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transcript:BL97134_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97134_cuf3
Unique Nametranscript:BL97134_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97134_cuf3

>transcript:BL97134_cuf3-protein ID=transcript:BL97134_cuf3-protein|Name=transcript:BL97134_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=222bp
SSVDRFGSQDSSQGGEDTSSKDSSPKQKRKQRVRTSWKPSRWELVFVTHI
KHPCHFLVQRLSDNDRVDAMMKAINRFCNGQEPEHVNLDSMAVGDLCLAQ
YSFDHKWYRGRIRTVSGGASDESSDSGADKKEPMVEVAYVDYGNSELVPV
RRLRKMPQRFQTIPEMSMCCSLVDIVPIDKGNRKVVPGSHTSLRKDGWGQ
ASSPEDPESLRKSTVCRSTQAT
Run BLAST on NCBI

mRNA from alignment at Sc0000040:1559542..1564059+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97134_cuf3 ID=transcript:BL97134_cuf3|Name=transcript:BL97134_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=4518bp|location=Sequence derived from alignment at Sc0000040:1559542..1564059+ (Branchiostoma lanceolatum)
CAGCTCGGTGGACAGGTTTGGGTCCCAGGACTCCAGTCAGGGAGGGGAGG ACACCTCCAGTAAGGACAGCAGCCCCAAACAGAAGAGGAAACAGAGAGTC AGGACCAGCTGGAAACCAAGTATAACATTTTCCAATCTCCTGCTGTAGAT CTGACATTGTTAGATTAGCTTAGAAACGTCTGACCGTTTCCAAAATCATA TCCAGTTGCTTGAGTAACAGCTATTTGGTAAATCTTTTACCTGGATGTCT AATTTTCATTGATGTTAGATTAGCTTACTTAGCTATTTAGTTTATGAATA AAGTTTTATCACTTCAAAATATTTCTATCAATAGAAGGGAAAGAAGGGAA TATTAAATCTCTTTTTGCTTTTATGATGACCTCTAGCTAAAGTTTAAATG AGAACCATTAAGAAATAGATTGGCCTTATTGTGAGATTTGTAAACCTTAT CACTTGTACAGGTCGCTGGGAGCTTGTTTTTGTGACCCACATCAAACACC CGTGCCACTTCCTGGTGCAGCGACTGTCAGACAACGATCGAGTCGACGCC ATGATGAAGGCCATCAACAGGTTCTGTAACGGTCAGGAGCCTGAACATGT CAACTTGGACAGCATGGCAGTGGGTAGGGGCATTTCCTGCACTTGTGTGT GTGTGAAGATGTGTGTGTGAAGATGTGTGTGTGAAGATGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGATGTGTGTGCGTGTACAT GTGCGTGGATGCCATGATAAAGGCCACACAGGCCACGCAAACAAGGTCGA AGTGAACAGTTACTGACTGAATCCAAGGGGTCATCGTCTTTATTTGAATA TAATCAACTCTTCAGATTCTGAAGTTTTGTGTTAGGTCTACATGGCATAT AGTATAATAGATCATAAGTAGAATTTCTACATGCTATTCCACTCCAGGTG ACCTGTGCCTTGCACAGTACAGCTTTGACCACAAGTGGTACCGAGGTCGG ATCAGGACAGTCTCGGGAGGAGCCTCCGACGAATCCTCGGACAGCGGGGC AGACAAGAAAGAACCCATGGTGGAGGTGGCTTATGTAGACTACGGAAACT CAGAACTTGTACCCGTCAGAAGGTAATTTAAAGAAAACATTCTTAAGAGA CTCAGATAGGGTTTATACTCCCTATAAATTTCAAAGAGGATGATATTATA GTGGCATGTTTTCAGTAACTGTAAGAAATGTTGTGACCTTGAAAACCTTT CTTTTGTCAATGTTTTTACAAAATTACCTTATTTATTGTTTATCACTGAT TGTAGAAGATTCGTTATTAACAAGAATTTATTATTAGTATTACTGTAACA GTATAATTATTATTGTGTAATGAGAGTTCACATTTTTGACATGGAACATA TTGTATGCCAACGTAATTATAAGGCTGCACCAAGTAATTTTTATGGATGA CGTCCTTTGGAGACCCTAAATCTAATGCGAGAGCGCGAAAAAAACACAAG AAGGGCCGAAAAAAACAAGATGCCTAGATTAGAAATATAATAGTCAACGA CGCATGTTAGGACACACATTGAATGAGAGAACACAGTGTAACAACTAACA ATTCTTTTATTCATCAGGAAAACAGCAACAATTTGAATGAATCATTTGAA GTTGAACAGCAGTTGTTGTACTGTTCTGTTTCTTTCCATATCCCATTAAT TTTGCAGGCCTGCAGAAACATAGTATATTAAAAATGAACTCTTTGGTCAT AGTTACAGGCAGCAAATTTTTTTTTTCTGGGAACAGACCAAAATCAATGC GTGCGCGGACGTCATCCATAAAAATTACTTGGTGTAGCCTAATACATATA CCTGGGTCTTCTTGATAAGAGGGAGATGTAATGTATCAGCTTGTTAGTAA ACTTTCCATACCTTTTACTCCAGGCTGAGGAAGATGCCGCAGAGGTTCCA GACTATTCCTGAGATGTCCATGTGCTGTTCTCTGGTGGACATAGTCCCTA TAGATAAGGTATGATCATTATTAGACCAGTATGTCTTGTGTCTCTTTGGA AAACGGCGCATTATCATACACCAAATACCAGTTACTCACAAACAACTGGA TAGATGATCAGATGTTTCAGTTGCATCCACTACCTTTTGTCAGTGACACT TGTATCTTTAGTTATGACCTGGATGTCCAACCTCCTTTGACAATACCTAT CATATACCTTACAGTTCTTTTGATTTAATGCGTAGCATGAAAAAAACTAA CTTTGAATGTTCTGATCACGAACTCTCACCCTAGTAATAACATTACGGTT CAGTTCTTGAACATCAGACAATAGACATCTTAGCATTAGTGCATGCCCTG TACCATTATGTAATGCCTCACTACAGGAAACAGGAAAGTGGTCCCAGGAA GCCATACAAGCCTTCGCAAAGATGGTTGGGGACAAGCCAGTTCTCCTGAA GGTGGGTTGCACTTTCTTTGGGTTGTTGCCTTATTATTCAAATCTGAAGG TTCTGAGTTTTAATCCCTGGCCTGAAGCCTCAACGTTGTGCCCTTGGTAA GATGTAATGTACACAAAACACCAAATCCTATTTCATCTCTTGACTCAGAT TGAAATGAGACCCCTAGCTTTTGTTAAGTTTTGGGACGTAAAGCAGTAGG TCCCGTGTTTGAGGAGAGCCATGCATGAGCAGTATAAAAAATACGCCATT CTTAAATGTATCAATGAATTATACATGTACAAGGTTCCCTCCTGGTGTGA GTGGATCAAACATGTTTTTTTACCTTCTCCTAAGTGCTGCCTAACTCTGT AACAAATAGGGAATTGCGTGCCAAATGGATTCTTCAGTGTGCTAAAGGTT AAACCTTTACACAAGTTACAGTCTGGGTTCATGGTTGACATCAGCTGTTA TATATATTTGTAATGTCAATCTTTCTTCCAATTCAGGAATTTTTGAAGAC AGTTAATGTTATTATTCCAGATCCTGAATCATTTCAGAAGTCTACTTACA AAATGTGGTAAATATCTGATTCAGTAATTATTGAAAAACTCTCTCTCTCT CTTTCCCCCTCTAATCCATTTTAACACATTTTATTTCCCATCATATGGGG GTTGGACGTGCTTGCACATGGATGGGGGAGCCCCAGAACTCCTCATCAAG TGCAAGTCTTTTTTGTAGCAAGAGTTTTTACGGCTGGATGCCCTTCCTAA CGCCAACCCAAACCCTACTGTAGGGCATAGGACTATTAATCTTTTATCAT GTGTAATATTATTCCAGATCCAGAATCACTCCGGAAGTCTACTGTATGTA GATCTACACAAGCCACCTAATGAAGACATAGACACGGACATGCCTGTGTC TCTCCGTGATGCCCTGGTGTTCCTGGAGGTGGCCTACCTCAGGTCCCCAC ACTCCGTACCATCCTTTACTGGTAAGATCTCTCTCTCTCTCTCTCTATCC AACTTAACGTCTTTTGTTCCCCATCATCTGGGGGTTGGACGTGCTTGCAC ATGGATGGGAAAGCCCCAGAACTCCTCATCAAGTGCAAGTCCTTTTTTGT AGCAAGAGTTTTTACGACTGGATGCCCTTCCTAACGCCAACCCAAACCCT ACTGCTGGGCTTAGGACATGGGAAATGTGTGTTAAGTGCCTTTCCCAAGG GCACAACGTTGCGTGCATGTCCGGACATGTCTGGGTACTCCACTGGGGAT TGAACCTGGGTCTTATTGGTTCATAGCCGGATGCTGTGCCACTGTGCTAC ACAGACGCCAGATGTCCGTTAAATACAAATTGTGAAGTCTCTGTCTGCCC TCTAGAACTTGGAAGAATCCCTTCAATCTGATAAATGATTGATCTTTTGA AGATGCACTCAGGCAAAAGCAGCAGACAAAGGATATAGTCACTGTTAATT TGTGATTGATGCCTGTGTACCTCAACTGGTAGCACCCTCACAGTTGATCA AGAGCTTTGCTAACTGGTAAACCCTGGTTCAATCCCGTGAATTCTCAGTT ATGGCTGCACCTGTCTTTATACAGACAGTGTGAAAGATTGGGCCTGGCAT ACAATTTATGCTAGTAGGTCCTTACCTTAGATGATGTTGTTAACATTTCA ATATATTTCATCAAGACTAAAAGCCATTTTCAGTGGGGTCGTGTGGCGTA ACGGCAGGGTTTTCGGCCCAGAACCCAGCGGTTGTTTGAATCCCCTAGGC CAGATGCCACCCATCTTGTGCGCTTGGGAAAAAGGCACTTTGCACATCAA CTTTCCTCACTCCACCAAAGTGTGTAAAAACGGGTATATTATGTGTGGGT CACGACACCAGCAGTAGCTGCCTTTGTCTCACGTGTATCGCACTATTGCA ATTCTGATAAAATCAAATCAATAAATACATATGGCTGTTGTGATCCTGTT CCAGCATCTGTTCTGCAGCCCAGAAGGAAGTTCCTGCCAGCCGAACCCCT GCTCCAGGGGCAGGACATCCCCGTGTTGGGCAGCCATGTCGCAGGGCCAG ACCTCTTCTATGTACAAG

Coding sequence (CDS) from alignment at Sc0000040:1559542..1564059+

>transcript:BL97134_cuf3 ID=transcript:BL97134_cuf3|Name=transcript:BL97134_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=4014bp|location=Sequence derived from alignment at Sc0000040:1559542..1564059+ (Branchiostoma lanceolatum)
AGCTCGGTGGACAGGTTTGGGTCCCAGGACTCCAGTCAGGGAGGGGAGGA
CACCTCCAGTAAGGACAGCAGCCCCAAACAGAAGAGGAAACAGAGAGTCA
GGACCAGCTGGAAACCAAGTCGCTGGGAGCTTGTTTTTGTGACCCACATC
AAACACCCGTGCCACTTCCTGGTGCAGCGACTGTCAGACAACGATCGAGT
CGACGCCATGATGAAGGCCATCAACAGGTTCTGTAACGGTCAGGAGCCTG
AACATGTCAACTTGGACAGCATGGCAGTGGGTGACCTGTGCCTTGCACAG
TACAGCTTTGACCACAAGTGGTACCGAGGTCGGATCAGGACAGTCTCGGG
AGGAGCCTCCGACGAATCCTCGGACAGCGGGGCAGACAAGAAAGAACCCA
TGGTGGAGGTGGCTTATGTAGACTACGGAAACTCAGAACTTGTACCCGTC
AGAAGGCTGAGGAAGATGCCGCAGAGGTTCCAGACTATTCCTGAGATGTC
CATGTGCTGTTCTCTGGTGGACATAGTCCCTATAGATAAGGGAAACAGGA
AAGTGGTCCCAGGAAGCCATACAAGCCTTCGCAAAGATGGTTGGGGACAA
GCCAGTTCTCCTGAAGATCCAGAATCACTCCGGAAGTCTACTGTATGTAG
ATCTACACAAGCCACCTAAAGCTCGGTGGACAGGTTTGGGTCCCAGGACT
CCAGTCAGGGAGGGGAGGACACCTCCAGTAAGGACAGCAGCCCCAAACAG
AAGAGGAAACAGAGAGTCAGGACCAGCTGGAAACCAAGTCGCTGGGAGCT
TGTTTTTGTGACCCACATCAAACACCCGTGCCACTTCCTGGTGCAGCGAC
TGTCAGACAACGATCGAGTCGACGCCATGATGAAGGCCATCAACAGGTTC
TGTAACGGTCAGGAGCCTGAACATGTCAACTTGGACAGCATGGCAGTGGG
TGACCTGTGCCTTGCACAGTACAGCTTTGACCACAAGTGGTACCGAGGTC
GGATCAGGACAGTCTCGGGAGGAGCCTCCGACGAATCCTCGGACAGCGGG
GCAGACAAGAAAGAACCCATGGTGGAGGTGGCTTATGTAGACTACGGAAA
CTCAGAACTTGTACCCGTCAGAAGGCTGAGGAAGATGCCGCAGAGGTTCC
AGACTATTCCTGAGATGTCCATGTGCTGTTCTCTGGTGGACATAGTCCCT
ATAGATAAGGGAAACAGGAAAGTGGTCCCAGGAAGCCATACAAGCCTTCG
CAAAGATGGTTGGGGACAAGCCAGTTCTCCTGAAGATCCAGAATCACTCC
GGAAGTCTACTGTATGTAGATCTACACAAGCCACCTAAAGCTCGGTGGAC
AGGTTTGGGTCCCAGGACTCCAGTCAGGGAGGGGAGGACACCTCCAGTAA
GGACAGCAGCCCCAAACAGAAGAGGAAACAGAGAGTCAGGACCAGCTGGA
AACCAAGTCGCTGGGAGCTTGTTTTTGTGACCCACATCAAACACCCGTGC
CACTTCCTGGTGCAGCGACTGTCAGACAACGATCGAGTCGACGCCATGAT
GAAGGCCATCAACAGGTTCTGTAACGGTCAGGAGCCTGAACATGTCAACT
TGGACAGCATGGCAGTGGGTGACCTGTGCCTTGCACAGTACAGCTTTGAC
CACAAGTGGTACCGAGGTCGGATCAGGACAGTCTCGGGAGGAGCCTCCGA
CGAATCCTCGGACAGCGGGGCAGACAAGAAAGAACCCATGGTGGAGGTGG
CTTATGTAGACTACGGAAACTCAGAACTTGTACCCGTCAGAAGGCTGAGG
AAGATGCCGCAGAGGTTCCAGACTATTCCTGAGATGTCCATGTGCTGTTC
TCTGGTGGACATAGTCCCTATAGATAAGGGAAACAGGAAAGTGGTCCCAG
GAAGCCATACAAGCCTTCGCAAAGATGGTTGGGGACAAGCCAGTTCTCCT
GAAGATCCAGAATCACTCCGGAAGTCTACTGTATGTAGATCTACACAAGC
CACCTAAAGCTCGGTGGACAGGTTTGGGTCCCAGGACTCCAGTCAGGGAG
GGGAGGACACCTCCAGTAAGGACAGCAGCCCCAAACAGAAGAGGAAACAG
AGAGTCAGGACCAGCTGGAAACCAAGTCGCTGGGAGCTTGTTTTTGTGAC
CCACATCAAACACCCGTGCCACTTCCTGGTGCAGCGACTGTCAGACAACG
ATCGAGTCGACGCCATGATGAAGGCCATCAACAGGTTCTGTAACGGTCAG
GAGCCTGAACATGTCAACTTGGACAGCATGGCAGTGGGTGACCTGTGCCT
TGCACAGTACAGCTTTGACCACAAGTGGTACCGAGGTCGGATCAGGACAG
TCTCGGGAGGAGCCTCCGACGAATCCTCGGACAGCGGGGCAGACAAGAAA
GAACCCATGGTGGAGGTGGCTTATGTAGACTACGGAAACTCAGAACTTGT
ACCCGTCAGAAGGCTGAGGAAGATGCCGCAGAGGTTCCAGACTATTCCTG
AGATGTCCATGTGCTGTTCTCTGGTGGACATAGTCCCTATAGATAAGGGA
AACAGGAAAGTGGTCCCAGGAAGCCATACAAGCCTTCGCAAAGATGGTTG
GGGACAAGCCAGTTCTCCTGAAGATCCAGAATCACTCCGGAAGTCTACTG
TATGTAGATCTACACAAGCCACCTAAAGCTCGGTGGACAGGTTTGGGTCC
CAGGACTCCAGTCAGGGAGGGGAGGACACCTCCAGTAAGGACAGCAGCCC
CAAACAGAAGAGGAAACAGAGAGTCAGGACCAGCTGGAAACCAAGTCGCT
GGGAGCTTGTTTTTGTGACCCACATCAAACACCCGTGCCACTTCCTGGTG
CAGCGACTGTCAGACAACGATCGAGTCGACGCCATGATGAAGGCCATCAA
CAGGTTCTGTAACGGTCAGGAGCCTGAACATGTCAACTTGGACAGCATGG
CAGTGGGTGACCTGTGCCTTGCACAGTACAGCTTTGACCACAAGTGGTAC
CGAGGTCGGATCAGGACAGTCTCGGGAGGAGCCTCCGACGAATCCTCGGA
CAGCGGGGCAGACAAGAAAGAACCCATGGTGGAGGTGGCTTATGTAGACT
ACGGAAACTCAGAACTTGTACCCGTCAGAAGGCTGAGGAAGATGCCGCAG
AGGTTCCAGACTATTCCTGAGATGTCCATGTGCTGTTCTCTGGTGGACAT
AGTCCCTATAGATAAGGGAAACAGGAAAGTGGTCCCAGGAAGCCATACAA
GCCTTCGCAAAGATGGTTGGGGACAAGCCAGTTCTCCTGAAGATCCAGAA
TCACTCCGGAAGTCTACTGTATGTAGATCTACACAAGCCACCTAAAGCTC
GGTGGACAGGTTTGGGTCCCAGGACTCCAGTCAGGGAGGGGAGGACACCT
CCAGTAAGGACAGCAGCCCCAAACAGAAGAGGAAACAGAGAGTCAGGACC
AGCTGGAAACCAAGTCGCTGGGAGCTTGTTTTTGTGACCCACATCAAACA
CCCGTGCCACTTCCTGGTGCAGCGACTGTCAGACAACGATCGAGTCGACG
CCATGATGAAGGCCATCAACAGGTTCTGTAACGGTCAGGAGCCTGAACAT
GTCAACTTGGACAGCATGGCAGTGGGTGACCTGTGCCTTGCACAGTACAG
CTTTGACCACAAGTGGTACCGAGGTCGGATCAGGACAGTCTCGGGAGGAG
CCTCCGACGAATCCTCGGACAGCGGGGCAGACAAGAAAGAACCCATGGTG
GAGGTGGCTTATGTAGACTACGGAAACTCAGAACTTGTACCCGTCAGAAG
GCTGAGGAAGATGCCGCAGAGGTTCCAGACTATTCCTGAGATGTCCATGT
GCTGTTCTCTGGTGGACATAGTCCCTATAGATAAGGGAAACAGGAAAGTG
GTCCCAGGAAGCCATACAAGCCTTCGCAAAGATGGTTGGGGACAAGCCAG
TTCTCCTGAAGATCCAGAATCACTCCGGAAGTCTACTGTATGTAGATCTA
CACAAGCCACCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97134gene:BL97134Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97134_cuf3transcript:BL97134_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97134_cuf3-E1BL97134_cuf3-E1-1564476830-204109Branchiostoma lanceolatumexon
BL97134_cuf3-E2BL97134_cuf3-E2-1564476830-204111Branchiostoma lanceolatumexon
BL97134_cuf3-E3BL97134_cuf3-E3-1564476830-204113Branchiostoma lanceolatumexon
BL97134_cuf3-E4BL97134_cuf3-E4-1564476830-204115Branchiostoma lanceolatumexon
BL97134_cuf3-E5BL97134_cuf3-E5-1564476830-204117Branchiostoma lanceolatumexon
BL97134_cuf3-E6BL97134_cuf3-E6-1564476830-204120Branchiostoma lanceolatumexon
BL97134_cuf3-E7BL97134_cuf3-E7-1564476830-204122Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000040genomeSc0000040:1559542..1564059 +
Properties
Property NameValue
Transcript idBL97134_cuf3
Biotypeprotein_coding