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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97134_cuf3 >transcript:BL97134_cuf3-protein ID=transcript:BL97134_cuf3-protein|Name=transcript:BL97134_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=222bp
SSVDRFGSQDSSQGGEDTSSKDSSPKQKRKQRVRTSWKPSRWELVFVTHI
KHPCHFLVQRLSDNDRVDAMMKAINRFCNGQEPEHVNLDSMAVGDLCLAQ
YSFDHKWYRGRIRTVSGGASDESSDSGADKKEPMVEVAYVDYGNSELVPV
RRLRKMPQRFQTIPEMSMCCSLVDIVPIDKGNRKVVPGSHTSLRKDGWGQ
ASSPEDPESLRKSTVCRSTQAT Run BLAST on NCBI mRNA from alignment at Sc0000040:1559542..1564059+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97134_cuf3 ID=transcript:BL97134_cuf3|Name=transcript:BL97134_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=4518bp|location=Sequence derived from alignment at Sc0000040:1559542..1564059+ (Branchiostoma lanceolatum)
CAGCTCGGTGGACAGGTTTGGGTCCCAGGACTCCAGTCAGGGAGGGGAGG
ACACCTCCAGTAAGGACAGCAGCCCCAAACAGAAGAGGAAACAGAGAGTC
AGGACCAGCTGGAAACCAAGTATAACATTTTCCAATCTCCTGCTGTAGAT
CTGACATTGTTAGATTAGCTTAGAAACGTCTGACCGTTTCCAAAATCATA
TCCAGTTGCTTGAGTAACAGCTATTTGGTAAATCTTTTACCTGGATGTCT
AATTTTCATTGATGTTAGATTAGCTTACTTAGCTATTTAGTTTATGAATA
AAGTTTTATCACTTCAAAATATTTCTATCAATAGAAGGGAAAGAAGGGAA
TATTAAATCTCTTTTTGCTTTTATGATGACCTCTAGCTAAAGTTTAAATG
AGAACCATTAAGAAATAGATTGGCCTTATTGTGAGATTTGTAAACCTTAT
CACTTGTACAGGTCGCTGGGAGCTTGTTTTTGTGACCCACATCAAACACC
CGTGCCACTTCCTGGTGCAGCGACTGTCAGACAACGATCGAGTCGACGCC
ATGATGAAGGCCATCAACAGGTTCTGTAACGGTCAGGAGCCTGAACATGT
CAACTTGGACAGCATGGCAGTGGGTAGGGGCATTTCCTGCACTTGTGTGT
GTGTGAAGATGTGTGTGTGAAGATGTGTGTGTGAAGATGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGATGTGTGTGCGTGTACAT
GTGCGTGGATGCCATGATAAAGGCCACACAGGCCACGCAAACAAGGTCGA
AGTGAACAGTTACTGACTGAATCCAAGGGGTCATCGTCTTTATTTGAATA
TAATCAACTCTTCAGATTCTGAAGTTTTGTGTTAGGTCTACATGGCATAT
AGTATAATAGATCATAAGTAGAATTTCTACATGCTATTCCACTCCAGGTG
ACCTGTGCCTTGCACAGTACAGCTTTGACCACAAGTGGTACCGAGGTCGG
ATCAGGACAGTCTCGGGAGGAGCCTCCGACGAATCCTCGGACAGCGGGGC
AGACAAGAAAGAACCCATGGTGGAGGTGGCTTATGTAGACTACGGAAACT
CAGAACTTGTACCCGTCAGAAGGTAATTTAAAGAAAACATTCTTAAGAGA
CTCAGATAGGGTTTATACTCCCTATAAATTTCAAAGAGGATGATATTATA
GTGGCATGTTTTCAGTAACTGTAAGAAATGTTGTGACCTTGAAAACCTTT
CTTTTGTCAATGTTTTTACAAAATTACCTTATTTATTGTTTATCACTGAT
TGTAGAAGATTCGTTATTAACAAGAATTTATTATTAGTATTACTGTAACA
GTATAATTATTATTGTGTAATGAGAGTTCACATTTTTGACATGGAACATA
TTGTATGCCAACGTAATTATAAGGCTGCACCAAGTAATTTTTATGGATGA
CGTCCTTTGGAGACCCTAAATCTAATGCGAGAGCGCGAAAAAAACACAAG
AAGGGCCGAAAAAAACAAGATGCCTAGATTAGAAATATAATAGTCAACGA
CGCATGTTAGGACACACATTGAATGAGAGAACACAGTGTAACAACTAACA
ATTCTTTTATTCATCAGGAAAACAGCAACAATTTGAATGAATCATTTGAA
GTTGAACAGCAGTTGTTGTACTGTTCTGTTTCTTTCCATATCCCATTAAT
TTTGCAGGCCTGCAGAAACATAGTATATTAAAAATGAACTCTTTGGTCAT
AGTTACAGGCAGCAAATTTTTTTTTTCTGGGAACAGACCAAAATCAATGC
GTGCGCGGACGTCATCCATAAAAATTACTTGGTGTAGCCTAATACATATA
CCTGGGTCTTCTTGATAAGAGGGAGATGTAATGTATCAGCTTGTTAGTAA
ACTTTCCATACCTTTTACTCCAGGCTGAGGAAGATGCCGCAGAGGTTCCA
GACTATTCCTGAGATGTCCATGTGCTGTTCTCTGGTGGACATAGTCCCTA
TAGATAAGGTATGATCATTATTAGACCAGTATGTCTTGTGTCTCTTTGGA
AAACGGCGCATTATCATACACCAAATACCAGTTACTCACAAACAACTGGA
TAGATGATCAGATGTTTCAGTTGCATCCACTACCTTTTGTCAGTGACACT
TGTATCTTTAGTTATGACCTGGATGTCCAACCTCCTTTGACAATACCTAT
CATATACCTTACAGTTCTTTTGATTTAATGCGTAGCATGAAAAAAACTAA
CTTTGAATGTTCTGATCACGAACTCTCACCCTAGTAATAACATTACGGTT
CAGTTCTTGAACATCAGACAATAGACATCTTAGCATTAGTGCATGCCCTG
TACCATTATGTAATGCCTCACTACAGGAAACAGGAAAGTGGTCCCAGGAA
GCCATACAAGCCTTCGCAAAGATGGTTGGGGACAAGCCAGTTCTCCTGAA
GGTGGGTTGCACTTTCTTTGGGTTGTTGCCTTATTATTCAAATCTGAAGG
TTCTGAGTTTTAATCCCTGGCCTGAAGCCTCAACGTTGTGCCCTTGGTAA
GATGTAATGTACACAAAACACCAAATCCTATTTCATCTCTTGACTCAGAT
TGAAATGAGACCCCTAGCTTTTGTTAAGTTTTGGGACGTAAAGCAGTAGG
TCCCGTGTTTGAGGAGAGCCATGCATGAGCAGTATAAAAAATACGCCATT
CTTAAATGTATCAATGAATTATACATGTACAAGGTTCCCTCCTGGTGTGA
GTGGATCAAACATGTTTTTTTACCTTCTCCTAAGTGCTGCCTAACTCTGT
AACAAATAGGGAATTGCGTGCCAAATGGATTCTTCAGTGTGCTAAAGGTT
AAACCTTTACACAAGTTACAGTCTGGGTTCATGGTTGACATCAGCTGTTA
TATATATTTGTAATGTCAATCTTTCTTCCAATTCAGGAATTTTTGAAGAC
AGTTAATGTTATTATTCCAGATCCTGAATCATTTCAGAAGTCTACTTACA
AAATGTGGTAAATATCTGATTCAGTAATTATTGAAAAACTCTCTCTCTCT
CTTTCCCCCTCTAATCCATTTTAACACATTTTATTTCCCATCATATGGGG
GTTGGACGTGCTTGCACATGGATGGGGGAGCCCCAGAACTCCTCATCAAG
TGCAAGTCTTTTTTGTAGCAAGAGTTTTTACGGCTGGATGCCCTTCCTAA
CGCCAACCCAAACCCTACTGTAGGGCATAGGACTATTAATCTTTTATCAT
GTGTAATATTATTCCAGATCCAGAATCACTCCGGAAGTCTACTGTATGTA
GATCTACACAAGCCACCTAATGAAGACATAGACACGGACATGCCTGTGTC
TCTCCGTGATGCCCTGGTGTTCCTGGAGGTGGCCTACCTCAGGTCCCCAC
ACTCCGTACCATCCTTTACTGGTAAGATCTCTCTCTCTCTCTCTCTATCC
AACTTAACGTCTTTTGTTCCCCATCATCTGGGGGTTGGACGTGCTTGCAC
ATGGATGGGAAAGCCCCAGAACTCCTCATCAAGTGCAAGTCCTTTTTTGT
AGCAAGAGTTTTTACGACTGGATGCCCTTCCTAACGCCAACCCAAACCCT
ACTGCTGGGCTTAGGACATGGGAAATGTGTGTTAAGTGCCTTTCCCAAGG
GCACAACGTTGCGTGCATGTCCGGACATGTCTGGGTACTCCACTGGGGAT
TGAACCTGGGTCTTATTGGTTCATAGCCGGATGCTGTGCCACTGTGCTAC
ACAGACGCCAGATGTCCGTTAAATACAAATTGTGAAGTCTCTGTCTGCCC
TCTAGAACTTGGAAGAATCCCTTCAATCTGATAAATGATTGATCTTTTGA
AGATGCACTCAGGCAAAAGCAGCAGACAAAGGATATAGTCACTGTTAATT
TGTGATTGATGCCTGTGTACCTCAACTGGTAGCACCCTCACAGTTGATCA
AGAGCTTTGCTAACTGGTAAACCCTGGTTCAATCCCGTGAATTCTCAGTT
ATGGCTGCACCTGTCTTTATACAGACAGTGTGAAAGATTGGGCCTGGCAT
ACAATTTATGCTAGTAGGTCCTTACCTTAGATGATGTTGTTAACATTTCA
ATATATTTCATCAAGACTAAAAGCCATTTTCAGTGGGGTCGTGTGGCGTA
ACGGCAGGGTTTTCGGCCCAGAACCCAGCGGTTGTTTGAATCCCCTAGGC
CAGATGCCACCCATCTTGTGCGCTTGGGAAAAAGGCACTTTGCACATCAA
CTTTCCTCACTCCACCAAAGTGTGTAAAAACGGGTATATTATGTGTGGGT
CACGACACCAGCAGTAGCTGCCTTTGTCTCACGTGTATCGCACTATTGCA
ATTCTGATAAAATCAAATCAATAAATACATATGGCTGTTGTGATCCTGTT
CCAGCATCTGTTCTGCAGCCCAGAAGGAAGTTCCTGCCAGCCGAACCCCT
GCTCCAGGGGCAGGACATCCCCGTGTTGGGCAGCCATGTCGCAGGGCCAG
ACCTCTTCTATGTACAAG Coding sequence (CDS) from alignment at Sc0000040:1559542..1564059+ >transcript:BL97134_cuf3 ID=transcript:BL97134_cuf3|Name=transcript:BL97134_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=4014bp|location=Sequence derived from alignment at Sc0000040:1559542..1564059+ (Branchiostoma lanceolatum)
AGCTCGGTGGACAGGTTTGGGTCCCAGGACTCCAGTCAGGGAGGGGAGGA
CACCTCCAGTAAGGACAGCAGCCCCAAACAGAAGAGGAAACAGAGAGTCA
GGACCAGCTGGAAACCAAGTCGCTGGGAGCTTGTTTTTGTGACCCACATC
AAACACCCGTGCCACTTCCTGGTGCAGCGACTGTCAGACAACGATCGAGT
CGACGCCATGATGAAGGCCATCAACAGGTTCTGTAACGGTCAGGAGCCTG
AACATGTCAACTTGGACAGCATGGCAGTGGGTGACCTGTGCCTTGCACAG
TACAGCTTTGACCACAAGTGGTACCGAGGTCGGATCAGGACAGTCTCGGG
AGGAGCCTCCGACGAATCCTCGGACAGCGGGGCAGACAAGAAAGAACCCA
TGGTGGAGGTGGCTTATGTAGACTACGGAAACTCAGAACTTGTACCCGTC
AGAAGGCTGAGGAAGATGCCGCAGAGGTTCCAGACTATTCCTGAGATGTC
CATGTGCTGTTCTCTGGTGGACATAGTCCCTATAGATAAGGGAAACAGGA
AAGTGGTCCCAGGAAGCCATACAAGCCTTCGCAAAGATGGTTGGGGACAA
GCCAGTTCTCCTGAAGATCCAGAATCACTCCGGAAGTCTACTGTATGTAG
ATCTACACAAGCCACCTAAAGCTCGGTGGACAGGTTTGGGTCCCAGGACT
CCAGTCAGGGAGGGGAGGACACCTCCAGTAAGGACAGCAGCCCCAAACAG
AAGAGGAAACAGAGAGTCAGGACCAGCTGGAAACCAAGTCGCTGGGAGCT
TGTTTTTGTGACCCACATCAAACACCCGTGCCACTTCCTGGTGCAGCGAC
TGTCAGACAACGATCGAGTCGACGCCATGATGAAGGCCATCAACAGGTTC
TGTAACGGTCAGGAGCCTGAACATGTCAACTTGGACAGCATGGCAGTGGG
TGACCTGTGCCTTGCACAGTACAGCTTTGACCACAAGTGGTACCGAGGTC
GGATCAGGACAGTCTCGGGAGGAGCCTCCGACGAATCCTCGGACAGCGGG
GCAGACAAGAAAGAACCCATGGTGGAGGTGGCTTATGTAGACTACGGAAA
CTCAGAACTTGTACCCGTCAGAAGGCTGAGGAAGATGCCGCAGAGGTTCC
AGACTATTCCTGAGATGTCCATGTGCTGTTCTCTGGTGGACATAGTCCCT
ATAGATAAGGGAAACAGGAAAGTGGTCCCAGGAAGCCATACAAGCCTTCG
CAAAGATGGTTGGGGACAAGCCAGTTCTCCTGAAGATCCAGAATCACTCC
GGAAGTCTACTGTATGTAGATCTACACAAGCCACCTAAAGCTCGGTGGAC
AGGTTTGGGTCCCAGGACTCCAGTCAGGGAGGGGAGGACACCTCCAGTAA
GGACAGCAGCCCCAAACAGAAGAGGAAACAGAGAGTCAGGACCAGCTGGA
AACCAAGTCGCTGGGAGCTTGTTTTTGTGACCCACATCAAACACCCGTGC
CACTTCCTGGTGCAGCGACTGTCAGACAACGATCGAGTCGACGCCATGAT
GAAGGCCATCAACAGGTTCTGTAACGGTCAGGAGCCTGAACATGTCAACT
TGGACAGCATGGCAGTGGGTGACCTGTGCCTTGCACAGTACAGCTTTGAC
CACAAGTGGTACCGAGGTCGGATCAGGACAGTCTCGGGAGGAGCCTCCGA
CGAATCCTCGGACAGCGGGGCAGACAAGAAAGAACCCATGGTGGAGGTGG
CTTATGTAGACTACGGAAACTCAGAACTTGTACCCGTCAGAAGGCTGAGG
AAGATGCCGCAGAGGTTCCAGACTATTCCTGAGATGTCCATGTGCTGTTC
TCTGGTGGACATAGTCCCTATAGATAAGGGAAACAGGAAAGTGGTCCCAG
GAAGCCATACAAGCCTTCGCAAAGATGGTTGGGGACAAGCCAGTTCTCCT
GAAGATCCAGAATCACTCCGGAAGTCTACTGTATGTAGATCTACACAAGC
CACCTAAAGCTCGGTGGACAGGTTTGGGTCCCAGGACTCCAGTCAGGGAG
GGGAGGACACCTCCAGTAAGGACAGCAGCCCCAAACAGAAGAGGAAACAG
AGAGTCAGGACCAGCTGGAAACCAAGTCGCTGGGAGCTTGTTTTTGTGAC
CCACATCAAACACCCGTGCCACTTCCTGGTGCAGCGACTGTCAGACAACG
ATCGAGTCGACGCCATGATGAAGGCCATCAACAGGTTCTGTAACGGTCAG
GAGCCTGAACATGTCAACTTGGACAGCATGGCAGTGGGTGACCTGTGCCT
TGCACAGTACAGCTTTGACCACAAGTGGTACCGAGGTCGGATCAGGACAG
TCTCGGGAGGAGCCTCCGACGAATCCTCGGACAGCGGGGCAGACAAGAAA
GAACCCATGGTGGAGGTGGCTTATGTAGACTACGGAAACTCAGAACTTGT
ACCCGTCAGAAGGCTGAGGAAGATGCCGCAGAGGTTCCAGACTATTCCTG
AGATGTCCATGTGCTGTTCTCTGGTGGACATAGTCCCTATAGATAAGGGA
AACAGGAAAGTGGTCCCAGGAAGCCATACAAGCCTTCGCAAAGATGGTTG
GGGACAAGCCAGTTCTCCTGAAGATCCAGAATCACTCCGGAAGTCTACTG
TATGTAGATCTACACAAGCCACCTAAAGCTCGGTGGACAGGTTTGGGTCC
CAGGACTCCAGTCAGGGAGGGGAGGACACCTCCAGTAAGGACAGCAGCCC
CAAACAGAAGAGGAAACAGAGAGTCAGGACCAGCTGGAAACCAAGTCGCT
GGGAGCTTGTTTTTGTGACCCACATCAAACACCCGTGCCACTTCCTGGTG
CAGCGACTGTCAGACAACGATCGAGTCGACGCCATGATGAAGGCCATCAA
CAGGTTCTGTAACGGTCAGGAGCCTGAACATGTCAACTTGGACAGCATGG
CAGTGGGTGACCTGTGCCTTGCACAGTACAGCTTTGACCACAAGTGGTAC
CGAGGTCGGATCAGGACAGTCTCGGGAGGAGCCTCCGACGAATCCTCGGA
CAGCGGGGCAGACAAGAAAGAACCCATGGTGGAGGTGGCTTATGTAGACT
ACGGAAACTCAGAACTTGTACCCGTCAGAAGGCTGAGGAAGATGCCGCAG
AGGTTCCAGACTATTCCTGAGATGTCCATGTGCTGTTCTCTGGTGGACAT
AGTCCCTATAGATAAGGGAAACAGGAAAGTGGTCCCAGGAAGCCATACAA
GCCTTCGCAAAGATGGTTGGGGACAAGCCAGTTCTCCTGAAGATCCAGAA
TCACTCCGGAAGTCTACTGTATGTAGATCTACACAAGCCACCTAAAGCTC
GGTGGACAGGTTTGGGTCCCAGGACTCCAGTCAGGGAGGGGAGGACACCT
CCAGTAAGGACAGCAGCCCCAAACAGAAGAGGAAACAGAGAGTCAGGACC
AGCTGGAAACCAAGTCGCTGGGAGCTTGTTTTTGTGACCCACATCAAACA
CCCGTGCCACTTCCTGGTGCAGCGACTGTCAGACAACGATCGAGTCGACG
CCATGATGAAGGCCATCAACAGGTTCTGTAACGGTCAGGAGCCTGAACAT
GTCAACTTGGACAGCATGGCAGTGGGTGACCTGTGCCTTGCACAGTACAG
CTTTGACCACAAGTGGTACCGAGGTCGGATCAGGACAGTCTCGGGAGGAG
CCTCCGACGAATCCTCGGACAGCGGGGCAGACAAGAAAGAACCCATGGTG
GAGGTGGCTTATGTAGACTACGGAAACTCAGAACTTGTACCCGTCAGAAG
GCTGAGGAAGATGCCGCAGAGGTTCCAGACTATTCCTGAGATGTCCATGT
GCTGTTCTCTGGTGGACATAGTCCCTATAGATAAGGGAAACAGGAAAGTG
GTCCCAGGAAGCCATACAAGCCTTCGCAAAGATGGTTGGGGACAAGCCAG
TTCTCCTGAAGATCCAGAATCACTCCGGAAGTCTACTGTATGTAGATCTA
CACAAGCCACCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000040 | genome | Sc0000040:1559542..1564059 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97134_cuf3 |
| Biotype | protein_coding |
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