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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97132_cuf0 >transcript:BL97132_cuf0-protein ID=transcript:BL97132_cuf0-protein|Name=transcript:BL97132_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=332bp
CDADPFFFPADTMDCNVCFAATSAIEQTLQCHRRSSTSDVHVNNHPCDSY
SLATHEGEWYRRDKIFAKDDREACFSLHLSRIPTFHIATTVGPCIILVVL
MTITFIMPVDKGDRISYGVTIQLSMVVSLVFVTEVLPVKGALPFFATLII
VCMGLMGIFLFVTMGVIYIHGKEGRLSPMARAVLLRYMARVLLLGDLTKE
KQASNGTGEAGLTDHQDVVLTNIAFATSCEDPEMTREASEPPKGPESTGS
PGFRQLIASMDEMTKAVKRGTERMTEGMTELKNEMEELTKAVKSEEVVSD
YTLLAKVLDRLCLVLYVISIAAAIPMTMYLSK Run BLAST on NCBI mRNA from alignment at Sc0000040:1770507..1773171- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97132_cuf0 ID=transcript:BL97132_cuf0|Name=transcript:BL97132_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2665bp|location=Sequence derived from alignment at Sc0000040:1770507..1773171- (Branchiostoma lanceolatum)
GTGTGATGCTGACCCGTTCTTCTTCCCTGCAGACACCATGGATTGCAACG
TCTGTTTTGCAGCAACCTCAGCAATCGAGCAAACCCTACGTAAGGTTTTT
AGATATTTTGATGTACATCTATATGACAGAGCATTTACTAACACTTTTAC
TATTGCATTACCTGAAGGGAAAGGTATTCCCAATATTACACAATATCCAG
GAATCGGCAGATCTTTTAAGGGACTGTAATGATCATGATGTATTTACTAC
AGAATGCCATCGGAGAAGCTCCACATCAGATGTACATGTAAACAACCATC
CTTGTGACTCTTACTCCCTTGCAACACATGAGGGAGAATGGTATCGGAGG
GATAAGATCTTTGCAAAAGACGACAGGGAGGCGTGTTTTTCTCTCCATCT
GTCGAGGATCCCCACGTTCCACATCGCCACGACTGTTGGACCCTGCATCA
TCCTGGTTGTACTGATGACCATCACCTTCATCATGCCCGTAGACAAGGGA
GACCGGATCTCGTATGGAGTGACCATTCAACTCTCCATGGTCGTGTCTCT
TGTATTTGTTACGGAGGTTCTTCCTGTCAAGGGGGCTCTACCATTTTTCG
GTGAGCACTGACACTTCAGTTGATAATAATGATTTAACTGTAACATTTTC
CAGGAAACTATTGAAATGCGCTGCCAAACAATTTGTGCTGCCAATTTCCT
AATAATTCTAGTAACCATTGAAATTATTTGCTATCTTCGAATTTCACAGC
CACGCTGATCATTGTGTGCATGGGCCTGATGGGAATCTTTCTCTTCGTCA
CCATGGGCGTCATCTATATCCACGGCAAAGAGGGCCGCCTGTCTCCGATG
GCGAGGGCTGTTCTTCTCCGCTACATGGCAAGGTACTGAATATTAGTCTT
TATATCATTCCCGGGCCGCGATAACCTTCGACACGTGTGTTCGGACCGGT
CCGCACTTTACGGGACAGGCCGTGCTTCCCTCGTTCGATTCGAACGATTC
GAATTCGCAATTCGAATACCCAAGGACATTATATAGGAATGTCCTTGGAA
TACCCAATTCGAACGTTGAAATCAATGTTGATACATTGTTTTGTTTGAGG
TCACAAACCTTTCTCAACTTCTGGCGAATTTCGCATTGAAGTGTGTTTGT
TTTCGTGTGGGTATGACACCGATAGAACTCCGGCAACACGGTGTATTTTG
CATCACCCTCGGTCTCTGCCCTCCTGTGGATCGGCACCTCGGGAGATAAG
GAATACACAGTGTTGTAATCTATATTCATATCATTGGTGTCCGGTATCAT
ATAGAGAGGTCGTTCATTTAGGAATTCTTGACCATGTATTCCTTTCTGAG
ACCTCAACGGAGAACAATATGTTGTTATGGAATATGTACCATGTACGTAT
TCTATCCACCAAATGCTTGCCGGTGCTAGTTTACTCATCTTCGGTTAGTT
GGCAATTTTTAAAGATAGAATCATGAATGGCTTAATGAGTCAATGCCTTG
TTGACTCAAAGGAAAGTCTACGAAGCTTTGGGGAATGATTCAAGGCATCT
ATGCAGCTTGCTTACGAACTGTAGATCAGATGTGCTATCGTGTCAATTTG
CAGACACTTGCACGTAGAGGGGCATCAACTTCATTTTGTATATCATATCA
TTTGTAAAGGGTGCTACTTCTGGGAGATCTCACAAAGGAGAAGCAAGCAA
GCAATGGTACCGGCGAAGCTGGCCTGACTGACCACCAAGACGTAGTGCTG
ACAAACATCGCCTTCGCCACGAGTTGTGAAGACCCCGAGATGACCAGAGA
GGCATCAGAGCCTCCTAAAGGTCCCGAGTCCACTGGATCCCCAGGGTTTC
GTCAGCTGATCGCAAGTATGGATGAGATGACCAAGGCGGTAAAGAGAGGG
ACGGAGAGGATGACAGAGGGAATGACCGAGTTGAAGAACGAAATGGAGGA
GCTGACCAAGGCGGTAAAGAGCGAGGAGGTGGTGTCCGACTACACCCTGC
TGGCTAAGGTCCTGGACAGGCTGTGTCTTGTCCTGTACGTCATCAGTATC
GCAGCAGCCATTCCGATGACCATGTATTTGAGCAAGTAAAAGAATATAGA
TGCAAAGGTAATAAGATGTAGTAGCTGTGTGCGGCAGACTATGTCAAAAA
GTCTGCACGTTTCGGTAAATAACAGCCCTGTAGTATAGATATTTTTAGCA
CAATTTGTCCAATGAGCAGATCTTGTGAAGGTTAGTAATTTTTGCATGTT
TTGCATAAACGATTTTTCAAAGATGGCTTATGACTTATCTATTGTAGGGC
TTTAGAAATGCCTGAGGTTTTAAGAAGTTTCCACCTGACTCTCTCTAGAG
TTTCTGTCACTAAGTTGAACTCGATACGTATGATATTGAGATTTCAGTCG
TCTTGTGAAGTAGCTTAGCTGAATGTATTGTGTGATAAGCTTTTTGGTTG
AAAGATATTTGCATGACGAAGTTTCATATACCTGTAGTAATAAAACTTTA
AAGTATCAACAGCTGAACAACGTGACTTATCTTTTCTTTATTACCATTTT
GCATTGTTAAGATATCGAGCCTTTGCCATTCACCGACACGTGTTTGGTCT
TTCGATAAAGATATTTGTATAACTTTATGATTGTGCATGATGATGTGAAA
AAAAATGCCGGAGAC Coding sequence (CDS) from alignment at Sc0000040:1770507..1773171- >transcript:BL97132_cuf0 ID=transcript:BL97132_cuf0|Name=transcript:BL97132_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3996bp|location=Sequence derived from alignment at Sc0000040:1770507..1773171- (Branchiostoma lanceolatum)
TGTGATGCTGACCCGTTCTTCTTCCCTGCAGACACCATGGATTGCAACGT
CTGTTTTGCAGCAACCTCAGCAATCGAGCAAACCCTACAATGCCATCGGA
GAAGCTCCACATCAGATGTACATGTAAACAACCATCCTTGTGACTCTTAC
TCCCTTGCAACACATGAGGGAGAATGGTATCGGAGGGATAAGATCTTTGC
AAAAGACGACAGGGAGGCGTGTTTTTCTCTCCATCTGTCGAGGATCCCCA
CGTTCCACATCGCCACGACTGTTGGACCCTGCATCATCCTGGTTGTACTG
ATGACCATCACCTTCATCATGCCCGTAGACAAGGGAGACCGGATCTCGTA
TGGAGTGACCATTCAACTCTCCATGGTCGTGTCTCTTGTATTTGTTACGG
AGGTTCTTCCTGTCAAGGGGGCTCTACCATTTTTCGCCACGCTGATCATT
GTGTGCATGGGCCTGATGGGAATCTTTCTCTTCGTCACCATGGGCGTCAT
CTATATCCACGGCAAAGAGGGCCGCCTGTCTCCGATGGCGAGGGCTGTTC
TTCTCCGCTACATGGCAAGGGTGCTACTTCTGGGAGATCTCACAAAGGAG
AAGCAAGCAAGCAATGGTACCGGCGAAGCTGGCCTGACTGACCACCAAGA
CGTAGTGCTGACAAACATCGCCTTCGCCACGAGTTGTGAAGACCCCGAGA
TGACCAGAGAGGCATCAGAGCCTCCTAAAGGTCCCGAGTCCACTGGATCC
CCAGGGTTTCGTCAGCTGATCGCAAGTATGGATGAGATGACCAAGGCGGT
AAAGAGAGGGACGGAGAGGATGACAGAGGGAATGACCGAGTTGAAGAACG
AAATGGAGGAGCTGACCAAGGCGGTAAAGAGCGAGGAGGTGGTGTCCGAC
TACACCCTGCTGGCTAAGGTCCTGGACAGGCTGTGTCTTGTCCTGTACGT
CATCAGTATCGCAGCAGCCATTCCGATGACCATGTATTTGAGCAAGTAAT
GTGATGCTGACCCGTTCTTCTTCCCTGCAGACACCATGGATTGCAACGTC
TGTTTTGCAGCAACCTCAGCAATCGAGCAAACCCTACAATGCCATCGGAG
AAGCTCCACATCAGATGTACATGTAAACAACCATCCTTGTGACTCTTACT
CCCTTGCAACACATGAGGGAGAATGGTATCGGAGGGATAAGATCTTTGCA
AAAGACGACAGGGAGGCGTGTTTTTCTCTCCATCTGTCGAGGATCCCCAC
GTTCCACATCGCCACGACTGTTGGACCCTGCATCATCCTGGTTGTACTGA
TGACCATCACCTTCATCATGCCCGTAGACAAGGGAGACCGGATCTCGTAT
GGAGTGACCATTCAACTCTCCATGGTCGTGTCTCTTGTATTTGTTACGGA
GGTTCTTCCTGTCAAGGGGGCTCTACCATTTTTCGCCACGCTGATCATTG
TGTGCATGGGCCTGATGGGAATCTTTCTCTTCGTCACCATGGGCGTCATC
TATATCCACGGCAAAGAGGGCCGCCTGTCTCCGATGGCGAGGGCTGTTCT
TCTCCGCTACATGGCAAGGGTGCTACTTCTGGGAGATCTCACAAAGGAGA
AGCAAGCAAGCAATGGTACCGGCGAAGCTGGCCTGACTGACCACCAAGAC
GTAGTGCTGACAAACATCGCCTTCGCCACGAGTTGTGAAGACCCCGAGAT
GACCAGAGAGGCATCAGAGCCTCCTAAAGGTCCCGAGTCCACTGGATCCC
CAGGGTTTCGTCAGCTGATCGCAAGTATGGATGAGATGACCAAGGCGGTA
AAGAGAGGGACGGAGAGGATGACAGAGGGAATGACCGAGTTGAAGAACGA
AATGGAGGAGCTGACCAAGGCGGTAAAGAGCGAGGAGGTGGTGTCCGACT
ACACCCTGCTGGCTAAGGTCCTGGACAGGCTGTGTCTTGTCCTGTACGTC
ATCAGTATCGCAGCAGCCATTCCGATGACCATGTATTTGAGCAAGTAATG
TGATGCTGACCCGTTCTTCTTCCCTGCAGACACCATGGATTGCAACGTCT
GTTTTGCAGCAACCTCAGCAATCGAGCAAACCCTACAATGCCATCGGAGA
AGCTCCACATCAGATGTACATGTAAACAACCATCCTTGTGACTCTTACTC
CCTTGCAACACATGAGGGAGAATGGTATCGGAGGGATAAGATCTTTGCAA
AAGACGACAGGGAGGCGTGTTTTTCTCTCCATCTGTCGAGGATCCCCACG
TTCCACATCGCCACGACTGTTGGACCCTGCATCATCCTGGTTGTACTGAT
GACCATCACCTTCATCATGCCCGTAGACAAGGGAGACCGGATCTCGTATG
GAGTGACCATTCAACTCTCCATGGTCGTGTCTCTTGTATTTGTTACGGAG
GTTCTTCCTGTCAAGGGGGCTCTACCATTTTTCGCCACGCTGATCATTGT
GTGCATGGGCCTGATGGGAATCTTTCTCTTCGTCACCATGGGCGTCATCT
ATATCCACGGCAAAGAGGGCCGCCTGTCTCCGATGGCGAGGGCTGTTCTT
CTCCGCTACATGGCAAGGGTGCTACTTCTGGGAGATCTCACAAAGGAGAA
GCAAGCAAGCAATGGTACCGGCGAAGCTGGCCTGACTGACCACCAAGACG
TAGTGCTGACAAACATCGCCTTCGCCACGAGTTGTGAAGACCCCGAGATG
ACCAGAGAGGCATCAGAGCCTCCTAAAGGTCCCGAGTCCACTGGATCCCC
AGGGTTTCGTCAGCTGATCGCAAGTATGGATGAGATGACCAAGGCGGTAA
AGAGAGGGACGGAGAGGATGACAGAGGGAATGACCGAGTTGAAGAACGAA
ATGGAGGAGCTGACCAAGGCGGTAAAGAGCGAGGAGGTGGTGTCCGACTA
CACCCTGCTGGCTAAGGTCCTGGACAGGCTGTGTCTTGTCCTGTACGTCA
TCAGTATCGCAGCAGCCATTCCGATGACCATGTATTTGAGCAAGTAATGT
GATGCTGACCCGTTCTTCTTCCCTGCAGACACCATGGATTGCAACGTCTG
TTTTGCAGCAACCTCAGCAATCGAGCAAACCCTACAATGCCATCGGAGAA
GCTCCACATCAGATGTACATGTAAACAACCATCCTTGTGACTCTTACTCC
CTTGCAACACATGAGGGAGAATGGTATCGGAGGGATAAGATCTTTGCAAA
AGACGACAGGGAGGCGTGTTTTTCTCTCCATCTGTCGAGGATCCCCACGT
TCCACATCGCCACGACTGTTGGACCCTGCATCATCCTGGTTGTACTGATG
ACCATCACCTTCATCATGCCCGTAGACAAGGGAGACCGGATCTCGTATGG
AGTGACCATTCAACTCTCCATGGTCGTGTCTCTTGTATTTGTTACGGAGG
TTCTTCCTGTCAAGGGGGCTCTACCATTTTTCGCCACGCTGATCATTGTG
TGCATGGGCCTGATGGGAATCTTTCTCTTCGTCACCATGGGCGTCATCTA
TATCCACGGCAAAGAGGGCCGCCTGTCTCCGATGGCGAGGGCTGTTCTTC
TCCGCTACATGGCAAGGGTGCTACTTCTGGGAGATCTCACAAAGGAGAAG
CAAGCAAGCAATGGTACCGGCGAAGCTGGCCTGACTGACCACCAAGACGT
AGTGCTGACAAACATCGCCTTCGCCACGAGTTGTGAAGACCCCGAGATGA
CCAGAGAGGCATCAGAGCCTCCTAAAGGTCCCGAGTCCACTGGATCCCCA
GGGTTTCGTCAGCTGATCGCAAGTATGGATGAGATGACCAAGGCGGTAAA
GAGAGGGACGGAGAGGATGACAGAGGGAATGACCGAGTTGAAGAACGAAA
TGGAGGAGCTGACCAAGGCGGTAAAGAGCGAGGAGGTGGTGTCCGACTAC
ACCCTGCTGGCTAAGGTCCTGGACAGGCTGTGTCTTGTCCTGTACGTCAT
CAGTATCGCAGCAGCCATTCCGATGACCATGTATTTGAGCAAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000040 | genome | Sc0000040:1770507..1773171 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97132_cuf0 |
| Biotype | protein_coding |
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