transcript:BL97142_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97142_cuf0
Unique Nametranscript:BL97142_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97142_cuf0

>transcript:BL97142_cuf0-protein ID=transcript:BL97142_cuf0-protein|Name=transcript:BL97142_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=141bp
SWHVGKHCETLRDACNPNPCRNGGTCEVLQEEGSSPVENDDKHKCHCIAG
YYGLYCERVDHCEPDNPCLHGGTCTTDWRSYVCHCPTGFAGVNCADEDPD
AEEGHFMAILAPLLAAMVVLGGGTTGVCYFLKKKNVITPDR
Run BLAST on NCBI

mRNA from alignment at Sc0000247:347992..350650-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97142_cuf0 ID=transcript:BL97142_cuf0|Name=transcript:BL97142_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2659bp|location=Sequence derived from alignment at Sc0000247:347992..350650- (Branchiostoma lanceolatum)
TTCCTGGCACGTGGGGAAGCATTGCGAGACGTTACGAGGTAAAAACAAAG TTTTGTACTCTTTTGTTTAATAGAAATTGGGCCTGCAAACAATGAAAATC AAGGAAATCAGTCGTTCCTTTCTTCAGCTATTCCCCTTGGAAGATTTTGA CAAAAACGCCCCTGCAGTTCCAGAGCAAGCTGCTAGGGGGCCCAAACATA CACAACTTATTTCTTACATCACAAGCTATCTGCCAACACAAAATCAAGAC CATAGCATGTCCAGCTCAAAAAAATAATNATGAAAAGATCACTTTGTTCA CACCTTTATCTGTTCAGTTTTAAATTGGGTGTGTACTTACGTCCATATTC TTTCTTCTTTTATCACGTTGGTTGTTTTTATATATATATCGGATAACTAG GCATTCATATAGATGTCTAAAACATAAACTATGTGGTGATCAACAGATGC CTGTAACCCCAACCCCTGCCGAAATGGAGGAACCTGTGAGGTTTTACAAG AGGAGGGGTCGTCGCCGGTGGAGAACGATGACAAGCACAAATGTCATTGC ATCGCAGGGTACTACGGCTTGTACTGTGAACGAGGTAAGTAGCGTTTAAG TCCCATAGCAGGAAACTTAAACTGTGTTGTTATAATGCATTATGAAGAGC TGAAAAAATTTACTCACCTGAATTTTCGACTGATTCGCTCAGTTTTCTTC AGCTTTCTGCCCCAATCGCTCTGGACATTTGAGTTTTAGTTTTTGTGACG TAATCAATGGGTCAAAGGTTGCTGAAAGTCGGTGTCGCCCCCCGTCTTGG TTGAGAGAACGTTGGTGAGCCCTAATGCAGACTGCCTCCTTTACCCCTCT CACAAAGTAGTCATAGTCGGTATCCAGAATATCAACACCCTTCAACGTAA CTGTCTGACCCGGTGACTCAATATGAACCAGGACGGGGGGCGTTATCTAC CTCCTGCAACCTTTGACCCAGTGATGACGTCACACATGAATAAAATTCAC GTACCTTTTTGTAGTTGGAAATTTTTTTGACTATTCATACAGTTAAATCC TTGTGAAAACTTTGCTCCCGATCTCTTCCCGAACACGGTCGGCACTGGGT TTGGGAGTCTCCTAGTTACCAACTGAGTTGGTGCTGGCATACACTAAGAC ATACCTGTACAACTCCAATTCTATATGACTTTGAAACGTTGTTTTCCCCC GCCCTAGTGGACCACTGTGAGCCGGACAACCCGTGTCTACATGGCGGGAC TTGCACCACAGACTGGCGGTCGTACGTCTGTCACTGTCCGACGGGATTCG CTGGCGTCAACTGCGCAGGTGCGTGATGCGATTTCAAATCCATTCCCGCT TCGTCAAACTTCCTATAACCTTACCTACCTATTCTCTTCGTTCCGGGTAT GTTCATAGATGTATTGATATCGTATCGTTTTACTGTCAACAGAGTACAGT ATAACGTTTTAGTTACAGCTTTGCGTAGCAAAACCTTTGTTGGCATGTGT GGTGGCCGCCATCTTGATTTTGGGAGGGGTGTCTTTTGGGGTCGCTAGCG TTCTCTCTATTTCTAACAAATCGGCACACAACTGTCACACATTCAACTCA AATAAAAAGAAAAATTCAATACCAATTCATATTTATAAAAATACCCCGTA ATCGCTAATCTAACATAGCAAACCTGAAGTATATGTAGCACAAATACTTA ACTCTAATTTTGTGTGTGTCTGCAGTGTTGATATGTGAATAAAAAATTGA AGAATTAAATTGAAGATTGTGCCATATTATTATTAGGGCGATACATTTTA ATCTTACCCATGGCATTTTCATCTTCATTTCAATCGACGTTCCGTTAACC GGGTGTCACATTCCCCAGGGCATTTATTGTTACTTGACAACATTTATGTA CTAGTATACAATACACTCCTTACGTTTGGGACCGCATTGTAAACACAACA TCAACTATCTCTGTATACATGTAAATGCTTTACTTTTGGGATCACATCTG CAAGCAGCGACACCTATAGCTGCAGTGCAAAATGAACCAGAATTGCTCCA ATGAAAAGCTTAGCTATGTACAGGGAGTCTTGTTTACTTTTTGTTTCAAC TTGTTTTGCTTTTCCTCGAAAGATGAGGATCCCGATGCAGAGGAAGGGCA CTTCATGGCAATCCTGGCGCCCCTTCTAGCAGCAATGGTGGTGTTGGGTG GAGGGACGACGGGAGTTTGTTACTTCCTGAAGAAGAAAAACGTCATCACT CCAGACCGCTGAGATAAAGTCTGAGGCTAAAGATGAACGCGAGAATGAAC AGGCTAGAAAACAGTGGCATTAAATGTCAATTTCATAAAGATTACAGCAA CTAGAATATTTCCAGTTTTCAAGCCTCATAAAATGCTCTGGGTGCCTTTA ACAAGCTCACAAAAGACACCACCGAGTAGTCGTGTTTTTTTCTCCATTGA AAGAGAAAAATAAAAAGACAGAATGACAAGATTAAAATCTTGTTTTAACA CTTTTCTCTGCAATAAGTGTGAATCAAAACTTGACAGAAAAGTGGCAGAA TGACAATATTAAAATACTGTTTTGTTAACACTTGTCTTTTCAATAAGTGT GAATCGAAAATTGTATGAACCGCCGTAATACAAACAAGTATGCTTTAAAT TTTCATGTG

Coding sequence (CDS) from alignment at Sc0000247:347992..350650-

>transcript:BL97142_cuf0 ID=transcript:BL97142_cuf0|Name=transcript:BL97142_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1704bp|location=Sequence derived from alignment at Sc0000247:347992..350650- (Branchiostoma lanceolatum)
TCCTGGCACGTGGGGAAGCATTGCGAGACGTTACGAGATGCCTGTAACCC
CAACCCCTGCCGAAATGGAGGAACCTGTGAGGTTTTACAAGAGGAGGGGT
CGTCGCCGGTGGAGAACGATGACAAGCACAAATGTCATTGCATCGCAGGG
TACTACGGCTTGTACTGTGAACGAGTGGACCACTGTGAGCCGGACAACCC
GTGTCTACATGGCGGGACTTGCACCACAGACTGGCGGTCGTACGTCTGTC
ACTGTCCGACGGGATTCGCTGGCGTCAACTGCGCAGATGAGGATCCCGAT
GCAGAGGAAGGGCACTTCATGGCAATCCTGGCGCCCCTTCTAGCAGCAAT
GGTGGTGTTGGGTGGAGGGACGACGGGAGTTTGTTACTTCCTGAAGAAGA
AAAACGTCATCACTCCAGACCGCTGATCCTGGCACGTGGGGAAGCATTGC
GAGACGTTACGAGATGCCTGTAACCCCAACCCCTGCCGAAATGGAGGAAC
CTGTGAGGTTTTACAAGAGGAGGGGTCGTCGCCGGTGGAGAACGATGACA
AGCACAAATGTCATTGCATCGCAGGGTACTACGGCTTGTACTGTGAACGA
GTGGACCACTGTGAGCCGGACAACCCGTGTCTACATGGCGGGACTTGCAC
CACAGACTGGCGGTCGTACGTCTGTCACTGTCCGACGGGATTCGCTGGCG
TCAACTGCGCAGATGAGGATCCCGATGCAGAGGAAGGGCACTTCATGGCA
ATCCTGGCGCCCCTTCTAGCAGCAATGGTGGTGTTGGGTGGAGGGACGAC
GGGAGTTTGTTACTTCCTGAAGAAGAAAAACGTCATCACTCCAGACCGCT
GATCCTGGCACGTGGGGAAGCATTGCGAGACGTTACGAGATGCCTGTAAC
CCCAACCCCTGCCGAAATGGAGGAACCTGTGAGGTTTTACAAGAGGAGGG
GTCGTCGCCGGTGGAGAACGATGACAAGCACAAATGTCATTGCATCGCAG
GGTACTACGGCTTGTACTGTGAACGAGTGGACCACTGTGAGCCGGACAAC
CCGTGTCTACATGGCGGGACTTGCACCACAGACTGGCGGTCGTACGTCTG
TCACTGTCCGACGGGATTCGCTGGCGTCAACTGCGCAGATGAGGATCCCG
ATGCAGAGGAAGGGCACTTCATGGCAATCCTGGCGCCCCTTCTAGCAGCA
ATGGTGGTGTTGGGTGGAGGGACGACGGGAGTTTGTTACTTCCTGAAGAA
GAAAAACGTCATCACTCCAGACCGCTGATCCTGGCACGTGGGGAAGCATT
GCGAGACGTTACGAGATGCCTGTAACCCCAACCCCTGCCGAAATGGAGGA
ACCTGTGAGGTTTTACAAGAGGAGGGGTCGTCGCCGGTGGAGAACGATGA
CAAGCACAAATGTCATTGCATCGCAGGGTACTACGGCTTGTACTGTGAAC
GAGTGGACCACTGTGAGCCGGACAACCCGTGTCTACATGGCGGGACTTGC
ACCACAGACTGGCGGTCGTACGTCTGTCACTGTCCGACGGGATTCGCTGG
CGTCAACTGCGCAGATGAGGATCCCGATGCAGAGGAAGGGCACTTCATGG
CAATCCTGGCGCCCCTTCTAGCAGCAATGGTGGTGTTGGGTGGAGGGACG
ACGGGAGTTTGTTACTTCCTGAAGAAGAAAAACGTCATCACTCCAGACCG
CTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97142gene:BL97142Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97142_cuf0transcript:BL97142_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97142_cuf0-E1BL97142_cuf0-E1-1564476830-407802Branchiostoma lanceolatumexon
BL97142_cuf0-E2BL97142_cuf0-E2-1564476830-407799Branchiostoma lanceolatumexon
BL97142_cuf0-E3BL97142_cuf0-E3-1564476830-407797Branchiostoma lanceolatumexon
BL97142_cuf0-E4BL97142_cuf0-E4-1564476830-407795Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000247genomeSc0000247:347992..350650 -
Properties
Property NameValue
Transcript idBL97142_cuf0
Biotypeprotein_coding