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transcript:BL97129_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97129_cuf2
Unique Nametranscript:BL97129_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97129_cuf2

>transcript:BL97129_cuf2-protein ID=transcript:BL97129_cuf2-protein|Name=transcript:BL97129_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=138bp
WPDNPYLGNVRIILHGDHNTPEMPVPNGPNVGAKAIGVFGGLDLFGKDRN
VCWTHLAQTAAAGADTITLADAVDWQVDEEIVITTTSFDAWQTETFKISD
VSADGRTLTLNSSLAYEHIYHSDTVDGKSYTMAAEVGL
Run BLAST on NCBI

mRNA from alignment at Sc0000040:1834511..1835945-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97129_cuf2 ID=transcript:BL97129_cuf2|Name=transcript:BL97129_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=1435bp|location=Sequence derived from alignment at Sc0000040:1834511..1835945- (Branchiostoma lanceolatum)
TGGCCAGATAACCCGTATCTTGGCAACGTCCGCATCATTCTCCATGGTGA CCACAACACCCCGGAGATGCCTGTACCAAACGGTCCGAACGTTGGAGCGA AGGCAATAGGTGGGGGTCGTCTAAGTACTCATGGGTTCACAATGACTGGC ACTTTTTGCAGGTCTTTGACAGATTTTTGTCATAAGTTAATGTTAGCCAA TCAAACAAAATACACACATACAGCTTTATTGACGCAACGAAAAGAACAGT GGCTTTCGTGCGGTCAACTACAAGCTACAAAATAGAAATCTTAAAAGTCA ACTAGTTAAGAAATGCAAGCTGATATGAATACGTATATGCAGTCATTAAT TGTTATTTTGTGTGACCCGTATATTTGTTGTTCAGGTGTGTTTGGAGGCC TGGACCTGTTCGGTAAGGACAGGAACGTGTGCTGGACTCACCTGGCACAG ACAGCTGCGGCAGGTGCAGACACCATCACACTAGCAGACGCCGTGGACTG GCAGGTGGATGAGGAAATAGTCATCACCACGTAAGGAAATCTCACTTGAT GTCTTTCAAACTAAGGCCTGAAGATACTGATTGCTCTGATGTAACTTATT GCAACTGTAACCAAACATCAAATACCTCAGAGTCAAAAGCACAATATCAA GCAGACAAAGCACAACCAAAAACATCAGCGAGAGACCCTCAGAAAATCCA TTGACTTCCCCGAACACAATGTCTTATTAGAACTTTAATGATGTAATATG TATCTTTATTATATTTTGTCTGGCCCTTCATGGCATCAATGGAAAGCGAC CTGCAGGCCGATTTGAGCTTCTAATTAATAAACAAAGTTCAAACAAAATG TATACTACTAGTAGATCCGTGATCGTCTGTAAACATGCCCCTCACAATGT CTGGTGGACATTCACTCCGGAGAGGATACAAAGTCTTATGTATAGGATTG TGACAGTAGAGGTGACTTGCTGGGATTTACGTGCTCTTACTTACCATCTA ATGCAGAACCAGTTTCGACGCTTGGCAGACGGAGACGTTTAAGATCAGCG ATGTCTCTGCAGACGGCAGAACGCTCACCCTGAACTCCAGCCTTGCCTAT GAACATATCTGTGAGTTGAAGTCGTACATGGTCTTTTAAGGTATCACTTT ATCATCAGGCACAAAGGTTGTGACCTAGGTAGCTTTTATCACTCCAAAGT CCAAAGTCAATTGGTACAGAAATAAAGAACCACAGCTCAGCTCACAAAGA TGTCTTTACTGTGCCATTAACTGAATAAAAACAAGCATCGGGACATCCAA GCACAAGACTCTTGTACATGAATCATACTTTATAATGCATTTTCTAGTAT AAAAAAAATCCGTTCCTATCACAATAGACCACAGCGACACGGTGGACGGA AAGTCCTACACCATGGCAGCGGAGGTGGGTCTCCT

Coding sequence (CDS) from alignment at Sc0000040:1834511..1835945-

>transcript:BL97129_cuf2 ID=transcript:BL97129_cuf2|Name=transcript:BL97129_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1656bp|location=Sequence derived from alignment at Sc0000040:1834511..1835945- (Branchiostoma lanceolatum)
TGGCCAGATAACCCGTATCTTGGCAACGTCCGCATCATTCTCCATGGTGA
CCACAACACCCCGGAGATGCCTGTACCAAACGGTCCGAACGTTGGAGCGA
AGGCAATAGGTGTGTTTGGAGGCCTGGACCTGTTCGGTAAGGACAGGAAC
GTGTGCTGGACTCACCTGGCACAGACAGCTGCGGCAGGTGCAGACACCAT
CACACTAGCAGACGCCGTGGACTGGCAGGTGGATGAGGAAATAGTCATCA
CCACAACCAGTTTCGACGCTTGGCAGACGGAGACGTTTAAGATCAGCGAT
GTCTCTGCAGACGGCAGAACGCTCACCCTGAACTCCAGCCTTGCCTATGA
ACATATCTACCACAGCGACACGGTGGACGGAAAGTCCTACACCATGGCAG
CGGAGGTGGGTCTCTGGCCAGATAACCCGTATCTTGGCAACGTCCGCATC
ATTCTCCATGGTGACCACAACACCCCGGAGATGCCTGTACCAAACGGTCC
GAACGTTGGAGCGAAGGCAATAGGTGTGTTTGGAGGCCTGGACCTGTTCG
GTAAGGACAGGAACGTGTGCTGGACTCACCTGGCACAGACAGCTGCGGCA
GGTGCAGACACCATCACACTAGCAGACGCCGTGGACTGGCAGGTGGATGA
GGAAATAGTCATCACCACAACCAGTTTCGACGCTTGGCAGACGGAGACGT
TTAAGATCAGCGATGTCTCTGCAGACGGCAGAACGCTCACCCTGAACTCC
AGCCTTGCCTATGAACATATCTACCACAGCGACACGGTGGACGGAAAGTC
CTACACCATGGCAGCGGAGGTGGGTCTCTGGCCAGATAACCCGTATCTTG
GCAACGTCCGCATCATTCTCCATGGTGACCACAACACCCCGGAGATGCCT
GTACCAAACGGTCCGAACGTTGGAGCGAAGGCAATAGGTGTGTTTGGAGG
CCTGGACCTGTTCGGTAAGGACAGGAACGTGTGCTGGACTCACCTGGCAC
AGACAGCTGCGGCAGGTGCAGACACCATCACACTAGCAGACGCCGTGGAC
TGGCAGGTGGATGAGGAAATAGTCATCACCACAACCAGTTTCGACGCTTG
GCAGACGGAGACGTTTAAGATCAGCGATGTCTCTGCAGACGGCAGAACGC
TCACCCTGAACTCCAGCCTTGCCTATGAACATATCTACCACAGCGACACG
GTGGACGGAAAGTCCTACACCATGGCAGCGGAGGTGGGTCTCTGGCCAGA
TAACCCGTATCTTGGCAACGTCCGCATCATTCTCCATGGTGACCACAACA
CCCCGGAGATGCCTGTACCAAACGGTCCGAACGTTGGAGCGAAGGCAATA
GGTGTGTTTGGAGGCCTGGACCTGTTCGGTAAGGACAGGAACGTGTGCTG
GACTCACCTGGCACAGACAGCTGCGGCAGGTGCAGACACCATCACACTAG
CAGACGCCGTGGACTGGCAGGTGGATGAGGAAATAGTCATCACCACAACC
AGTTTCGACGCTTGGCAGACGGAGACGTTTAAGATCAGCGATGTCTCTGC
AGACGGCAGAACGCTCACCCTGAACTCCAGCCTTGCCTATGAACATATCT
ACCACAGCGACACGGTGGACGGAAAGTCCTACACCATGGCAGCGGAGGTG
GGTCTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97129gene:BL97129Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97129_cuf2transcript:BL97129_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97129_cuf2-E1BL97129_cuf2-E1-1564476830-204513Branchiostoma lanceolatumexon
BL97129_cuf2-E2BL97129_cuf2-E2-1564476830-204511Branchiostoma lanceolatumexon
BL97129_cuf2-E3BL97129_cuf2-E3-1564476830-204509Branchiostoma lanceolatumexon
BL97129_cuf2-E4BL97129_cuf2-E4-1564476830-204507Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000040genomeSc0000040:1834511..1835945 -
Properties
Property NameValue
Transcript idBL97129_cuf2
Biotypeprotein_coding