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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97135_cuf5 >transcript:BL97135_cuf5-protein ID=transcript:BL97135_cuf5-protein|Name=transcript:BL97135_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=187bp
LFYVQVISAAEAQYMRDMMAQMQELYNKQQGEEWGILCPHEGMVLVAKYE
EDNLWYRAQVVDLPGNKQVDITYVDFGNSARVTCSQLKKIPDRFLKLPIQ
AVPCVLADVEPLDVSKGWSDEARILFNQLALFKSLVVHVKGKTANSRLNV
LLYDSLDKQTCINSLLAEEGHGTYSGQTPIQTTVPLP Run BLAST on NCBI mRNA from alignment at Sc0000040:1565494..1570312+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97135_cuf5 ID=transcript:BL97135_cuf5|Name=transcript:BL97135_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=4819bp|location=Sequence derived from alignment at Sc0000040:1565494..1570312+ (Branchiostoma lanceolatum)
ACCTCTTCTATGTGCAAGTCGTAAGTCACTATTTAACAATCAACCAGGGG
TTATCTTATAAGCACCAGTCCTAAACAGGGATGTCCCAACAGGTCTACTG
GCAATGCCTCAGACCTGGTTCCAATTAGTCAGTAACTGGAAGACCTTGGT
TCAAATCCTTGGACGGGATATCTTGGTTTGGGCTGCACCTGTCTTTAGGA
AAGGACATAAAATGGGGGTCCCGTGTTGGAGGTGGTGCCTCGAGCACGTT
AATGGGGAAGGGCTAGCAACCTCACTCCCTATCAAAATATACCCTGGTAC
TGAAAGTTGAAATAGCAAGGAAATCAGGCACAACAAGGTGAACAACAAAC
AGTCATAAACCCATAACTAGGATTAAAATATTCTTAGAAAAAAGTGAGTG
AGCAAGTGTGCTAGCAAGCAAATGAATGAATGAACAAACGAACAAATAAA
TGAATGAATGAAAAAATAAGAATTATACAAAATGTACCTATTCTATACAC
ATCACCTGTGTTTGACTCATACCTCTACTTTGGCACTGCCTTGTTGTCTG
ACCTGTCCTTTAAGTAGTACTGTCTACTGTGTGATCCTCAGATCAGTGCT
GCAGAGGCTCAGTACATGAGGGACATGATGGCTCAGATGCAGGAGTTGTA
CAATAAACAGCAAGGGGAAGAATGGGGCATCCTATGTCCACATGAAGGTA
TGTACAAACTGTATGGAAAAGATACTCGTTAATTGGTATGATAGAAGGAC
TCATTTTGCAGTGTGGTATACAAATATTATTGTGTAGCTAGTGTGTGAAA
CTTAGAACTAGCTCAATGTTTTCGGTTTTCGCAGTGACCACTTCACCATG
AACTTAAAGCCACTGCAAAAAGGCTTGTACTGTCTTCAGCTTGCCTTAAC
CCCCTTGTTTTAACCGCAAACATAAAATCACTGCGAACATTCCATTTTCT
CCCTACCACAATATTAAATCCCTGCAAACTGACATCTATTTTACAGTATG
TCTAGACAGTGTGTGAAACTTACATGTACAATTAGAATTTCAATGTTTCA
ATTTCATGTATTCCTAAAGAGTCTTGAACATTTCAGACTTGATTTGTACA
TTTTTGTGGTGGTCCTGTCATGTATATATTCCATGTGCATTTCTTCAGGT
ATGGTGCTGGTTGCTAAGTACGAGGAAGACAACCTGTGGTACAGGGCACA
AGTCGTGGGTAAGTCAAACACATGCCCATCTCTATATCTAGTGTGTCAGA
TACAGCCATTTCCATGTCCTGGTTGTCTGATTAGTATTGTCTTTAGTATC
TTGCCATTACCGATATATTGTTTCTGGATATAAGATCATTATTTTGATAA
AATTCTTCACAATTAGCTAAAGACTTACCTTTATGTCAATTAGATAAGAA
AATGGTTTCAACTGAAGCTTTCTATAGAATATGGCAGAAGCCACAACGCT
TTATGATAATTTAAATAATGTATTCATTTGTAAACATTGCTTAACCTAAA
GAGACTCAGTAAAATGATTCTTATTGTGTGTACAGCTCCTGTAATGTTTT
CTGTGTTTCTCAGCCAGGTAACAAGCAGGTAGACATGTTTAGTTTACTCT
TCAATAATTAAAGAGCATAAACTTAGAAAGCCATGTCTCTGTCTTGTCGC
TCTGGTTTGTTCATAAGAAGACCACTTGTCTAAGAAGACCATAGCGCCCC
AGAGTGGTCGTGTAATGCTACGGGCCCATTTCCAATCCGGGATCTGGCCG
GGCTGTTTGCTAAAGTGAAAAATAAAAAATGCATGACTTTGTCAAGAAAA
TGCACAATATATGGTTAGGAGTAATTTTTTTAACGTTTTGTGTCTTTTGT
TGTCTTTTATATCATATTTTTCATTTCCACAAGCTGCCCAGCTGGGCCCC
GGATTAGAGATGGGACCGAAGCATCAGACAAGTTTGACTGTATTTGTTTT
TGTTGGTCAGATCTGCCAGGTAACAAGCAGGTGGACATCACCTATGTGGA
CTTCGGGAACTCCGCCCGAGTCACCTGCTCACAGCTGAAGAAGATCCCAG
ACAGGTTTCTCAAACTTCCCATACAGGTAATTAACTCCTCACTCATTCTG
GGTAGTGTGCTGCGATCGGTAAAGGTTAGGGGTGGATACCGGTATGGCAT
AATAATGTCCAAGTCCAAGTTTAGGTCCAGAGATTTAGGTTCAGGTCCGG
ACCTGAACCTGGACCTGACCAGTTGATGTTTTGTTCAATATCAAGCATAG
AGAATTAATACTGACATGCACGTGCACAACTATAAAAGTTTCTTGGTGAG
AAGACTTTCAAGATAAACGAGTGTTTGATATTTGAATGTTGCACTTGTTT
TAAATGCCTATTTGTCAGAGGGGAGACTCAAAACACTTTTTATCAAACAA
AATAGTATTTGTTCTTTGTTCAGGTGTTTTTGGACTCAGGTTTTTGGCTT
TAGGTTTTTTGGACTTGGTTCTTGGATGTTGTAAATATTTAAGGTCCGAA
TCAGGTCCAGCGAACCGGTATCCACCCCTACAGGTAACTAATGATCACAC
AAAATATATGCAATTACTAATAAGCAGTCATATCTCAGACTGAGGATGAA
GCATGGCCCTTTCTTTATCTTTATGTGGATTCGACACAGCTCACTTTTTG
GCAAAGCACACCAGGTCACCCCTACTCTTCTCGAAAACTGTGTTGTTTCT
TTTACGAGCAGAGGACTGTGCATTGTATTTGTATCCAGGGAGCCTGAAAA
ACAGGTCAAGAGACCTGAGTGTGTCCGCTGGCTAGATAAATAAATGTCGT
TGAATGAATGAATGAAGGTTTGATGCTCGAGGCTCATGGCTCAAAAGCTC
CCTCATACACTGGGCCTGCCAGCTTCATGTTACCATCCAAAATGACAAAT
GCAATCCCTTGCAATTTACATGTCTGCGCTTGATAAAGCATTGTGCTTCA
CCTCAATTGAGGATGACCGCTTTACCTTTACCATATTCTGCTGCAAAAAC
GTGCAACATAATATATACTATGGTTACGAAATGAGCTTGACGGAGCAATT
GATGTGTATGACTGTACATTGTTTCTGTAAATTGTACTTTAAATAGAATA
GAAGACGATTGTTAGTTTGTGGTAGAATACAGATTACCCAAGAAAGAAAT
GAATTGTATAAGCTTGTACAAAACCTATTTCCCTACTACACACATTTAAG
TACTGAACAAAAATTCATATTCCTAATGCGACTAGACAAACCTGCCATTG
AAAAACATGTCTGTTCTTTTATATCTACTATAACCGAAAAGGGAGGAGAA
GTAGAATTTATCCATTGATAGTCATATTCTTTTTGTATCCATGAACTGCA
CTTGTTCTTTTGTTTTGTTCTGACCCGTACTTAGCCAAGTGTGGCAGAAA
TGTGCAATAAAGGTCTTCATTCATTGTTTCACACCTTGTTACTTTAACAT
GTGTTCTCCAGGCTGTGCCCTGTGTTCTGGCAGACGTGGAGCCACTTGAT
GTTTCTAAAGGATGGTCTGATGAGGTCAGGAAATGGGAAAGACTTTTTTA
TAGCAAGTTTTCAATTATCAATTTTGACAAAATGGCTGAGAGATGTATAA
TTTGCTAGTATAAAACACCACTGTCCAACTATAGTACATTGTAAATACAT
TTTACACTGACACCAAAATTTATGTTATACACAAATGTAGGAATTTCTTT
CATTGGTGTAATGATATTTTGACACAAGATACTTAGAAAGTCAGGTCTAA
GAAAAAATGATAATTGTGTTTACGGTTACACAACCAACACAAGCAAAATT
TGGCAACTCTAGCCTTTTTTGACTGCTAGGAAGGGACATAAAACTTTTGA
TCTGCATTTCAATGGACCATAGCTCAATCAACTGTTACCTTGCATATCTA
ATATTTCCTGGATGTCAGACCTTTATCGACGTATGAAGCTGTTCCACCTA
TTATGTACAACGTTGAAGAGATTCATCAGTCATGTGTAATAACAGTTACA
AGAATACATTATGTACAACTCTTTTCCCAGGCACGTATCCTGTTCAACCA
GCTGGCCCTGTTTAAGAGCCTGGTGGTGCACGTGAAGGGGAAGACGGCCA
ACTCCAGGCTGAACGTTTTGCTGTACGACTCGCTCGACAAACAGACCTGC
ATCAACAGTCTGCTGGCAGAGGAGGGGCATGGAACTTACAGTGGGCAGAC
TCCGTAAGTCTGTTTGTTTTTTTGTTTTTTTTTGTATGGCATACCCGATG
CCTCATGACGTAACACACGTTTGTACTGAAGAGTAGAAGCTACATATCCA
AACAGATTTGTTTGATCCACTTACACTCAGAAGGACCCCTACTCATTTAA
TTTTTGTTTCGTGTGGTGGGTTCTTATCAACTGTCTGCAGAGGAGGGGCA
CGGAACCTATGCTGGACAGGCTTCGTAAGTTTGTATGTTTACATTGCATA
CCCGATAAACTGCCTCATGGCATAACACACCAGGTTTGTACTGAAGTGCA
CAAGCTGCATATCCGGACAGATTTCTTTGATCCACTCACACTCACACTGA
GAAGGACCCCTACTCTTTTAATTTTTGTTTCTTGTGATGGGTTCTTATCA
ACAGTCTGCTGGCAGAGGAAGGGCACGGAACCTACACTGGACAGGCTCCA
TAAGTTAGATCTGTGAATACGCCAAAAAACAGTAACTCTAGCAATGTGAT
AAGATTTTGAGTACAAATTAGGATTTTACCATGTTGACTGAAGGGGACCA
TATAGTGAAGACTTGCACCCCTGACATGTGTAATGTTGTCCAGGATACAA
ACAACAGTACCGCTTCCAG Coding sequence (CDS) from alignment at Sc0000040:1565494..1570312+ >transcript:BL97135_cuf5 ID=transcript:BL97135_cuf5|Name=transcript:BL97135_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=3927bp|location=Sequence derived from alignment at Sc0000040:1565494..1570312+ (Branchiostoma lanceolatum)
CTCTTCTATGTGCAAGTCATCAGTGCTGCAGAGGCTCAGTACATGAGGGA
CATGATGGCTCAGATGCAGGAGTTGTACAATAAACAGCAAGGGGAAGAAT
GGGGCATCCTATGTCCACATGAAGGTATGGTGCTGGTTGCTAAGTACGAG
GAAGACAACCTGTGGTACAGGGCACAAGTCGTGGATCTGCCAGGTAACAA
GCAGGTGGACATCACCTATGTGGACTTCGGGAACTCCGCCCGAGTCACCT
GCTCACAGCTGAAGAAGATCCCAGACAGGTTTCTCAAACTTCCCATACAG
GCTGTGCCCTGTGTTCTGGCAGACGTGGAGCCACTTGATGTTTCTAAAGG
ATGGTCTGATGAGGCACGTATCCTGTTCAACCAGCTGGCCCTGTTTAAGA
GCCTGGTGGTGCACGTGAAGGGGAAGACGGCCAACTCCAGGCTGAACGTT
TTGCTGTACGACTCGCTCGACAAACAGACCTGCATCAACAGTCTGCTGGC
AGAGGAGGGGCATGGAACTTACAGTGGGCAGACTCCGATACAAACAACAG
TACCGCTTCCACTCTTCTATGTGCAAGTCATCAGTGCTGCAGAGGCTCAG
TACATGAGGGACATGATGGCTCAGATGCAGGAGTTGTACAATAAACAGCA
AGGGGAAGAATGGGGCATCCTATGTCCACATGAAGGTATGGTGCTGGTTG
CTAAGTACGAGGAAGACAACCTGTGGTACAGGGCACAAGTCGTGGATCTG
CCAGGTAACAAGCAGGTGGACATCACCTATGTGGACTTCGGGAACTCCGC
CCGAGTCACCTGCTCACAGCTGAAGAAGATCCCAGACAGGTTTCTCAAAC
TTCCCATACAGGCTGTGCCCTGTGTTCTGGCAGACGTGGAGCCACTTGAT
GTTTCTAAAGGATGGTCTGATGAGGCACGTATCCTGTTCAACCAGCTGGC
CCTGTTTAAGAGCCTGGTGGTGCACGTGAAGGGGAAGACGGCCAACTCCA
GGCTGAACGTTTTGCTGTACGACTCGCTCGACAAACAGACCTGCATCAAC
AGTCTGCTGGCAGAGGAGGGGCATGGAACTTACAGTGGGCAGACTCCGAT
ACAAACAACAGTACCGCTTCCACTCTTCTATGTGCAAGTCATCAGTGCTG
CAGAGGCTCAGTACATGAGGGACATGATGGCTCAGATGCAGGAGTTGTAC
AATAAACAGCAAGGGGAAGAATGGGGCATCCTATGTCCACATGAAGGTAT
GGTGCTGGTTGCTAAGTACGAGGAAGACAACCTGTGGTACAGGGCACAAG
TCGTGGATCTGCCAGGTAACAAGCAGGTGGACATCACCTATGTGGACTTC
GGGAACTCCGCCCGAGTCACCTGCTCACAGCTGAAGAAGATCCCAGACAG
GTTTCTCAAACTTCCCATACAGGCTGTGCCCTGTGTTCTGGCAGACGTGG
AGCCACTTGATGTTTCTAAAGGATGGTCTGATGAGGCACGTATCCTGTTC
AACCAGCTGGCCCTGTTTAAGAGCCTGGTGGTGCACGTGAAGGGGAAGAC
GGCCAACTCCAGGCTGAACGTTTTGCTGTACGACTCGCTCGACAAACAGA
CCTGCATCAACAGTCTGCTGGCAGAGGAGGGGCATGGAACTTACAGTGGG
CAGACTCCGATACAAACAACAGTACCGCTTCCACTCTTCTATGTGCAAGT
CATCAGTGCTGCAGAGGCTCAGTACATGAGGGACATGATGGCTCAGATGC
AGGAGTTGTACAATAAACAGCAAGGGGAAGAATGGGGCATCCTATGTCCA
CATGAAGGTATGGTGCTGGTTGCTAAGTACGAGGAAGACAACCTGTGGTA
CAGGGCACAAGTCGTGGATCTGCCAGGTAACAAGCAGGTGGACATCACCT
ATGTGGACTTCGGGAACTCCGCCCGAGTCACCTGCTCACAGCTGAAGAAG
ATCCCAGACAGGTTTCTCAAACTTCCCATACAGGCTGTGCCCTGTGTTCT
GGCAGACGTGGAGCCACTTGATGTTTCTAAAGGATGGTCTGATGAGGCAC
GTATCCTGTTCAACCAGCTGGCCCTGTTTAAGAGCCTGGTGGTGCACGTG
AAGGGGAAGACGGCCAACTCCAGGCTGAACGTTTTGCTGTACGACTCGCT
CGACAAACAGACCTGCATCAACAGTCTGCTGGCAGAGGAGGGGCATGGAA
CTTACAGTGGGCAGACTCCGATACAAACAACAGTACCGCTTCCACTCTTC
TATGTGCAAGTCATCAGTGCTGCAGAGGCTCAGTACATGAGGGACATGAT
GGCTCAGATGCAGGAGTTGTACAATAAACAGCAAGGGGAAGAATGGGGCA
TCCTATGTCCACATGAAGGTATGGTGCTGGTTGCTAAGTACGAGGAAGAC
AACCTGTGGTACAGGGCACAAGTCGTGGATCTGCCAGGTAACAAGCAGGT
GGACATCACCTATGTGGACTTCGGGAACTCCGCCCGAGTCACCTGCTCAC
AGCTGAAGAAGATCCCAGACAGGTTTCTCAAACTTCCCATACAGGCTGTG
CCCTGTGTTCTGGCAGACGTGGAGCCACTTGATGTTTCTAAAGGATGGTC
TGATGAGGCACGTATCCTGTTCAACCAGCTGGCCCTGTTTAAGAGCCTGG
TGGTGCACGTGAAGGGGAAGACGGCCAACTCCAGGCTGAACGTTTTGCTG
TACGACTCGCTCGACAAACAGACCTGCATCAACAGTCTGCTGGCAGAGGA
GGGGCATGGAACTTACAGTGGGCAGACTCCGATACAAACAACAGTACCGC
TTCCACTCTTCTATGTGCAAGTCATCAGTGCTGCAGAGGCTCAGTACATG
AGGGACATGATGGCTCAGATGCAGGAGTTGTACAATAAACAGCAAGGGGA
AGAATGGGGCATCCTATGTCCACATGAAGGTATGGTGCTGGTTGCTAAGT
ACGAGGAAGACAACCTGTGGTACAGGGCACAAGTCGTGGATCTGCCAGGT
AACAAGCAGGTGGACATCACCTATGTGGACTTCGGGAACTCCGCCCGAGT
CACCTGCTCACAGCTGAAGAAGATCCCAGACAGGTTTCTCAAACTTCCCA
TACAGGCTGTGCCCTGTGTTCTGGCAGACGTGGAGCCACTTGATGTTTCT
AAAGGATGGTCTGATGAGGCACGTATCCTGTTCAACCAGCTGGCCCTGTT
TAAGAGCCTGGTGGTGCACGTGAAGGGGAAGACGGCCAACTCCAGGCTGA
ACGTTTTGCTGTACGACTCGCTCGACAAACAGACCTGCATCAACAGTCTG
CTGGCAGAGGAGGGGCATGGAACTTACAGTGGGCAGACTCCGATACAAAC
AACAGTACCGCTTCCACTCTTCTATGTGCAAGTCATCAGTGCTGCAGAGG
CTCAGTACATGAGGGACATGATGGCTCAGATGCAGGAGTTGTACAATAAA
CAGCAAGGGGAAGAATGGGGCATCCTATGTCCACATGAAGGTATGGTGCT
GGTTGCTAAGTACGAGGAAGACAACCTGTGGTACAGGGCACAAGTCGTGG
ATCTGCCAGGTAACAAGCAGGTGGACATCACCTATGTGGACTTCGGGAAC
TCCGCCCGAGTCACCTGCTCACAGCTGAAGAAGATCCCAGACAGGTTTCT
CAAACTTCCCATACAGGCTGTGCCCTGTGTTCTGGCAGACGTGGAGCCAC
TTGATGTTTCTAAAGGATGGTCTGATGAGGCACGTATCCTGTTCAACCAG
CTGGCCCTGTTTAAGAGCCTGGTGGTGCACGTGAAGGGGAAGACGGCCAA
CTCCAGGCTGAACGTTTTGCTGTACGACTCGCTCGACAAACAGACCTGCA
TCAACAGTCTGCTGGCAGAGGAGGGGCATGGAACTTACAGTGGGCAGACT
CCGATACAAACAACAGTACCGCTTCCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000040 | genome | Sc0000040:1565494..1570312 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97135_cuf5 |
| Biotype | protein_coding |
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