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transcript:BL97131_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97131_cuf4
Unique Nametranscript:BL97131_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97131_cuf4

>transcript:BL97131_cuf4-protein ID=transcript:BL97131_cuf4-protein|Name=transcript:BL97131_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=185bp
VCVTEAHSGSVRAKVRAEGIDGIASQDYADFYYVDRWSSVYTWGGESLPE
QGDFVIVHEGQTLLLDTDTPILRMLLIQGGTLLFHDEGDVHLQSEYILIT
DGGTLQVGTEEEPFQHQATITLHGHLRSKELPIYGAKVLGVRNGTLDIHG
SPVPVTWTRLAQTAAAGQTTLVLEQPVTWKAGDCI
Run BLAST on NCBI

mRNA from alignment at Sc0000040:1847324..1849189-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97131_cuf4 ID=transcript:BL97131_cuf4|Name=transcript:BL97131_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=1866bp|location=Sequence derived from alignment at Sc0000040:1847324..1849189- (Branchiostoma lanceolatum)
TCGTCTGTGTGACTGAGGCCCACAGTGGAAGCGTGAGGGCTAAAGTTAGG GCAGAGGGCATTGATGGGATCGCTTCACAGGTAAGGTCCTTTTAGATTGA AAACTTTCTTGTTATCACAAACTTACATAAAAAGTCGTACTCGTTCTGGT CCATACAGCGTTGCGCAAGTTGACTGTGTGTTGTGTGAATGGGGAGTAAC ACTGAATAACACATACTGTAGCGGGAATAACAGAAAAACATTGAACGAAG ATGATTGTACTGTTACGCATGACTAAAAGTTGCTTGATGAGAAGCTTTCA GTCAGCATGCATCGTTTTTCTTCTGCCCTCAATGGGTAGTCACGTAACCC GGGAGTCAAATGTCACACCGGTCACGTGACATCGCAGAAAAACATATTCT GAAATTTGTATTGATGTACATAACTATTCTGCTCCTCGTTTATTTAAATA GAGATGCATGTATCAATCAAGTCAACGATCATAGCTTAATTCTTAAACTG TCTTATTTGATTTCATCTGCCTCATATATATTTTTTTTTACTTCTATGCA TTACGTATCCAGGACTACGCAGACTTCTACTACGTTGACAGGTGGTCGTC CGTGTACACTTGGGGCGGGGAAAGTTTACCCGAGCAGGGAGACTTTGTCA TTGTTCATGAGGGACAGACTTTGCTGCTGGATACTGACACGCCAATACTC AGGATGCTGCTCATCCAAGGTAGAACATGTTTTGATGTAGATAAAAAGGC CGGTAAAAGTAGTCTAGTAGCGTTTTTTGAAGACTTGTGGGCAGTGGGTT GTTATCCACCGTGTCTAGGGCACGGTATTGAAAGTCAGAGCCCATCCCTT TCCTTTCACTGCCTTTTAGCTCCCCAACAGAAGTCAGGTACCAATTTTTA CACCCTGGTGGAGTGGGAAAAGTCGTGTTAAGTGCCTTTCTCAAAGACAA AACGTCTTGAAATGCCAGAAATCCAACCTGCCACCTCTGTTTTCAGCCTA GCCACTCGACCATTCGACGTCAGGCGGATGCAGACATGCGATTAAAGCAG AATATTCAATAAGATAAAACACTATGCCCATTCATAGCATTAAGGTTTCG ACTCTCTGAATCTTGGTGGAAAAAGAAAGTGATAACATAACACATCGATC ATACATGTACAGGTGGAACGCTGTTGTTCCATGACGAGGGAGATGTGCAT CTTCAGTCTGAGTACATCCTCATCACGGATGGAGGGACTCTCCAGGTCGG TACAGAGGAGGAACCTTTCCAGCACCAGGCCACCATCACTCTTCACGGTC ACCTTCGCTCAAAGGAGCTGCCCATCTATGGTGCCAAAGTTCTGGGAGTT CGGAACGGAACGCTGGACATACATGGTAACATTTGTTTACATTTGCAACA AGTGGCCAAACAACAGAGCTGTTTTTAAGTGGCAAACCAAACGTCTTACT AGGAGGAGGGCGGAATAGACTTCCCGTTTCGTACGGTCACGTATCAGAAA TGAATTAGACAGTTTTCCTGAAGAAGGTCAAATTTCGTAACTGAACGTTA CCTGCGTTGCATCATCATCATTGGTCGGCTGCTACGCAGGCGACTGTAAG TTTCCAGTTCTTTCTGTCAGCAGCAAGGTTTGCGATTTGTCCAGGTACAA GTATACCGCTGTCGTCACCCAGGAGTTGTTGTGTGTTTCATATTCATGAA ATGACCTGCGTTGCATAAGGAAAGTTGAAACATTGACGATGATTTTCCTT TCCTGTAGGCTCCCCTGTTCCGGTGACGTGGACTCGGCTAGCCCAGACGG CAGCAGCGGGGCAGACAACGCTCGTTCTGGAGCAGCCGGTCACTTGGAAG GCAGGAGACTGCATCG

Coding sequence (CDS) from alignment at Sc0000040:1847324..1849189-

>transcript:BL97131_cuf4 ID=transcript:BL97131_cuf4|Name=transcript:BL97131_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=2220bp|location=Sequence derived from alignment at Sc0000040:1847324..1849189- (Branchiostoma lanceolatum)
GTCTGTGTGACTGAGGCCCACAGTGGAAGCGTGAGGGCTAAAGTTAGGGC
AGAGGGCATTGATGGGATCGCTTCACAGGACTACGCAGACTTCTACTACG
TTGACAGGTGGTCGTCCGTGTACACTTGGGGCGGGGAAAGTTTACCCGAG
CAGGGAGACTTTGTCATTGTTCATGAGGGACAGACTTTGCTGCTGGATAC
TGACACGCCAATACTCAGGATGCTGCTCATCCAAGGTGGAACGCTGTTGT
TCCATGACGAGGGAGATGTGCATCTTCAGTCTGAGTACATCCTCATCACG
GATGGAGGGACTCTCCAGGTCGGTACAGAGGAGGAACCTTTCCAGCACCA
GGCCACCATCACTCTTCACGGTCACCTTCGCTCAAAGGAGCTGCCCATCT
ATGGTGCCAAAGTTCTGGGAGTTCGGAACGGAACGCTGGACATACATGGC
TCCCCTGTTCCGGTGACGTGGACTCGGCTAGCCCAGACGGCAGCAGCGGG
GCAGACAACGCTCGTTCTGGAGCAGCCGGTCACTTGGAAGGCAGGAGACT
GCATCGTCTGTGTGACTGAGGCCCACAGTGGAAGCGTGAGGGCTAAAGTT
AGGGCAGAGGGCATTGATGGGATCGCTTCACAGGACTACGCAGACTTCTA
CTACGTTGACAGGTGGTCGTCCGTGTACACTTGGGGCGGGGAAAGTTTAC
CCGAGCAGGGAGACTTTGTCATTGTTCATGAGGGACAGACTTTGCTGCTG
GATACTGACACGCCAATACTCAGGATGCTGCTCATCCAAGGTGGAACGCT
GTTGTTCCATGACGAGGGAGATGTGCATCTTCAGTCTGAGTACATCCTCA
TCACGGATGGAGGGACTCTCCAGGTCGGTACAGAGGAGGAACCTTTCCAG
CACCAGGCCACCATCACTCTTCACGGTCACCTTCGCTCAAAGGAGCTGCC
CATCTATGGTGCCAAAGTTCTGGGAGTTCGGAACGGAACGCTGGACATAC
ATGGCTCCCCTGTTCCGGTGACGTGGACTCGGCTAGCCCAGACGGCAGCA
GCGGGGCAGACAACGCTCGTTCTGGAGCAGCCGGTCACTTGGAAGGCAGG
AGACTGCATCGTCTGTGTGACTGAGGCCCACAGTGGAAGCGTGAGGGCTA
AAGTTAGGGCAGAGGGCATTGATGGGATCGCTTCACAGGACTACGCAGAC
TTCTACTACGTTGACAGGTGGTCGTCCGTGTACACTTGGGGCGGGGAAAG
TTTACCCGAGCAGGGAGACTTTGTCATTGTTCATGAGGGACAGACTTTGC
TGCTGGATACTGACACGCCAATACTCAGGATGCTGCTCATCCAAGGTGGA
ACGCTGTTGTTCCATGACGAGGGAGATGTGCATCTTCAGTCTGAGTACAT
CCTCATCACGGATGGAGGGACTCTCCAGGTCGGTACAGAGGAGGAACCTT
TCCAGCACCAGGCCACCATCACTCTTCACGGTCACCTTCGCTCAAAGGAG
CTGCCCATCTATGGTGCCAAAGTTCTGGGAGTTCGGAACGGAACGCTGGA
CATACATGGCTCCCCTGTTCCGGTGACGTGGACTCGGCTAGCCCAGACGG
CAGCAGCGGGGCAGACAACGCTCGTTCTGGAGCAGCCGGTCACTTGGAAG
GCAGGAGACTGCATCGTCTGTGTGACTGAGGCCCACAGTGGAAGCGTGAG
GGCTAAAGTTAGGGCAGAGGGCATTGATGGGATCGCTTCACAGGACTACG
CAGACTTCTACTACGTTGACAGGTGGTCGTCCGTGTACACTTGGGGCGGG
GAAAGTTTACCCGAGCAGGGAGACTTTGTCATTGTTCATGAGGGACAGAC
TTTGCTGCTGGATACTGACACGCCAATACTCAGGATGCTGCTCATCCAAG
GTGGAACGCTGTTGTTCCATGACGAGGGAGATGTGCATCTTCAGTCTGAG
TACATCCTCATCACGGATGGAGGGACTCTCCAGGTCGGTACAGAGGAGGA
ACCTTTCCAGCACCAGGCCACCATCACTCTTCACGGTCACCTTCGCTCAA
AGGAGCTGCCCATCTATGGTGCCAAAGTTCTGGGAGTTCGGAACGGAACG
CTGGACATACATGGCTCCCCTGTTCCGGTGACGTGGACTCGGCTAGCCCA
GACGGCAGCAGCGGGGCAGACAACGCTCGTTCTGGAGCAGCCGGTCACTT
GGAAGGCAGGAGACTGCATC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97131gene:BL97131Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97131_cuf4transcript:BL97131_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97131_cuf4-E1BL97131_cuf4-E1-1564476830-204538Branchiostoma lanceolatumexon
BL97131_cuf4-E2BL97131_cuf4-E2-1564476830-204535Branchiostoma lanceolatumexon
BL97131_cuf4-E3BL97131_cuf4-E3-1564476830-204533Branchiostoma lanceolatumexon
BL97131_cuf4-E4BL97131_cuf4-E4-1564476830-204531Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000040genomeSc0000040:1847324..1849189 -
Properties
Property NameValue
Transcript idBL97131_cuf4
Biotypeprotein_coding