transcript:BL97130_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97130_cuf3
Unique Nametranscript:BL97130_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97130_cuf3

>transcript:BL97130_cuf3-protein ID=transcript:BL97130_cuf3-protein|Name=transcript:BL97130_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=234bp
AFNDVQPDSLDMRNAVLKNEYGNTSVPWAMKRMTHKPGWMLVLVGKTTYT
FGFQDSSHITNLTYSGKFYDMKDTDYVIMQHSFTQTPDSFSLAKEDDREE
SAAAISYTGNENKDWYFDEANGKTFSYIVSGKGESSPVDRSVNMQVYRCF
YEDCLPPADPNDVPPDRQRPDDYVTYSTLTWKMDTDGFMVPSSSVIDARR
RRSQVTLQENDDVKVMGVPWLVLGDADLPKLGKL
Run BLAST on NCBI

mRNA from alignment at Sc0000040:1836902..1840870-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97130_cuf3 ID=transcript:BL97130_cuf3|Name=transcript:BL97130_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3969bp|location=Sequence derived from alignment at Sc0000040:1836902..1840870- (Branchiostoma lanceolatum)
GCTTTCAATGATGTCCAGCCGGACTCACTTGACATGAGGAACGCCGTCTT
GAAGAACGAGTACGGCAACACGTCAGTGCCCTGGGCTATGAAGAGGATGA
CTCACAAGCCGGGCTGGATGCTGGTTCTGGTGGGGAAGACGACCTACACC
TTCGGCTTCCAGGACTCTTCCCATATCACCAACCTGACGTACTCAGGGAA
ATTTTACGACATGAAGGTTAGAATATGTATCTTTTTTGGGGGATAGGGGT
ACACGATTTATTTAGATATCACACTAGACTGTGCCAATTGCAAATTGCGC
CCGGCTTTCACGAACTGGCGCCTACTGGCACAAATCGTTGCCATTTGGCG
CCTAAAACTGCGAATTTTTGGAAATGTTTAGAAAAGCTGCCATTCGCAAA
ATAGCGTAAAAGCTGTGAATTACACATACGGCTTATTCCGGCTGTGCAGA
TACAGATACAGATATAGGTCTAGATACAGATACAGATGCAGCTGCAATGC
ATTGGATAGCTTTAAATTTGTGAATCATGAGTAGACCAGCATCAGAACGC
TGTTTGTAACATATTGTTGTTGCAAGCAATTCACAACACATCCTTCCTTT
TATTCGTTCCTTTATTCACTCAATCGTTCATATTCCAGGACACAGACTAC
GTCATAATGCAGCACAGCTTCACGCAGACTCCTGACAGCTTCTCGCTTGC
CAAGGAAGACGACAGGGAGGAGTCTGCGGCAGCTATAAGTTACACCGGCA
ACGAGAACAAGGACTGGTACTTTGATGAGGCAAACGGAAAAACCTTCTCC
TATATAGGTAAAGTTACTAGAATATTCTTCAATCAGTGACTTAATGAGTT
GAGTTATTTACCTTTCTCAATTCAAGTACTTCAGATTTTAAGACACTCAA
TGCCACAGATAGATTTGACTATATATTTAGATGCAACAGCTCATACAGTG
TTAAAATAGGCAAATATATAAAAGATTGTTTTGTTATTAGAAAAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAAAAATAATGATACTCAAAATTAGAAAACTTGAAT
CATGTAAAACCTAAGATAGTCATTTTGATGTAGTGAATAGTTTTATTCCA
TACTCATGTCTTGTTCTATGTTTACTGTTGTTGCCATGCTTTGTACCTGC
TACAATGGTCGCGCAATAAAGTTCTTCTTAATAGGTAACAAGACACGTAC
CTCAAAATGTTCGATCTCTACTGTACATCTTGAACACGAGACTAGGTCAC
TCCGTGATCAAGATGTACAGTAGACATCGAAAATTTGGAGGTGCGTGTCT
TGTTACCTATTAAGCCACTGATTGAATGATATTCTAGTAAGTTGTAATCA
CACGTCGCTGATGAATTTTTGGTATGTGGGTAGGCAAAGGGAATACAAAG
GTCAATGTCAATTTTTGGTGCCCTGGTGTGCGACCTTGGTACTGCAGCAG
AACTTCTGATGTTTGTATCTTCTGTCCTGGACGTGCTCTTGGCTTTTTTT
TCTGAGCCTACACTGATCCATTGTCCCTAATATGTTCCAGTGTCTGGTAA
AGGAGAATCCTCCCCGGTAGACCGAAGCGTGAACATGCAGGTCTACAGAT
GCTTCTATGAAGACTGCCTCCCCCCTGCCGACCCTAACGACGTCCCACCC
GACCGTCAGCGGCCTGACGACTACGTCACGTACTCCACCCTCACCTGGAA
GATGGACACTGACGGTTTCATGGTCCCCAGTTCCTCCGTAATCGACGCGA
GAAGAAGAAGATCTCAAGTTACTCTCCAGGAAAATGATGACGTCAAGGTT
ATGGGAGGTGAGCCAACGGCCAAACTGCTGCCTATTTTTTTTATATTTCC
GTTGCTATAATTTGTATAATTCTAATATGGACTCCATGAAGAATAGTGAT
GAAGAACTAATGGAGATCGTGATAAATCAAACCAAATTAAGCAAATGAAC
AGAACACAACCACACATCAACTTTTCTCAACACCCCTTTCCATAAGAGGC
AGCGACCGCGCTTTAACCGCCGAACTATCAAAGATCTGACAGATTTCTCA
CAAATCTTATTGACAAGGAACGAATTTTGGTTTTGGGTTTTGTGTGTTTT
GTTGTCTTTTAAATCGTACTATAACATCGTGCACCATATTCCAATTATGA
AAACAAGGGTTAAACAAAATACGATTTTGGTCTATGCACGGTTGCTCATC
AGCGATCACCGTCTAATTCTAGTTTTAAGGATTTCATGCCTTCTTACTGA
AGTAGCCATGTAACTCGTTGTATGCATACATACACTAATGTTAACATCTT
GTCTCCTGTGTTAGTGGTGTGTTAGTTTGCTGGTATTATTTTGATTCTTG
ATTCTTGTCTTTTATTTGTTTGTTGTGTCACACTTTTGCTTTGAATCCGC
GGTATATGTGTTGCCTTATTGTATTTTTACTGTGTTTAATTTTTATTTTG
CAAAATGAATGAAAAAAAATTAAAAAATCACACAGTTGGTCTATTCTTTT
AATGCCACTTTTCTGTAGTGCCCTGGTTGGTGCTCGGTGATGCAGATCTA
CCGAAGCTTGGGAAACTCT

Coding sequence (CDS) from alignment at Sc0000040:1836902..1840870-

>transcript:BL97130_cuf3 ID=transcript:BL97130_cuf3|Name=transcript:BL97130_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2808bp|location=Sequence derived from alignment at Sc0000040:1836902..1840870- (Branchiostoma lanceolatum)
GCTTTCAATGATGTCCAGCCGGACTCACTTGACATGAGGAACGCCGTCTT
GAAGAACGAGTACGGCAACACGTCAGTGCCCTGGGCTATGAAGAGGATGA
CTCACAAGCCGGGCTGGATGCTGGTTCTGGTGGGGAAGACGACCTACACC
TTCGGCTTCCAGGACTCTTCCCATATCACCAACCTGACGTACTCAGGGAA
ATTTTACGACATGAAGGACACAGACTACGTCATAATGCAGCACAGCTTCA
CGCAGACTCCTGACAGCTTCTCGCTTGCCAAGGAAGACGACAGGGAGGAG
TCTGCGGCAGCTATAAGTTACACCGGCAACGAGAACAAGGACTGGTACTT
TGATGAGGCAAACGGAAAAACCTTCTCCTATATAGTGTCTGGTAAAGGAG
AATCCTCCCCGGTAGACCGAAGCGTGAACATGCAGGTCTACAGATGCTTC
TATGAAGACTGCCTCCCCCCTGCCGACCCTAACGACGTCCCACCCGACCG
TCAGCGGCCTGACGACTACGTCACGTACTCCACCCTCACCTGGAAGATGG
ACACTGACGGTTTCATGGTCCCCAGTTCCTCCGTAATCGACGCGAGAAGA
AGAAGATCTCAAGTTACTCTCCAGGAAAATGATGACGTCAAGGTTATGGG
AGTGCCCTGGTTGGTGCTCGGTGATGCAGATCTACCGAAGCTTGGGAAAC
TCGCTTTCAATGATGTCCAGCCGGACTCACTTGACATGAGGAACGCCGTC
TTGAAGAACGAGTACGGCAACACGTCAGTGCCCTGGGCTATGAAGAGGAT
GACTCACAAGCCGGGCTGGATGCTGGTTCTGGTGGGGAAGACGACCTACA
CCTTCGGCTTCCAGGACTCTTCCCATATCACCAACCTGACGTACTCAGGG
AAATTTTACGACATGAAGGACACAGACTACGTCATAATGCAGCACAGCTT
CACGCAGACTCCTGACAGCTTCTCGCTTGCCAAGGAAGACGACAGGGAGG
AGTCTGCGGCAGCTATAAGTTACACCGGCAACGAGAACAAGGACTGGTAC
TTTGATGAGGCAAACGGAAAAACCTTCTCCTATATAGTGTCTGGTAAAGG
AGAATCCTCCCCGGTAGACCGAAGCGTGAACATGCAGGTCTACAGATGCT
TCTATGAAGACTGCCTCCCCCCTGCCGACCCTAACGACGTCCCACCCGAC
CGTCAGCGGCCTGACGACTACGTCACGTACTCCACCCTCACCTGGAAGAT
GGACACTGACGGTTTCATGGTCCCCAGTTCCTCCGTAATCGACGCGAGAA
GAAGAAGATCTCAAGTTACTCTCCAGGAAAATGATGACGTCAAGGTTATG
GGAGTGCCCTGGTTGGTGCTCGGTGATGCAGATCTACCGAAGCTTGGGAA
ACTCGCTTTCAATGATGTCCAGCCGGACTCACTTGACATGAGGAACGCCG
TCTTGAAGAACGAGTACGGCAACACGTCAGTGCCCTGGGCTATGAAGAGG
ATGACTCACAAGCCGGGCTGGATGCTGGTTCTGGTGGGGAAGACGACCTA
CACCTTCGGCTTCCAGGACTCTTCCCATATCACCAACCTGACGTACTCAG
GGAAATTTTACGACATGAAGGACACAGACTACGTCATAATGCAGCACAGC
TTCACGCAGACTCCTGACAGCTTCTCGCTTGCCAAGGAAGACGACAGGGA
GGAGTCTGCGGCAGCTATAAGTTACACCGGCAACGAGAACAAGGACTGGT
ACTTTGATGAGGCAAACGGAAAAACCTTCTCCTATATAGTGTCTGGTAAA
GGAGAATCCTCCCCGGTAGACCGAAGCGTGAACATGCAGGTCTACAGATG
CTTCTATGAAGACTGCCTCCCCCCTGCCGACCCTAACGACGTCCCACCCG
ACCGTCAGCGGCCTGACGACTACGTCACGTACTCCACCCTCACCTGGAAG
ATGGACACTGACGGTTTCATGGTCCCCAGTTCCTCCGTAATCGACGCGAG
AAGAAGAAGATCTCAAGTTACTCTCCAGGAAAATGATGACGTCAAGGTTA
TGGGAGTGCCCTGGTTGGTGCTCGGTGATGCAGATCTACCGAAGCTTGGG
AAACTCGCTTTCAATGATGTCCAGCCGGACTCACTTGACATGAGGAACGC
CGTCTTGAAGAACGAGTACGGCAACACGTCAGTGCCCTGGGCTATGAAGA
GGATGACTCACAAGCCGGGCTGGATGCTGGTTCTGGTGGGGAAGACGACC
TACACCTTCGGCTTCCAGGACTCTTCCCATATCACCAACCTGACGTACTC
AGGGAAATTTTACGACATGAAGGACACAGACTACGTCATAATGCAGCACA
GCTTCACGCAGACTCCTGACAGCTTCTCGCTTGCCAAGGAAGACGACAGG
GAGGAGTCTGCGGCAGCTATAAGTTACACCGGCAACGAGAACAAGGACTG
GTACTTTGATGAGGCAAACGGAAAAACCTTCTCCTATATAGTGTCTGGTA
AAGGAGAATCCTCCCCGGTAGACCGAAGCGTGAACATGCAGGTCTACAGA
TGCTTCTATGAAGACTGCCTCCCCCCTGCCGACCCTAACGACGTCCCACC
CGACCGTCAGCGGCCTGACGACTACGTCACGTACTCCACCCTCACCTGGA
AGATGGACACTGACGGTTTCATGGTCCCCAGTTCCTCCGTAATCGACGCG
AGAAGAAGAAGATCTCAAGTTACTCTCCAGGAAAATGATGACGTCAAGGT
TATGGGAGTGCCCTGGTTGGTGCTCGGTGATGCAGATCTACCGAAGCTTG
GGAAACTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97130gene:BL97130Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97130_cuf3transcript:BL97130_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97130_cuf3-E1BL97130_cuf3-E1-1564476830-204525Branchiostoma lanceolatumexon
BL97130_cuf3-E2BL97130_cuf3-E2-1564476830-204523Branchiostoma lanceolatumexon
BL97130_cuf3-E3BL97130_cuf3-E3-1564476830-204521Branchiostoma lanceolatumexon
BL97130_cuf3-E4BL97130_cuf3-E4-1564476830-204519Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000040genomeSc0000040:1836902..1840870 -
Properties
Property NameValue
Transcript idBL97130_cuf3
Biotypeprotein_coding