transcript:BL97124_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97124_cuf0
Unique Nametranscript:BL97124_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97124_cuf0

>transcript:BL97124_cuf0-protein ID=transcript:BL97124_cuf0-protein|Name=transcript:BL97124_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=280bp
FTATLIIVCMGLMGLFLFFTLAVIFIHDKEGRLSPVARVLFLRYMARMLL
LGDLTKKIEASMDTAAGEDPLTIHPAVELSNIAIDHDDDDVTADDGESVA
ENEMGTAVDEDSLTVHPAVEPTNIAIDDDDVTADDGESIASAEILLWSGV
DPAMTSKSPTGLESAGSPGFLHLISSVDELTQAVKKGNEEMTKAVKKGNE
EMTKAVTNGMERITERLTEELTEGMAKLKNEIEELTKAVKNEEVVPDYTL
LTKVLDRLCLVLYVIGIAAAIPMTMFLSKY
Run BLAST on NCBI

mRNA from alignment at Sc0000297:276573..279839-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97124_cuf0 ID=transcript:BL97124_cuf0|Name=transcript:BL97124_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3267bp|location=Sequence derived from alignment at Sc0000297:276573..279839- (Branchiostoma lanceolatum)
TTTCACAGCCACGCTGATCATCGTGTGCATGGGCCTGATGGGACTCTTCC TCTTCTTCACCTTGGCCGTCATCTTTATTCACGACAAAGAGGGACGGCTG TCTCCAGTGGCGAGGGTTCTCTTTCTCCGCTACATGGCAAGGTACTGAAT ATTTGTCTCCATATCATTTCTGTCCATGATCATATCGGTTTTACGACTTC TTAACTTTCTACGACGTCAAGAAAGAACGATTATAGTACAAACAAAAAGT ATTTCTTTCTAAGACGTCAAGAAAGAACTTAATGTTTTACCACGGGGAAC GTACCGCCCTATTCTATTCATCACATCCACCAAAGAGTACTTCAATCATC GCTGTTTCATTGATCCTCCATTCTTTAACTTAGCCTACAATTTTGAATGG CTGTTTAATGAGTCAATGCCTTGGTCTCTGAGAAAAGACGGAGAAGATTT TGGCAATATCTTGATAATCATGTCTTATACATATATATATGACAATGCTA GCTATAGTCCTCCACACTTTCTTGTAAACTGCAGATTTCTTACCAACTGC AGATTACAGGTTTACAAGTGCCATGTTGCTTTGTAGACACAGCTTCACAC ATATGCAACAAATTCATTTTGTTTATTGTACCATCTATAAAGGATGCTCC TTCTGGGAGATCTCACAAAGAAGATAGAAGCCAGCATGGATACCGCGGCC GGTGAGGATCCCCTGACCATCCACCCTGCCGTAGAGCTGTCAAACATTGC CATTGATCATGACGACGATGACGTAACAGCGGACGATGGAGAAAGTGTCG CTGAAAATGAAATGGGCACCGCGGTCGATGAGGATTCCCTGACCGTCCAC CCTGCCGTAGAGCCGACAAACATCGCCATTGACGACGATGACGTGACGGC AGACGATGGAGAAAGTATCGCTAGCGCTGAAATATTGCTGTGGAGTGGCG TTGACCCTGCGATGACATCAAAGTCTCCTACAGGTCTCGAGTCCGCTGGA TCTCCGGGCTTTCTTCACCTGATCTCCAGCGTGGATGAGCTGACTCAGGC GGTAAAGAAAGGGAACAAGGAGATAACCAATGCGGTAATGAAAGGAAACG AGGAAATGACCAAGGCTGTAAAGAAAGGGAACGAAGAGCTGACCAAGGCG GTAAAGAAAGGGAACGAGGAGATGACCAAGGCGGTAAAGAAAGGGAACGA GGAGATGACCAAGGCGGTAACCAACGGGATGGAGAGGATCACCGAGAGGC TGACTGAGGAGCTGACAGAGGGGATGGCCAAGCTAAAGAACGAGATAGAG GAGCTGACCAAGGCGGTAAAGAACGAGGAGGTGGTTCCCGACTACACCCT GTTGACTAAGGTCTTGGACAGGCTGTGCCTTGTCTTGTACGTCATCGGCA TCGCCGCAGCCATTCCGATGACCATGTTTTTGAGCAAGTATTAAAAGAGC GGTATCTAGCTCATAAGGCAATAAGATATGGAGGCTGTGATACCCATACC TTAATCCTTTTGTCAAACTATCTGTGCACAATTGTCAGCAAAATAGTAGC CCTGTGCTTGTAAAACAACTGTTATTTTAGCATGATTTTTCTAATGAAAT TGTAATTTTTCAACAGTCGTCTTGTAAGATATGCTAGCCTGACATTGTTG TGTGATAAGATATGTGTAAAACCTTTCTTTACCATACTTCTATCATGAGC TTAACAACGTGGTTTTACGATTCTTTTCCATTCTGTATTAATATTTGGCA TTTGTCATTGACAGATATTGTGTTTGGGTTTTCGATAAAAAGCATTTGTG TTACTTGAAGAGTGTGTATGATGATGTGAAAAATGCAGCAAACACTGCGC CGCCAATTTGAAATTATCAATGACCAAGAAGATTATTGATGAGTGTTTTG TAGTATTTTACCTAATGTTTTATGTGTTTGAAACGTGGTATTATGATAGC CAATTGCCCATCTGAGAAATAATAAATGTCATGATGGTCAACTCTGCTAC TGCAATGTAAAATACTTATATTTGTAAATAATTTTTAACATCTGATCTAA CTTCTGTTTGAATCACACATAACTTATAACCTGCCTGTTTACTTGTGATT TTAGAATATGTGTGTTGTTAAATAGGAACGATAATATTATTGTAAATTGC CTAGGTCAACAGTTTTTAAGTAACATACTGTATGTAAAAAAGTGCAATTC AGGCTATGGCTGCGATGTACTTTTCATATTGGATCAAAATTATCAAATAC TCATTCATTCATTCACACATAAGCACAAGTAACCATGTACTTGAAGTAAA CAGCTTATTTAATGTTTGCCATATACATTGTAGGGTGGGATGTCCACAAC TCAACTTAGATGTAACCTACTCTGGAAAACGTCCATCCCCGAAAATGTAA GTCTAACCTTACAGTCTGAAAAACCGTACACGAAAAAGCAACTAATGTAG TTGCTAGAAGAACATCAAGAAGAGTTCACTAAATGAAACTATTGTGCCTT TCTTATAAACATTATCTATTAAATGAGTATACATCTTGAGTACACAAAAG ATATTGTCATAGACTTAGACCAAATCATTTGAACATAACATACTATGCAC ATCTGGACAATACAATGCATTACACCAGGACAATGTGTATTTTGGTGGGT CATCTTCATCCTGCTAGAGTTTACTGCAATGTAGCTTGATATCCTACATT TAATCTGTACAACACTCTATGTTTGATATGCTGCTAGGTAACAGTTTTTG CATGCAACTAGTGGAGGGACTTTGCTAGTCGAGCATACATTATAATGTTT CACCGTCATGTAATATTACACTTCAACACAACTCTGTAAAACCTGCCGAC TTCATTTACAGCAACATCATATTGTTTAAGATAACAAGATTTTTGTATGA ATATCTGCGCTGCAAGATAATTAATATCTTTCAGCTTTTAGTATTGTTAG TGTGTGAAGTTTTGATTTGGTTGACAATAAATGATATGAACCTCGTACCC TATGGTCTATGGTGTCTTAAGAGTCATTGCACGAGAAAACCAGGCAAAAC CAGGCAGAGGTGGGAATATGGGGGTCGGCCAAATCGACTCATACTCTGTA TGTGTGATAGGTATGTGGAACTATGAACAGCCATATAATTAAAACCCTCC AGCTATTTTTCGTTATGGCGTTCTGGGACCCCCCTCCGAGTCCCTCCAAA ATCCAACAATTTATGGTTAAAAATTACTGAAATTGCGATGGCCACTCTGA TAATTAAAAGGAAGATA

Coding sequence (CDS) from alignment at Sc0000297:276573..279839-

>transcript:BL97124_cuf0 ID=transcript:BL97124_cuf0|Name=transcript:BL97124_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2529bp|location=Sequence derived from alignment at Sc0000297:276573..279839- (Branchiostoma lanceolatum)
TTCACAGCCACGCTGATCATCGTGTGCATGGGCCTGATGGGACTCTTCCT
CTTCTTCACCTTGGCCGTCATCTTTATTCACGACAAAGAGGGACGGCTGT
CTCCAGTGGCGAGGGTTCTCTTTCTCCGCTACATGGCAAGGATGCTCCTT
CTGGGAGATCTCACAAAGAAGATAGAAGCCAGCATGGATACCGCGGCCGG
TGAGGATCCCCTGACCATCCACCCTGCCGTAGAGCTGTCAAACATTGCCA
TTGATCATGACGACGATGACGTAACAGCGGACGATGGAGAAAGTGTCGCT
GAAAATGAAATGGGCACCGCGGTCGATGAGGATTCCCTGACCGTCCACCC
TGCCGTAGAGCCGACAAACATCGCCATTGACGACGATGACGTGACGGCAG
ACGATGGAGAAAGTATCGCTAGCGCTGAAATATTGCTGTGGAGTGGCGTT
GACCCTGCGATGACATCAAAGTCTCCTACAGGTCTCGAGTCCGCTGGATC
TCCGGGCTTTCTTCACCTGATCTCCAGCGTGGATGAGCTGACTCAGGCGG
TAAAGAAAGGGAACGAGGAGATGACCAAGGCGGTAAAGAAAGGGAACGAG
GAGATGACCAAGGCGGTAACCAACGGGATGGAGAGGATCACCGAGAGGCT
GACTGAGGAGCTGACAGAGGGGATGGCCAAGCTAAAGAACGAGATAGAGG
AGCTGACCAAGGCGGTAAAGAACGAGGAGGTGGTTCCCGACTACACCCTG
TTGACTAAGGTCTTGGACAGGCTGTGCCTTGTCTTGTACGTCATCGGCAT
CGCCGCAGCCATTCCGATGACCATGTTTTTGAGCAAGTATTAATTCACAG
CCACGCTGATCATCGTGTGCATGGGCCTGATGGGACTCTTCCTCTTCTTC
ACCTTGGCCGTCATCTTTATTCACGACAAAGAGGGACGGCTGTCTCCAGT
GGCGAGGGTTCTCTTTCTCCGCTACATGGCAAGGATGCTCCTTCTGGGAG
ATCTCACAAAGAAGATAGAAGCCAGCATGGATACCGCGGCCGGTGAGGAT
CCCCTGACCATCCACCCTGCCGTAGAGCTGTCAAACATTGCCATTGATCA
TGACGACGATGACGTAACAGCGGACGATGGAGAAAGTGTCGCTGAAAATG
AAATGGGCACCGCGGTCGATGAGGATTCCCTGACCGTCCACCCTGCCGTA
GAGCCGACAAACATCGCCATTGACGACGATGACGTGACGGCAGACGATGG
AGAAAGTATCGCTAGCGCTGAAATATTGCTGTGGAGTGGCGTTGACCCTG
CGATGACATCAAAGTCTCCTACAGGTCTCGAGTCCGCTGGATCTCCGGGC
TTTCTTCACCTGATCTCCAGCGTGGATGAGCTGACTCAGGCGGTAAAGAA
AGGGAACGAGGAGATGACCAAGGCGGTAAAGAAAGGGAACGAGGAGATGA
CCAAGGCGGTAACCAACGGGATGGAGAGGATCACCGAGAGGCTGACTGAG
GAGCTGACAGAGGGGATGGCCAAGCTAAAGAACGAGATAGAGGAGCTGAC
CAAGGCGGTAAAGAACGAGGAGGTGGTTCCCGACTACACCCTGTTGACTA
AGGTCTTGGACAGGCTGTGCCTTGTCTTGTACGTCATCGGCATCGCCGCA
GCCATTCCGATGACCATGTTTTTGAGCAAGTATTAATTCACAGCCACGCT
GATCATCGTGTGCATGGGCCTGATGGGACTCTTCCTCTTCTTCACCTTGG
CCGTCATCTTTATTCACGACAAAGAGGGACGGCTGTCTCCAGTGGCGAGG
GTTCTCTTTCTCCGCTACATGGCAAGGATGCTCCTTCTGGGAGATCTCAC
AAAGAAGATAGAAGCCAGCATGGATACCGCGGCCGGTGAGGATCCCCTGA
CCATCCACCCTGCCGTAGAGCTGTCAAACATTGCCATTGATCATGACGAC
GATGACGTAACAGCGGACGATGGAGAAAGTGTCGCTGAAAATGAAATGGG
CACCGCGGTCGATGAGGATTCCCTGACCGTCCACCCTGCCGTAGAGCCGA
CAAACATCGCCATTGACGACGATGACGTGACGGCAGACGATGGAGAAAGT
ATCGCTAGCGCTGAAATATTGCTGTGGAGTGGCGTTGACCCTGCGATGAC
ATCAAAGTCTCCTACAGGTCTCGAGTCCGCTGGATCTCCGGGCTTTCTTC
ACCTGATCTCCAGCGTGGATGAGCTGACTCAGGCGGTAAAGAAAGGGAAC
GAGGAGATGACCAAGGCGGTAAAGAAAGGGAACGAGGAGATGACCAAGGC
GGTAACCAACGGGATGGAGAGGATCACCGAGAGGCTGACTGAGGAGCTGA
CAGAGGGGATGGCCAAGCTAAAGAACGAGATAGAGGAGCTGACCAAGGCG
GTAAAGAACGAGGAGGTGGTTCCCGACTACACCCTGTTGACTAAGGTCTT
GGACAGGCTGTGCCTTGTCTTGTACGTCATCGGCATCGCCGCAGCCATTC
CGATGACCATGTTTTTGAGCAAGTATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97124gene:BL97124Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97124_cuf0transcript:BL97124_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97124_cuf0-E1BL97124_cuf0-E1-1564476830-427731Branchiostoma lanceolatumexon
BL97124_cuf0-E2BL97124_cuf0-E2-1564476830-427728Branchiostoma lanceolatumexon
BL97124_cuf0-E3BL97124_cuf0-E3-1564476830-427726Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000297genomeSc0000297:276573..279839 -
Properties
Property NameValue
Transcript idBL97124_cuf0
Biotypeprotein_coding