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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97126_cuf2 >transcript:BL97126_cuf2-protein ID=transcript:BL97126_cuf2-protein|Name=transcript:BL97126_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=255bp
MLPNPLNQTSFDEVQNSSAVELLNSSYSIPGKHHPELREFVSSVIFPRCN
VTEEDISNSTLRPFSNTTTPCMGTQLLPCRSWCEEVLSMGDDLMKDLLPP
CDVFPSSQHGCWNPEPPVKGTEVCYHGTGINYHGTWSTTTSGAKCLEWSA
PQANYYTTEHPWANLDKNYCRNPTGVHRPFCLSEDGSEEECDVIPCNAVG
CSDRGPPSYGKRSPSKRFYLLEEKVTYTCNDGYTIEYGYPREVRCLEGNN
GQGNW Run BLAST on NCBI mRNA from alignment at Sc0000297:282126..285937- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97126_cuf2 ID=transcript:BL97126_cuf2|Name=transcript:BL97126_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3812bp|location=Sequence derived from alignment at Sc0000297:282126..285937- (Branchiostoma lanceolatum)
TGACCCTGTGTGAAGTCCTAATATCGGGTAGACCTTCGCCACATTCAGCG
TGTTTCAACCACGAAATCAAATTTATGAATATGTTAAACGCTTAAGAAAT
TAACAGTTTCCAGCATACTGGTATGTTTGCTGGCGAGATTGGAATGGTTT
GCATCAAGGACATGTCCTTTTTTAACAACCTATGACTGACATTTTGCAGA
CTTTTTATCCGTGATATGGAACTTTAATTTCCATGAATCATATTCTTGAA
ATAAGACACCTTTTGACAAAAAAAAACATTTAGCCGTGGGTATATATTAC
CTTGATGGTGACATAGTCAATTTGTTGCAAATCAATTCATGCATGTGATG
TTGTGGATCTATCTATGCAATATTTGTGGTAGTAAATTCCTTTTCATTTC
TAGTTTATGCTTTGTAACACTATCTTCTAAAAAGAGGACAACTGACAGCT
GAAAGAACAGGCATATATGATACATTCTTCGTTATGCCACGTTAGGGGTG
TTGAATTATGTATAACCTTTATGAAAAATTAGATTTAAAAACTCTTGCAA
CTTGTGTTAGTTGGCTGTTTACCTGTTGATTCTTGATTACTTTTTCATTC
GTTTGTTGTCATACTTTTGCTTTGGATCCGTGGTTTATGTGTTGTCTTAT
TGTATTATTATTCTGTTTATTTGTTATTTTGCAAAATGAAAAAAAACAAG
AAAAAAAAAACTCTTGCAACTTTTTTTCTTTGCCACTCTCTTTCGCGCGT
TTGCATCTGGTTTAGGGTGTCCAGAGGATGTCATCCATAAAATCAGGTCA
ATGCGGTAGACTGAACGGCATTAATTAGAAGTTGTTGCTATTCTCAGGCC
TGGAAATCATGTGCCTCCGTGGATACTTCCGCTGTGGAGACAAATCCACA
TGCATCCTGTCATGGAAGCGTTGTGACGGGATCTCAGACTGTTCGGACGG
GAGTGACGAGGAAAACTGTGGTAAGTTACTGTCGTAGAGTCACTGATCAT
AATTAAGTGGCATGATAAGTACCCTAAGTACCCACACGGCACATAGGAGC
GTAGATACAGTCAAACCTGGTCTCATGAGCTATTCTGCAACTTCCGGCGT
TTGTTGGATTTATCATCTCTCAGTGCACAATTCAACATCTAAGAAATATC
TTGATGTACAAAACTTTATGGTATAGCAATTTGGTTATGAAATTCTTTAC
TGATCATCAATGAGTAAATATACATTTCACATTAAAGTTTTCACGTGAAT
CTGAACAATCCATGTTGAAACATGAAACACACATTTACAGTATAAAGGAT
ATATTTTCTGTCCACACACACCATACTAAGCAACAATGCTCTTTTCCTAA
TAGCTAAGTTCAGACCGAAAATGTCTCATCCTGAAGTAGCCGCAATAGAC
ATGGATAAATAAGATAAATAAAGTGATAGTCATTTGATACAATTTTCAGT
GTGCCTTCGAATTCCTGAGAGTTTTCAGCTNGCCTCCGAATTCCTGAGAG
TTTTCAGCTCGACAGTAGACTCACAATGCTACCAAACCCGCTGAACCAGA
CGAGCTTCGACGAGGTACAGAATTCCTCTGCCGTGGAGCTTCTCAACAGT
TCCTACAGCATCCCGGGGAAACACCATCCAGAGTTACGAGAATTCGTATC
CTCCGTTATATTTCCGCGATGCAATGTGACTGAAGAGGACATATCCAACA
GTACTTTGCGTCCCTTTTCAAACACCACTACCCCGTGCATGTAAGTAGTC
AATGTGCCTATTGGAGTAGATCATCACAAACTGCGGCAATGGTATCTTAC
TCAGCCGATATGATGACAACCAGTTACTTTTCAGGGATATTGACCATCTG
CCATTGATGCATTCATACTCATGTTTCTAATGCATACATTTTCTTCAATT
TCAAAGTATAATTATATGATGTTTTCATAGACATACGTGGAAGATAGTGA
ACATTGTATTTAGATATATATTTGCTCACAATGTCCATCGGCTGGCACTG
AATTCACTTGTGTTTCTTAGGGGTACTCAACTGCTACCATGCCGTTCGTG
GTGTGAGGAAGTGTTGAGTATGGGGGATGATCTGATGAAGGACCTGCTGC
CGCCATGTGATGTCTTCCCGTCATCACAGCACGGTTGTTGGAACCCTGAG
CCACCCGTGAAGGGCACAGAAGGTAAGAAAATTTCAAGCAATGATTTTAT
CTATGTAAGGCATTTACATTTTCCTACCTTTTGGATGATGGAATCAGGTC
AGGTCAGGTCGGGTGTATGTGTTTAAATTTGTTTGTTTGTTTGTTTGTAG
TTGGTTGGTTTGTTGGTTAGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTT
GGTTGGTTGGTTGGTTGGTTGGTTAACAGCGTAACTCAAGAAGTCGTGGA
TGGATCTTTGTGATAAATGGTACGTTGGTAGACGTTGGCAAAAGAAATAA
ACCATTAGATTGTGGACCCCCAACAGCGGCTTTCGATGGTACGGAGGAAT
GGAAGTTTAGATATCTCGTGTTTACGGTCGTGCTGTTTGAGTGATAGATA
GCTCTTCAGGCAGAGAGTAAGTCACGTAGCTTTGGGTCCCATAGCGGCTT
TCTTTGGATCTGAAGTGGGTTTTTCAACCCGGATAATGATTAACACAATT
AGATGCATATTGTGCAAATCAAGAGACAATGTACATAATTAATGAGAAAG
CTTTAAGACTTGTAATTCAGTTGCATTCCATGCTAAGGCTTTCGTACGTA
ACTTAGATAGGTGGACTTCTGGGAGACTTATGCAAGAAGACCTTATTGGC
ATAACTAAAGAGACATAAGTGGAATTCATGATCAATATCTGTAAATGACT
GACATTTCATACCTTAGAAGTGCGAAAAGGCGGTAAAGGCTAACAGTGCT
AGACATCAATTATGCAAATGATGGTCTTATCTAATTTTGCATAGTCAATG
TAGAAATGCTTCGACGCCCGTTGCAACGTATAATTAATGGGGTATAGTCC
ATCACCCCATAGCACTTAGTGGTACAGTCAGGATAATAGCTGGTGAAGGT
ATAAGGTCGTTGAATTCTAGTTAAGAAATTCACCATTTTGTGAGTTTTTT
AAAAACAAAGCAGATCAATGATTTTCTTTCTTTTTCCTCAGTTTGCTACC
ATGGCACTGGTATAAACTACCATGGAACATGGAGCACAACTACTTCCGGG
GCAAAATGTCTTGAGTGGTCGGCTCCGCAAGCTAATTACTACACGACTGA
GCACCCCTGGGCTAACCTGGACAAGAACTACTGCCGCAATCCTACAGGTG
TCCATCGACCATTTTGTTTATCTGAAGACGGTAGCGAGGAGGAATGTGAC
GTCATTCCATGTAGTAAGTTGATTTGTCGAATGGGAATATGTCCCCTAAG
AGGCCAAACAGAGTTCAGTTACTGCCATCCCCATGTTAATTTTTATATCA
ATTTTTTTTGGCATGGAAAACAATCATAACAGATGTTATGTGGGTTTTTT
TAGAATTATACTTGTTGGATCTTTCTGTTTTCTATGTCATCTAATCCAAT
GGAGGACATGATTTTTACAATGGCTGCAGTATTTTATATCATACTACATG
TACATTCAATAATCACAATAATTATACTACATTTAGATGCAGTTGGCTGT
TCGGACAGGGGTCCTCCGAGCTACGGCAAGAGAAGTCCAAGCAAGAGGTT
CTACCTCCTGGAAGAAAAGGTTACATACACCTGCAACGATGGCTATACTA
TTGAGTACGGTTATCCTAGGGAAGTGAGGTGCCTTGAAGGAAACAATGGA
CAAGGCAATTGG Coding sequence (CDS) from alignment at Sc0000297:282126..285937- >transcript:BL97126_cuf2 ID=transcript:BL97126_cuf2|Name=transcript:BL97126_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=3060bp|location=Sequence derived from alignment at Sc0000297:282126..285937- (Branchiostoma lanceolatum)
ATGCTACCAAACCCGCTGAACCAGACGAGCTTCGACGAGGTACAGAATTC
CTCTGCCGTGGAGCTTCTCAACAGTTCCTACAGCATCCCGGGGAAACACC
ATCCAGAGTTACGAGAATTCGTATCCTCCGTTATATTTCCGCGATGCAAT
GTGACTGAAGAGGACATATCCAACAGTACTTTGCGTCCCTTTTCAAACAC
CACTACCCCGTGCATGGGTACTCAACTGCTACCATGCCGTTCGTGGTGTG
AGGAAGTGTTGAGTATGGGGGATGATCTGATGAAGGACCTGCTGCCGCCA
TGTGATGTCTTCCCGTCATCACAGCACGGTTGTTGGAACCCTGAGCCACC
CGTGAAGGGCACAGAAGTTTGCTACCATGGCACTGGTATAAACTACCATG
GAACATGGAGCACAACTACTTCCGGGGCAAAATGTCTTGAGTGGTCGGCT
CCGCAAGCTAATTACTACACGACTGAGCACCCCTGGGCTAACCTGGACAA
GAACTACTGCCGCAATCCTACAGGTGTCCATCGACCATTTTGTTTATCTG
AAGACGGTAGCGAGGAGGAATGTGACGTCATTCCATGTAATGCAGTTGGC
TGTTCGGACAGGGGTCCTCCGAGCTACGGCAAGAGAAGTCCAAGCAAGAG
GTTCTACCTCCTGGAAGAAAAGGTTACATACACCTGCAACGATGGCTATA
CTATTGAGTACGGTTATCCTAGGGAAGTGAGGTGCCTTGAAGGAAACAAT
GGACAAGGCAATTGGATGCTACCAAACCCGCTGAACCAGACGAGCTTCGA
CGAGGTACAGAATTCCTCTGCCGTGGAGCTTCTCAACAGTTCCTACAGCA
TCCCGGGGAAACACCATCCAGAGTTACGAGAATTCGTATCCTCCGTTATA
TTTCCGCGATGCAATGTGACTGAAGAGGACATATCCAACAGTACTTTGCG
TCCCTTTTCAAACACCACTACCCCGTGCATGGGTACTCAACTGCTACCAT
GCCGTTCGTGGTGTGAGGAAGTGTTGAGTATGGGGGATGATCTGATGAAG
GACCTGCTGCCGCCATGTGATGTCTTCCCGTCATCACAGCACGGTTGTTG
GAACCCTGAGCCACCCGTGAAGGGCACAGAAGTTTGCTACCATGGCACTG
GTATAAACTACCATGGAACATGGAGCACAACTACTTCCGGGGCAAAATGT
CTTGAGTGGTCGGCTCCGCAAGCTAATTACTACACGACTGAGCACCCCTG
GGCTAACCTGGACAAGAACTACTGCCGCAATCCTACAGGTGTCCATCGAC
CATTTTGTTTATCTGAAGACGGTAGCGAGGAGGAATGTGACGTCATTCCA
TGTAATGCAGTTGGCTGTTCGGACAGGGGTCCTCCGAGCTACGGCAAGAG
AAGTCCAAGCAAGAGGTTCTACCTCCTGGAAGAAAAGGTTACATACACCT
GCAACGATGGCTATACTATTGAGTACGGTTATCCTAGGGAAGTGAGGTGC
CTTGAAGGAAACAATGGACAAGGCAATTGGATGCTACCAAACCCGCTGAA
CCAGACGAGCTTCGACGAGGTACAGAATTCCTCTGCCGTGGAGCTTCTCA
ACAGTTCCTACAGCATCCCGGGGAAACACCATCCAGAGTTACGAGAATTC
GTATCCTCCGTTATATTTCCGCGATGCAATGTGACTGAAGAGGACATATC
CAACAGTACTTTGCGTCCCTTTTCAAACACCACTACCCCGTGCATGGGTA
CTCAACTGCTACCATGCCGTTCGTGGTGTGAGGAAGTGTTGAGTATGGGG
GATGATCTGATGAAGGACCTGCTGCCGCCATGTGATGTCTTCCCGTCATC
ACAGCACGGTTGTTGGAACCCTGAGCCACCCGTGAAGGGCACAGAAGTTT
GCTACCATGGCACTGGTATAAACTACCATGGAACATGGAGCACAACTACT
TCCGGGGCAAAATGTCTTGAGTGGTCGGCTCCGCAAGCTAATTACTACAC
GACTGAGCACCCCTGGGCTAACCTGGACAAGAACTACTGCCGCAATCCTA
CAGGTGTCCATCGACCATTTTGTTTATCTGAAGACGGTAGCGAGGAGGAA
TGTGACGTCATTCCATGTAATGCAGTTGGCTGTTCGGACAGGGGTCCTCC
GAGCTACGGCAAGAGAAGTCCAAGCAAGAGGTTCTACCTCCTGGAAGAAA
AGGTTACATACACCTGCAACGATGGCTATACTATTGAGTACGGTTATCCT
AGGGAAGTGAGGTGCCTTGAAGGAAACAATGGACAAGGCAATTGGATGCT
ACCAAACCCGCTGAACCAGACGAGCTTCGACGAGGTACAGAATTCCTCTG
CCGTGGAGCTTCTCAACAGTTCCTACAGCATCCCGGGGAAACACCATCCA
GAGTTACGAGAATTCGTATCCTCCGTTATATTTCCGCGATGCAATGTGAC
TGAAGAGGACATATCCAACAGTACTTTGCGTCCCTTTTCAAACACCACTA
CCCCGTGCATGGGTACTCAACTGCTACCATGCCGTTCGTGGTGTGAGGAA
GTGTTGAGTATGGGGGATGATCTGATGAAGGACCTGCTGCCGCCATGTGA
TGTCTTCCCGTCATCACAGCACGGTTGTTGGAACCCTGAGCCACCCGTGA
AGGGCACAGAAGTTTGCTACCATGGCACTGGTATAAACTACCATGGAACA
TGGAGCACAACTACTTCCGGGGCAAAATGTCTTGAGTGGTCGGCTCCGCA
AGCTAATTACTACACGACTGAGCACCCCTGGGCTAACCTGGACAAGAACT
ACTGCCGCAATCCTACAGGTGTCCATCGACCATTTTGTTTATCTGAAGAC
GGTAGCGAGGAGGAATGTGACGTCATTCCATGTAATGCAGTTGGCTGTTC
GGACAGGGGTCCTCCGAGCTACGGCAAGAGAAGTCCAAGCAAGAGGTTCT
ACCTCCTGGAAGAAAAGGTTACATACACCTGCAACGATGGCTATACTATT
GAGTACGGTTATCCTAGGGAAGTGAGGTGCCTTGAAGGAAACAATGGACA
AGGCAATTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000297 | genome | Sc0000297:282126..285937 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97126_cuf2 |
| Biotype | protein_coding |
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