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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97140_cuf0 >transcript:BL97140_cuf0-protein ID=transcript:BL97140_cuf0-protein|Name=transcript:BL97140_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=213bp
SDVDECSPNQCGNIYADVENRVCRNTPGSFSCTCRPGYTDVDGTCTGSNI
YTGKVTITSATFTTDFNNLQRETTQVFVAQVVIAINSIFQNSSLASVYLT
SVITSLEEGSVVAQFNTILQAGAAADESAVEAAFKEGLTNISSAGTVNGL
TFNRSSAAFSDVNECLSTVDNDCSPNANCTNTAGSFSCVCKTGYLDSHTA
TPGRTCVGMFGGE Run BLAST on NCBI mRNA from alignment at Sc0000448:81001..83777- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97140_cuf0 ID=transcript:BL97140_cuf0|Name=transcript:BL97140_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2777bp|location=Sequence derived from alignment at Sc0000448:81001..83777- (Branchiostoma lanceolatum)
GTTCAGATGTTGATGAATGTAGTCCCAACCAGTGTGGCAACATCTATGCT
GATGTGGAGAACAGGGTGTGCAGGAACACTCCTGGCAGTTTCAGTTGTAC
CTGCAGGCCTGGCTACACTGATGTGGATGGAACATGCACTGGTAAGCTAT
TTTTGTAGATGTTCATAACATTAAATTTTAATGCAACATAAAACAATTGG
AGCATAATGCAACATTTAGCTACAATGACTTTTCTTACATGTACAAATTA
CATTTCTACATCTGGAAAATGATCTTCATTAAATTTTGTACCTCTCTTGT
CCAGGTTCCAACATTTACACCGGCAAAGTTACCATAACATCAGCCACCTT
CACTACAGACTTCAACAACCTCCAGCGGGAAACAACACAGGTCTTTGTAG
CTCAAGTGGTCATAGCTGTAAGTATCAGTAACCATGGGCAGGCATTTGCA
CTAGGATTTGTTTTTGTTTTGGCGGCTCAACTTACCGGTAACTAATACTT
GCAGTTGTTGCGTGTTTGGTAAAAGATTATGTATGCCAGGAATAGGTAAG
GTGACAAAACTCCCCCCTGTGGCACTCCGGATGTGATGTCTTGCCAGCTG
CTGAACTGACCGTGGCAACGACACGTTGTTTCCTGCCGGACTGGTAACTG
TAGATCCAAGTGGGATGGATGGAAGGAGGGAAAGATGGAAGGAGGGAGAG
ATGGAAAGGCGGAGGGATGGAAGGTTGCCAGTGCATGTTTTACATTACTA
ATCAACACTTACTGTTGATTAGTAATGTGAAACATGCACTGGCAACCTGA
AAACAGTATCGGTTCAATAAGATCAAGGAGGTTCTATCATGATGATAGAA
TTTCCTTGACAAAATGTATGTTACAGTATTTCAGTTGTTGTTGTTTTTCC
CCAGATCAATTCAATCTTCCAGAATAGCAGCCTTGCAAGTGTTTATCTGA
CTTCAGTTATCACTTCCCTGGAGGAAGGGAGTGTGGTGGCACAGTTCAAC
ACAATCCTCCAGGCCGGCGCTGCGGCAGATGAGTCTGCAGTAGAAGCAGC
ATTCAAGGAAGGATTGACTAATATCAGTTCAGCTGGCACCGTCAATGGAC
TCACTTTCAACCGGTCGTCTGCTGCTTTCTCAGGTACATTTTTTGTATCT
CAAGTCACCGTTTTGAGGATTTAAAAACCGATTTTCTTTTCTTTTCTGAA
TAGTAAAATGCAGTCCATTGCCACTTATCTTCATTATCCCTCTTAAATTA
CACTTTTTTAGTAATTCTTACCAGTATATTCAACATTTGTAATTTCCTCC
ATGTATTGTAGTATGCTGTAAGGCCACACCAACTTAATTTTATGGATGAC
ATCCGTGCGCGCATTGATTTTCGCCTGTTCTCAAAAAAAAAATAATAATC
ACCTCCGAAGATACTTGTAGACTCATATTGCCGCAAAGGGGCAGCATTGA
GCCCGCTTGTCGTAATACACTATATACACTCACATTGTCCAACACAACTG
GTATGTATGTGACTAGGAGCGATTGAAGTGGGCGCCGCCCCTCATGAGCC
CAGTAGTATATTGTTCATGATATGACAATATTTGCTCTGACTGAAGGCGT
GATGTTGTGTACACAGCCGAACACATTTTTTTCTTTGCAATTGAACGGCC
AAATGTTACATATGGGTCTTTAAACCAGGCATCATCCATGTTAAAAGCAC
TTTTATTAATATTAGCCTGGGAGCCATCCTATTTCTACCGGGGCTCCTAC
ACTCTCTTCCCTAAAAAAAATTTTAGGGAAGCGAGTGTAGGAGCCCCGGT
AGAAATAGGATGGCACCCAGGCTACTTTAATATGAGCTAATGCCAACAAA
TAAAGACTTGTTTGTTTGTTACACTGTGTTCTGTGGTTTAATTGGCAATA
CCAGCTATTTAGTCCTCCGGTTTATCTTTTTTTTTTTTTGCTAGATTTTT
CTTTTTTTCGCCCTCGCGCATTAGTTTTGGGGACTCCAGAGGATGTCATC
CATAAAATTAAGTTGGTGTGGCCTAAGTCTCTGATCCCTGAATAACTTTC
ATCAGATTGCAAAGTCACTGGATAACAAAGTTCTTTGTACAACCAAGTGT
TTTACTCACACCGATGATTCTGTGGTCATCTGTAACCTTCTTCAGGGCAG
TTCTGACTGGTTCTACTTCGCTCTCAGCTAGGTGTCGCCCAGGGCTTAGA
TGCACTCCCCTATGCTTGGCACTGTATTGTTAACAACATATTAACTATCT
ATGTAATGTAAATCCTTTGTGTTTGGGGCAGCATCTGTAAGCAGTGACTG
TACATGATTGTACAGATACAAATGGTACAAGTCAGAGTTGCTCTGAGGAA
GGTGTCAGACAGTCACAGAAACATCAGACTGTGAATAAGACACTTGGTTG
TGTACAAAGTACTTTGTTATCCAGCGACTTTCCTCTATTTTGCTGTCTAT
TATTTTGACTGTTTATTCTTCCCCAGATGTGAATGAGTGCCTGTCTACTG
TGGATAATGACTGCTCCCCCAACGCTAACTGCACCAACACGGCAGGGTCC
TTCAGCTGTGTGTGTAAAACTGGTTACCTGGACAGTCACACCGCCACTCC
TGGCAGGACTTGTGTTGGTATGTTTGGTGGAGAATAGGCCGCCGCACCGT
GGCAGAAGCTCATTACGGCACCGTCGTGAAATTTTTACCAATTTTCTTTT
TGATTTGCGGTCACACTGACGTGCGGCGCATTTGCGTTTGACGCCCAGAT
AATTATTGCTCGACAATCGTACATGGC Coding sequence (CDS) from alignment at Sc0000448:81001..83777- >transcript:BL97140_cuf0 ID=transcript:BL97140_cuf0|Name=transcript:BL97140_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2568bp|location=Sequence derived from alignment at Sc0000448:81001..83777- (Branchiostoma lanceolatum)
TCAGATGTTGATGAATGTAGTCCCAACCAGTGTGGCAACATCTATGCTGA
TGTGGAGAACAGGGTGTGCAGGAACACTCCTGGCAGTTTCAGTTGTACCT
GCAGGCCTGGCTACACTGATGTGGATGGAACATGCACTGGTTCCAACATT
TACACCGGCAAAGTTACCATAACATCAGCCACCTTCACTACAGACTTCAA
CAACCTCCAGCGGGAAACAACACAGGTCTTTGTAGCTCAAGTGGTCATAG
CTATCAATTCAATCTTCCAGAATAGCAGCCTTGCAAGTGTTTATCTGACT
TCAGTTATCACTTCCCTGGAGGAAGGGAGTGTGGTGGCACAGTTCAACAC
AATCCTCCAGGCCGGCGCTGCGGCAGATGAGTCTGCAGTAGAAGCAGCAT
TCAAGGAAGGATTGACTAATATCAGTTCAGCTGGCACCGTCAATGGACTC
ACTTTCAACCGGTCGTCTGCTGCTTTCTCAGATGTGAATGAGTGCCTGTC
TACTGTGGATAATGACTGCTCCCCCAACGCTAACTGCACCAACACGGCAG
GGTCCTTCAGCTGTGTGTGTAAAACTGGTTACCTGGACAGTCACACCGCC
ACTCCTGGCAGGACTTGTGTTGGTATGTTTGGTGGAGAATAGTCAGATGT
TGATGAATGTAGTCCCAACCAGTGTGGCAACATCTATGCTGATGTGGAGA
ACAGGGTGTGCAGGAACACTCCTGGCAGTTTCAGTTGTACCTGCAGGCCT
GGCTACACTGATGTGGATGGAACATGCACTGGTTCCAACATTTACACCGG
CAAAGTTACCATAACATCAGCCACCTTCACTACAGACTTCAACAACCTCC
AGCGGGAAACAACACAGGTCTTTGTAGCTCAAGTGGTCATAGCTATCAAT
TCAATCTTCCAGAATAGCAGCCTTGCAAGTGTTTATCTGACTTCAGTTAT
CACTTCCCTGGAGGAAGGGAGTGTGGTGGCACAGTTCAACACAATCCTCC
AGGCCGGCGCTGCGGCAGATGAGTCTGCAGTAGAAGCAGCATTCAAGGAA
GGATTGACTAATATCAGTTCAGCTGGCACCGTCAATGGACTCACTTTCAA
CCGGTCGTCTGCTGCTTTCTCAGATGTGAATGAGTGCCTGTCTACTGTGG
ATAATGACTGCTCCCCCAACGCTAACTGCACCAACACGGCAGGGTCCTTC
AGCTGTGTGTGTAAAACTGGTTACCTGGACAGTCACACCGCCACTCCTGG
CAGGACTTGTGTTGGTATGTTTGGTGGAGAATAGTCAGATGTTGATGAAT
GTAGTCCCAACCAGTGTGGCAACATCTATGCTGATGTGGAGAACAGGGTG
TGCAGGAACACTCCTGGCAGTTTCAGTTGTACCTGCAGGCCTGGCTACAC
TGATGTGGATGGAACATGCACTGGTTCCAACATTTACACCGGCAAAGTTA
CCATAACATCAGCCACCTTCACTACAGACTTCAACAACCTCCAGCGGGAA
ACAACACAGGTCTTTGTAGCTCAAGTGGTCATAGCTATCAATTCAATCTT
CCAGAATAGCAGCCTTGCAAGTGTTTATCTGACTTCAGTTATCACTTCCC
TGGAGGAAGGGAGTGTGGTGGCACAGTTCAACACAATCCTCCAGGCCGGC
GCTGCGGCAGATGAGTCTGCAGTAGAAGCAGCATTCAAGGAAGGATTGAC
TAATATCAGTTCAGCTGGCACCGTCAATGGACTCACTTTCAACCGGTCGT
CTGCTGCTTTCTCAGATGTGAATGAGTGCCTGTCTACTGTGGATAATGAC
TGCTCCCCCAACGCTAACTGCACCAACACGGCAGGGTCCTTCAGCTGTGT
GTGTAAAACTGGTTACCTGGACAGTCACACCGCCACTCCTGGCAGGACTT
GTGTTGGTATGTTTGGTGGAGAATAGTCAGATGTTGATGAATGTAGTCCC
AACCAGTGTGGCAACATCTATGCTGATGTGGAGAACAGGGTGTGCAGGAA
CACTCCTGGCAGTTTCAGTTGTACCTGCAGGCCTGGCTACACTGATGTGG
ATGGAACATGCACTGGTTCCAACATTTACACCGGCAAAGTTACCATAACA
TCAGCCACCTTCACTACAGACTTCAACAACCTCCAGCGGGAAACAACACA
GGTCTTTGTAGCTCAAGTGGTCATAGCTATCAATTCAATCTTCCAGAATA
GCAGCCTTGCAAGTGTTTATCTGACTTCAGTTATCACTTCCCTGGAGGAA
GGGAGTGTGGTGGCACAGTTCAACACAATCCTCCAGGCCGGCGCTGCGGC
AGATGAGTCTGCAGTAGAAGCAGCATTCAAGGAAGGATTGACTAATATCA
GTTCAGCTGGCACCGTCAATGGACTCACTTTCAACCGGTCGTCTGCTGCT
TTCTCAGATGTGAATGAGTGCCTGTCTACTGTGGATAATGACTGCTCCCC
CAACGCTAACTGCACCAACACGGCAGGGTCCTTCAGCTGTGTGTGTAAAA
CTGGTTACCTGGACAGTCACACCGCCACTCCTGGCAGGACTTGTGTTGGT
ATGTTTGGTGGAGAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000448 | genome | Sc0000448:81001..83777 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97140_cuf0 |
| Biotype | protein_coding |
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