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transcript:BL97133_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97133_cuf2
Unique Nametranscript:BL97133_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97133_cuf2

>transcript:BL97133_cuf2-protein ID=transcript:BL97133_cuf2-protein|Name=transcript:BL97133_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=217bp
KLLPCRSWCEEVMSMSDDLTKKLLPPCELFPSSQRECWNPEPATNGTEAC
YHGTGINYRGIWSMTTSGAKCLEWSAPEADYYTTEYPWANLDRNYCRNPT
GLHRPFCLTEDGSQEECNILPCNFVGCWDRGPPNYGKTTPRKRFYFFEEK
VTYTCNDGYTLEYGSAREVRCLEGNSGGIWEYDKPVCSINYKQRLEKDLL
GLYSASLAPENITINFT
Run BLAST on NCBI

mRNA from alignment at Sc0000040:1774869..1776406-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97133_cuf2 ID=transcript:BL97133_cuf2|Name=transcript:BL97133_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=1538bp|location=Sequence derived from alignment at Sc0000040:1774869..1776406- (Branchiostoma lanceolatum)
AAAACTGCTGCCATGCCGTTCTTGGTGTGAGGAAGTGATGAGTATGAGTG ATGACCTGACGAAGAAACTACTGCCTCCGTGTGAGTTGTTCCCATCATCA CAGCGGGAATGTTGGAATCCTGAACCAGCCACGAATGGTACTGAAGGTGG GAATCAGAACTTAGAACAATGTTTTTTGTTGCAAAAGTTTTTCCCTTTTT GAACGATGATTATATCTATCTACCTGCGTTGATTACTTTTAGCTTGGGCT TGTACTGTGAGCCGTAGCCATGAGAATCAAATCATCGTATCATCTCATCA TCAAGATGTGACTTTAATGTCGACTTGCAAAATTCAGGAGGTTTATGATA AAAACGAACTATTTTATCCGTTTTAAAAACCAAACAATGCAAATTTCTTT CTTTTTCTCAGCCTGCTACCACGGCACGGGTATAAACTACCGTGGGATAT GGAGTATGACTACTTCCGGGGCAAAGTGTCTTGAGTGGTCAGCTCCGGAA GCTGATTACTACACGACTGAGTACCCCTGGGCTAACCTGGACAGGAACTA CTGCCGTAACCCCACGGGTCTTCATCGGCCATTTTGTTTGACTGAAGACG GTAGCCAGGAGGAATGCAACATCCTTCCATGCAGTAAGCTGCTTGCTGTC AACAGAAACAATGTTTCTTGTTTCATTCATTTGCATGCAAACTCGTGTGT CTATTCCTGTAATCATCAAGGGCAATAATAAAATAAACAATGTGGTTAAA AATGTGTCCGCACTTGTTCTTTTCTTGATAGTATCATAGAATTGAATGGA TGTTGATTTTGCCATTTACAAGTAATATCTTGTACTTGTTATTTTTCTAG ATACTATTGAATGCAATAGAGGCTTGATTTGCCTCTGCATTTACAAATAA TATCTTGCTACGCTTAGATTTTGTTGGATGTTGGGACAGAGGTCCTCCAA ACTACGGCAAGACAACGCCAAGAAAGAGGTTCTACTTCTTCGAGGAAAAG GTCACATACACGTGCAACGATGGCTACACGCTTGAGTACGGCTCCGCCAG AGAAGTGAGGTGCCTTGAAGGGAACTCAGGAGGCATCTGGGAATATGACA AGCCCGTTTGTTCAAGTGAATGCTATAAGCATTACCGAACTTATAAACTT TCGAAATATTTTGCACGCTTAGCAAAGTATTCTTGACATGATTTTTCTGT TATAGAAAGGTAATAAGATCATGGCGATCTGCCAAAATGTAAACATGACG CTTTACCTTCAAGTTGGTTTTTACCTCCACGAACATTGTCAATCATTGGA GGCTTTTTTTGTCTGCGTGTCTCTGTATTTGTGTTAACGGATATTAGTGG TCATTATAGCGAACCTCTAGGTGGATTGTAATGATATATGGTACTTCGGA GGAATTAGGCCTAGAACATTTATTTGTCACTTACTTTTCTCCCCCCGCTT AGTCAACTACAAGCAAAGGCTTGAGAAGGATCTACTGGGACTCTACAGTG CCAGCCTGGCGCCAGAAAATATCACCATCAACTTCACG

Coding sequence (CDS) from alignment at Sc0000040:1774869..1776406-

>transcript:BL97133_cuf2 ID=transcript:BL97133_cuf2|Name=transcript:BL97133_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2604bp|location=Sequence derived from alignment at Sc0000040:1774869..1776406- (Branchiostoma lanceolatum)
AAACTGCTGCCATGCCGTTCTTGGTGTGAGGAAGTGATGAGTATGAGTGA
TGACCTGACGAAGAAACTACTGCCTCCGTGTGAGTTGTTCCCATCATCAC
AGCGGGAATGTTGGAATCCTGAACCAGCCACGAATGGTACTGAAGCCTGC
TACCACGGCACGGGTATAAACTACCGTGGGATATGGAGTATGACTACTTC
CGGGGCAAAGTGTCTTGAGTGGTCAGCTCCGGAAGCTGATTACTACACGA
CTGAGTACCCCTGGGCTAACCTGGACAGGAACTACTGCCGTAACCCCACG
GGTCTTCATCGGCCATTTTGTTTGACTGAAGACGGTAGCCAGGAGGAATG
CAACATCCTTCCATGCAATTTTGTTGGATGTTGGGACAGAGGTCCTCCAA
ACTACGGCAAGACAACGCCAAGAAAGAGGTTCTACTTCTTCGAGGAAAAG
GTCACATACACGTGCAACGATGGCTACACGCTTGAGTACGGCTCCGCCAG
AGAAGTGAGGTGCCTTGAAGGGAACTCAGGAGGCATCTGGGAATATGACA
AGCCCGTTTGTTCAATCAACTACAAGCAAAGGCTTGAGAAGGATCTACTG
GGACTCTACAGTGCCAGCCTGGCGCCAGAAAATATCACCATCAACTTCAC
GAAACTGCTGCCATGCCGTTCTTGGTGTGAGGAAGTGATGAGTATGAGTG
ATGACCTGACGAAGAAACTACTGCCTCCGTGTGAGTTGTTCCCATCATCA
CAGCGGGAATGTTGGAATCCTGAACCAGCCACGAATGGTACTGAAGCCTG
CTACCACGGCACGGGTATAAACTACCGTGGGATATGGAGTATGACTACTT
CCGGGGCAAAGTGTCTTGAGTGGTCAGCTCCGGAAGCTGATTACTACACG
ACTGAGTACCCCTGGGCTAACCTGGACAGGAACTACTGCCGTAACCCCAC
GGGTCTTCATCGGCCATTTTGTTTGACTGAAGACGGTAGCCAGGAGGAAT
GCAACATCCTTCCATGCAATTTTGTTGGATGTTGGGACAGAGGTCCTCCA
AACTACGGCAAGACAACGCCAAGAAAGAGGTTCTACTTCTTCGAGGAAAA
GGTCACATACACGTGCAACGATGGCTACACGCTTGAGTACGGCTCCGCCA
GAGAAGTGAGGTGCCTTGAAGGGAACTCAGGAGGCATCTGGGAATATGAC
AAGCCCGTTTGTTCAATCAACTACAAGCAAAGGCTTGAGAAGGATCTACT
GGGACTCTACAGTGCCAGCCTGGCGCCAGAAAATATCACCATCAACTTCA
CGAAACTGCTGCCATGCCGTTCTTGGTGTGAGGAAGTGATGAGTATGAGT
GATGACCTGACGAAGAAACTACTGCCTCCGTGTGAGTTGTTCCCATCATC
ACAGCGGGAATGTTGGAATCCTGAACCAGCCACGAATGGTACTGAAGCCT
GCTACCACGGCACGGGTATAAACTACCGTGGGATATGGAGTATGACTACT
TCCGGGGCAAAGTGTCTTGAGTGGTCAGCTCCGGAAGCTGATTACTACAC
GACTGAGTACCCCTGGGCTAACCTGGACAGGAACTACTGCCGTAACCCCA
CGGGTCTTCATCGGCCATTTTGTTTGACTGAAGACGGTAGCCAGGAGGAA
TGCAACATCCTTCCATGCAATTTTGTTGGATGTTGGGACAGAGGTCCTCC
AAACTACGGCAAGACAACGCCAAGAAAGAGGTTCTACTTCTTCGAGGAAA
AGGTCACATACACGTGCAACGATGGCTACACGCTTGAGTACGGCTCCGCC
AGAGAAGTGAGGTGCCTTGAAGGGAACTCAGGAGGCATCTGGGAATATGA
CAAGCCCGTTTGTTCAATCAACTACAAGCAAAGGCTTGAGAAGGATCTAC
TGGGACTCTACAGTGCCAGCCTGGCGCCAGAAAATATCACCATCAACTTC
ACGAAACTGCTGCCATGCCGTTCTTGGTGTGAGGAAGTGATGAGTATGAG
TGATGACCTGACGAAGAAACTACTGCCTCCGTGTGAGTTGTTCCCATCAT
CACAGCGGGAATGTTGGAATCCTGAACCAGCCACGAATGGTACTGAAGCC
TGCTACCACGGCACGGGTATAAACTACCGTGGGATATGGAGTATGACTAC
TTCCGGGGCAAAGTGTCTTGAGTGGTCAGCTCCGGAAGCTGATTACTACA
CGACTGAGTACCCCTGGGCTAACCTGGACAGGAACTACTGCCGTAACCCC
ACGGGTCTTCATCGGCCATTTTGTTTGACTGAAGACGGTAGCCAGGAGGA
ATGCAACATCCTTCCATGCAATTTTGTTGGATGTTGGGACAGAGGTCCTC
CAAACTACGGCAAGACAACGCCAAGAAAGAGGTTCTACTTCTTCGAGGAA
AAGGTCACATACACGTGCAACGATGGCTACACGCTTGAGTACGGCTCCGC
CAGAGAAGTGAGGTGCCTTGAAGGGAACTCAGGAGGCATCTGGGAATATG
ACAAGCCCGTTTGTTCAATCAACTACAAGCAAAGGCTTGAGAAGGATCTA
CTGGGACTCTACAGTGCCAGCCTGGCGCCAGAAAATATCACCATCAACTT
CACG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97133gene:BL97133Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97133_cuf2transcript:BL97133_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97133_cuf2-E1BL97133_cuf2-E1-1564476830-204412Branchiostoma lanceolatumexon
BL97133_cuf2-E2BL97133_cuf2-E2-1564476830-204409Branchiostoma lanceolatumexon
BL97133_cuf2-E3BL97133_cuf2-E3-1564476830-204407Branchiostoma lanceolatumexon
BL97133_cuf2-E4BL97133_cuf2-E4-1564476830-204405Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000040genomeSc0000040:1774869..1776406 -
Properties
Property NameValue
Transcript idBL97133_cuf2
Biotypeprotein_coding