC ATCCGGAAGTGACGTTGGTGAACGAGTATCCTTGCATCGACTATTTGACG GGACCGACCTATTTGAAATGCGTAACGGATCACCCCCCGCAGAGAATTTC ATTTGGAAGGGTAGGCAGGTTTTTGTATTGGTCATGTATAGAATTTCAAA TTGTACATTGAAGGTACCAACATCGATAATGTACGTTTGGGATAGAATTA TAATGTTTCTGTTAGTTTCTTCGGGACGGGAACCTGGAAATGATACTGCA GCAGAATGATACTGCAGCAGAACTACCGATTTTGATATCTGGAACTGCAG GGGCCATTTTTGTTGCAGACTTTGATAGAGAATAACTCAAGAAGAGGTTG ACGGATCATCATAAGTTTTGGTATGTTAATAGCTCGAGTGATGATTTACA AAATCAGATACTTATTATGCAAATCAGTTTGTAATTTACATAATTAATGA GGAAAGTTTATACGTCCGCTGCGTTGTACCACCTCTTTAGGAGACGAACA TTGGGCTGGACTACGAACGATT

Coding sequence (CDS) from alignment at Sc0000247:356307..365878-

>transcript:BL97143_cuf3 ID=transcript:BL97143_cuf3|Name=transcript:BL97143_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=891bp|location=Sequence derived from alignment at Sc0000247:356307..365878- (Branchiostoma lanceolatum)
GACAGCCTCCGCCACCAGAATATAATGGCCGCCACAACCGCGTTTTCACA
GTTTTGCAGCAGATTTAGACCGCGTTACAACGCGAGGATGACACACAGGT
GGAGATTACTTGCTCTGATCATCTTCGGACTGGCCACACGTCACACTTCA
GACGCTCATCCGGAAGTGACGTTGGTGAACGAGTATCCTTGCATCGACTA
TTTGACGGGACCGACCTATTTGAAATGCGTAACGGATCACCCCCCGCAGA
GAATTTCATTTGGAAGGGAGACGAACATTGGGCTGGACTACGAACGAGAC
AGCCTCCGCCACCAGAATATAATGGCCGCCACAACCGCGTTTTCACAGTT
TTGCAGCAGATTTAGACCGCGTTACAACGCGAGGATGACACACAGGTGGA
GATTACTTGCTCTGATCATCTTCGGACTGGCCACACGTCACACTTCAGAC
GCTCATCCGGAAGTGACGTTGGTGAACGAGTATCCTTGCATCGACTATTT
GACGGGACCGACCTATTTGAAATGCGTAACGGATCACCCCCCGCAGAGAA
TTTCATTTGGAAGGGAGACGAACATTGGGCTGGACTACGAACGAGACAGC
CTCCGCCACCAGAATATAATGGCCGCCACAACCGCGTTTTCACAGTTTTG
CAGCAGATTTAGACCGCGTTACAACGCGAGGATGACACACAGGTGGAGAT
TACTTGCTCTGATCATCTTCGGACTGGCCACACGTCACACTTCAGACGCT
CATCCGGAAGTGACGTTGGTGAACGAGTATCCTTGCATCGACTATTTGAC
GGGACCGACCTATTTGAAATGCGTAACGGATCACCCCCCGCAGAGAATTT
CATTTGGAAGGGAGACGAACATTGGGCTGGACTACGAACGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97143gene:BL97143Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97143_cuf3-E1BL97143_cuf3-E1-1564476830-407812Branchiostoma lanceolatumexon
BL97143_cuf3-E2BL97143_cuf3-E2-1564476830-407810Branchiostoma lanceolatumexon
BL97143_cuf3-E3BL97143_cuf3-E3-1564476830-407808Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97143_cuf3transcript:BL97143_cuf3-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000247genomeSc0000247:356307..365878 -
Properties
Property NameValue
Transcript idBL97143_cuf3
Biotypeprotein_coding