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transcript:BL97132_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97132_cuf0
Unique Nametranscript:BL97132_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97132_cuf0

>transcript:BL97132_cuf0-protein ID=transcript:BL97132_cuf0-protein|Name=transcript:BL97132_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=332bp
CDADPFFFPADTMDCNVCFAATSAIEQTLQCHRRSSTSDVHVNNHPCDSY
SLATHEGEWYRRDKIFAKDDREACFSLHLSRIPTFHIATTVGPCIILVVL
MTITFIMPVDKGDRISYGVTIQLSMVVSLVFVTEVLPVKGALPFFATLII
VCMGLMGIFLFVTMGVIYIHGKEGRLSPMARAVLLRYMARVLLLGDLTKE
KQASNGTGEAGLTDHQDVVLTNIAFATSCEDPEMTREASEPPKGPESTGS
PGFRQLIASMDEMTKAVKRGTERMTEGMTELKNEMEELTKAVKSEEVVSD
YTLLAKVLDRLCLVLYVISIAAAIPMTMYLSK
Run BLAST on NCBI

mRNA from alignment at Sc0000040:1770507..1773171-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97132_cuf0 ID=transcript:BL97132_cuf0|Name=transcript:BL97132_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2665bp|location=Sequence derived from alignment at Sc0000040:1770507..1773171- (Branchiostoma lanceolatum)
GTGTGATGCTGACCCGTTCTTCTTCCCTGCAGACACCATGGATTGCAACG TCTGTTTTGCAGCAACCTCAGCAATCGAGCAAACCCTACGTAAGGTTTTT AGATATTTTGATGTACATCTATATGACAGAGCATTTACTAACACTTTTAC TATTGCATTACCTGAAGGGAAAGGTATTCCCAATATTACACAATATCCAG GAATCGGCAGATCTTTTAAGGGACTGTAATGATCATGATGTATTTACTAC AGAATGCCATCGGAGAAGCTCCACATCAGATGTACATGTAAACAACCATC CTTGTGACTCTTACTCCCTTGCAACACATGAGGGAGAATGGTATCGGAGG GATAAGATCTTTGCAAAAGACGACAGGGAGGCGTGTTTTTCTCTCCATCT GTCGAGGATCCCCACGTTCCACATCGCCACGACTGTTGGACCCTGCATCA TCCTGGTTGTACTGATGACCATCACCTTCATCATGCCCGTAGACAAGGGA GACCGGATCTCGTATGGAGTGACCATTCAACTCTCCATGGTCGTGTCTCT TGTATTTGTTACGGAGGTTCTTCCTGTCAAGGGGGCTCTACCATTTTTCG GTGAGCACTGACACTTCAGTTGATAATAATGATTTAACTGTAACATTTTC CAGGAAACTATTGAAATGCGCTGCCAAACAATTTGTGCTGCCAATTTCCT AATAATTCTAGTAACCATTGAAATTATTTGCTATCTTCGAATTTCACAGC CACGCTGATCATTGTGTGCATGGGCCTGATGGGAATCTTTCTCTTCGTCA CCATGGGCGTCATCTATATCCACGGCAAAGAGGGCCGCCTGTCTCCGATG GCGAGGGCTGTTCTTCTCCGCTACATGGCAAGGTACTGAATATTAGTCTT TATATCATTCCCGGGCCGCGATAACCTTCGACACGTGTGTTCGGACCGGT CCGCACTTTACGGGACAGGCCGTGCTTCCCTCGTTCGATTCGAACGATTC GAATTCGCAATTCGAATACCCAAGGACATTATATAGGAATGTCCTTGGAA TACCCAATTCGAACGTTGAAATCAATGTTGATACATTGTTTTGTTTGAGG TCACAAACCTTTCTCAACTTCTGGCGAATTTCGCATTGAAGTGTGTTTGT TTTCGTGTGGGTATGACACCGATAGAACTCCGGCAACACGGTGTATTTTG CATCACCCTCGGTCTCTGCCCTCCTGTGGATCGGCACCTCGGGAGATAAG GAATACACAGTGTTGTAATCTATATTCATATCATTGGTGTCCGGTATCAT ATAGAGAGGTCGTTCATTTAGGAATTCTTGACCATGTATTCCTTTCTGAG ACCTCAACGGAGAACAATATGTTGTTATGGAATATGTACCATGTACGTAT TCTATCCACCAAATGCTTGCCGGTGCTAGTTTACTCATCTTCGGTTAGTT GGCAATTTTTAAAGATAGAATCATGAATGGCTTAATGAGTCAATGCCTTG TTGACTCAAAGGAAAGTCTACGAAGCTTTGGGGAATGATTCAAGGCATCT ATGCAGCTTGCTTACGAACTGTAGATCAGATGTGCTATCGTGTCAATTTG CAGACACTTGCACGTAGAGGGGCATCAACTTCATTTTGTATATCATATCA TTTGTAAAGGGTGCTACTTCTGGGAGATCTCACAAAGGAGAAGCAAGCAA GCAATGGTACCGGCGAAGCTGGCCTGACTGACCACCAAGACGTAGTGCTG ACAAACATCGCCTTCGCCACGAGTTGTGAAGACCCCGAGATGACCAGAGA GGCATCAGAGCCTCCTAAAGGTCCCGAGTCCACTGGATCCCCAGGGTTTC GTCAGCTGATCGCAAGTATGGATGAGATGACCAAGGCGGTAAAGAGAGGG ACGGAGAGGATGACAGAGGGAATGACCGAGTTGAAGAACGAAATGGAGGA GCTGACCAAGGCGGTAAAGAGCGAGGAGGTGGTGTCCGACTACACCCTGC TGGCTAAGGTCCTGGACAGGCTGTGTCTTGTCCTGTACGTCATCAGTATC GCAGCAGCCATTCCGATGACCATGTATTTGAGCAAGTAAAAGAATATAGA TGCAAAGGTAATAAGATGTAGTAGCTGTGTGCGGCAGACTATGTCAAAAA GTCTGCACGTTTCGGTAAATAACAGCCCTGTAGTATAGATATTTTTAGCA CAATTTGTCCAATGAGCAGATCTTGTGAAGGTTAGTAATTTTTGCATGTT TTGCATAAACGATTTTTCAAAGATGGCTTATGACTTATCTATTGTAGGGC TTTAGAAATGCCTGAGGTTTTAAGAAGTTTCCACCTGACTCTCTCTAGAG TTTCTGTCACTAAGTTGAACTCGATACGTATGATATTGAGATTTCAGTCG TCTTGTGAAGTAGCTTAGCTGAATGTATTGTGTGATAAGCTTTTTGGTTG AAAGATATTTGCATGACGAAGTTTCATATACCTGTAGTAATAAAACTTTA AAGTATCAACAGCTGAACAACGTGACTTATCTTTTCTTTATTACCATTTT GCATTGTTAAGATATCGAGCCTTTGCCATTCACCGACACGTGTTTGGTCT TTCGATAAAGATATTTGTATAACTTTATGATTGTGCATGATGATGTGAAA AAAAATGCCGGAGAC

Coding sequence (CDS) from alignment at Sc0000040:1770507..1773171-

>transcript:BL97132_cuf0 ID=transcript:BL97132_cuf0|Name=transcript:BL97132_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3996bp|location=Sequence derived from alignment at Sc0000040:1770507..1773171- (Branchiostoma lanceolatum)
TGTGATGCTGACCCGTTCTTCTTCCCTGCAGACACCATGGATTGCAACGT
CTGTTTTGCAGCAACCTCAGCAATCGAGCAAACCCTACAATGCCATCGGA
GAAGCTCCACATCAGATGTACATGTAAACAACCATCCTTGTGACTCTTAC
TCCCTTGCAACACATGAGGGAGAATGGTATCGGAGGGATAAGATCTTTGC
AAAAGACGACAGGGAGGCGTGTTTTTCTCTCCATCTGTCGAGGATCCCCA
CGTTCCACATCGCCACGACTGTTGGACCCTGCATCATCCTGGTTGTACTG
ATGACCATCACCTTCATCATGCCCGTAGACAAGGGAGACCGGATCTCGTA
TGGAGTGACCATTCAACTCTCCATGGTCGTGTCTCTTGTATTTGTTACGG
AGGTTCTTCCTGTCAAGGGGGCTCTACCATTTTTCGCCACGCTGATCATT
GTGTGCATGGGCCTGATGGGAATCTTTCTCTTCGTCACCATGGGCGTCAT
CTATATCCACGGCAAAGAGGGCCGCCTGTCTCCGATGGCGAGGGCTGTTC
TTCTCCGCTACATGGCAAGGGTGCTACTTCTGGGAGATCTCACAAAGGAG
AAGCAAGCAAGCAATGGTACCGGCGAAGCTGGCCTGACTGACCACCAAGA
CGTAGTGCTGACAAACATCGCCTTCGCCACGAGTTGTGAAGACCCCGAGA
TGACCAGAGAGGCATCAGAGCCTCCTAAAGGTCCCGAGTCCACTGGATCC
CCAGGGTTTCGTCAGCTGATCGCAAGTATGGATGAGATGACCAAGGCGGT
AAAGAGAGGGACGGAGAGGATGACAGAGGGAATGACCGAGTTGAAGAACG
AAATGGAGGAGCTGACCAAGGCGGTAAAGAGCGAGGAGGTGGTGTCCGAC
TACACCCTGCTGGCTAAGGTCCTGGACAGGCTGTGTCTTGTCCTGTACGT
CATCAGTATCGCAGCAGCCATTCCGATGACCATGTATTTGAGCAAGTAAT
GTGATGCTGACCCGTTCTTCTTCCCTGCAGACACCATGGATTGCAACGTC
TGTTTTGCAGCAACCTCAGCAATCGAGCAAACCCTACAATGCCATCGGAG
AAGCTCCACATCAGATGTACATGTAAACAACCATCCTTGTGACTCTTACT
CCCTTGCAACACATGAGGGAGAATGGTATCGGAGGGATAAGATCTTTGCA
AAAGACGACAGGGAGGCGTGTTTTTCTCTCCATCTGTCGAGGATCCCCAC
GTTCCACATCGCCACGACTGTTGGACCCTGCATCATCCTGGTTGTACTGA
TGACCATCACCTTCATCATGCCCGTAGACAAGGGAGACCGGATCTCGTAT
GGAGTGACCATTCAACTCTCCATGGTCGTGTCTCTTGTATTTGTTACGGA
GGTTCTTCCTGTCAAGGGGGCTCTACCATTTTTCGCCACGCTGATCATTG
TGTGCATGGGCCTGATGGGAATCTTTCTCTTCGTCACCATGGGCGTCATC
TATATCCACGGCAAAGAGGGCCGCCTGTCTCCGATGGCGAGGGCTGTTCT
TCTCCGCTACATGGCAAGGGTGCTACTTCTGGGAGATCTCACAAAGGAGA
AGCAAGCAAGCAATGGTACCGGCGAAGCTGGCCTGACTGACCACCAAGAC
GTAGTGCTGACAAACATCGCCTTCGCCACGAGTTGTGAAGACCCCGAGAT
GACCAGAGAGGCATCAGAGCCTCCTAAAGGTCCCGAGTCCACTGGATCCC
CAGGGTTTCGTCAGCTGATCGCAAGTATGGATGAGATGACCAAGGCGGTA
AAGAGAGGGACGGAGAGGATGACAGAGGGAATGACCGAGTTGAAGAACGA
AATGGAGGAGCTGACCAAGGCGGTAAAGAGCGAGGAGGTGGTGTCCGACT
ACACCCTGCTGGCTAAGGTCCTGGACAGGCTGTGTCTTGTCCTGTACGTC
ATCAGTATCGCAGCAGCCATTCCGATGACCATGTATTTGAGCAAGTAATG
TGATGCTGACCCGTTCTTCTTCCCTGCAGACACCATGGATTGCAACGTCT
GTTTTGCAGCAACCTCAGCAATCGAGCAAACCCTACAATGCCATCGGAGA
AGCTCCACATCAGATGTACATGTAAACAACCATCCTTGTGACTCTTACTC
CCTTGCAACACATGAGGGAGAATGGTATCGGAGGGATAAGATCTTTGCAA
AAGACGACAGGGAGGCGTGTTTTTCTCTCCATCTGTCGAGGATCCCCACG
TTCCACATCGCCACGACTGTTGGACCCTGCATCATCCTGGTTGTACTGAT
GACCATCACCTTCATCATGCCCGTAGACAAGGGAGACCGGATCTCGTATG
GAGTGACCATTCAACTCTCCATGGTCGTGTCTCTTGTATTTGTTACGGAG
GTTCTTCCTGTCAAGGGGGCTCTACCATTTTTCGCCACGCTGATCATTGT
GTGCATGGGCCTGATGGGAATCTTTCTCTTCGTCACCATGGGCGTCATCT
ATATCCACGGCAAAGAGGGCCGCCTGTCTCCGATGGCGAGGGCTGTTCTT
CTCCGCTACATGGCAAGGGTGCTACTTCTGGGAGATCTCACAAAGGAGAA
GCAAGCAAGCAATGGTACCGGCGAAGCTGGCCTGACTGACCACCAAGACG
TAGTGCTGACAAACATCGCCTTCGCCACGAGTTGTGAAGACCCCGAGATG
ACCAGAGAGGCATCAGAGCCTCCTAAAGGTCCCGAGTCCACTGGATCCCC
AGGGTTTCGTCAGCTGATCGCAAGTATGGATGAGATGACCAAGGCGGTAA
AGAGAGGGACGGAGAGGATGACAGAGGGAATGACCGAGTTGAAGAACGAA
ATGGAGGAGCTGACCAAGGCGGTAAAGAGCGAGGAGGTGGTGTCCGACTA
CACCCTGCTGGCTAAGGTCCTGGACAGGCTGTGTCTTGTCCTGTACGTCA
TCAGTATCGCAGCAGCCATTCCGATGACCATGTATTTGAGCAAGTAATGT
GATGCTGACCCGTTCTTCTTCCCTGCAGACACCATGGATTGCAACGTCTG
TTTTGCAGCAACCTCAGCAATCGAGCAAACCCTACAATGCCATCGGAGAA
GCTCCACATCAGATGTACATGTAAACAACCATCCTTGTGACTCTTACTCC
CTTGCAACACATGAGGGAGAATGGTATCGGAGGGATAAGATCTTTGCAAA
AGACGACAGGGAGGCGTGTTTTTCTCTCCATCTGTCGAGGATCCCCACGT
TCCACATCGCCACGACTGTTGGACCCTGCATCATCCTGGTTGTACTGATG
ACCATCACCTTCATCATGCCCGTAGACAAGGGAGACCGGATCTCGTATGG
AGTGACCATTCAACTCTCCATGGTCGTGTCTCTTGTATTTGTTACGGAGG
TTCTTCCTGTCAAGGGGGCTCTACCATTTTTCGCCACGCTGATCATTGTG
TGCATGGGCCTGATGGGAATCTTTCTCTTCGTCACCATGGGCGTCATCTA
TATCCACGGCAAAGAGGGCCGCCTGTCTCCGATGGCGAGGGCTGTTCTTC
TCCGCTACATGGCAAGGGTGCTACTTCTGGGAGATCTCACAAAGGAGAAG
CAAGCAAGCAATGGTACCGGCGAAGCTGGCCTGACTGACCACCAAGACGT
AGTGCTGACAAACATCGCCTTCGCCACGAGTTGTGAAGACCCCGAGATGA
CCAGAGAGGCATCAGAGCCTCCTAAAGGTCCCGAGTCCACTGGATCCCCA
GGGTTTCGTCAGCTGATCGCAAGTATGGATGAGATGACCAAGGCGGTAAA
GAGAGGGACGGAGAGGATGACAGAGGGAATGACCGAGTTGAAGAACGAAA
TGGAGGAGCTGACCAAGGCGGTAAAGAGCGAGGAGGTGGTGTCCGACTAC
ACCCTGCTGGCTAAGGTCCTGGACAGGCTGTGTCTTGTCCTGTACGTCAT
CAGTATCGCAGCAGCCATTCCGATGACCATGTATTTGAGCAAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97132gene:BL97132Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97132_cuf0transcript:BL97132_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97132_cuf0-E1BL97132_cuf0-E1-1564476830-204400Branchiostoma lanceolatumexon
BL97132_cuf0-E2BL97132_cuf0-E2-1564476830-204397Branchiostoma lanceolatumexon
BL97132_cuf0-E3BL97132_cuf0-E3-1564476830-204395Branchiostoma lanceolatumexon
BL97132_cuf0-E4BL97132_cuf0-E4-1564476830-204393Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000040genomeSc0000040:1770507..1773171 -
Properties
Property NameValue
Transcript idBL97132_cuf0
Biotypeprotein_coding