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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97123_cuf2 >transcript:BL97123_cuf2-protein ID=transcript:BL97123_cuf2-protein|Name=transcript:BL97123_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=187bp
RCRFFWTTMCGDDQFSCVDGTCLSNSVLCDSQRDCSTGEDEERCGGPCSS
LQFECGGSCLPRYRVCDGLEDCSNGIDEQNCVTSSTGCGDKQFRCSDSTC
LLESQLCNNQSDCSGGEDEDDCGDATPPGYPLGLATRYIPDVFITASSQY
KSEFAPFQARHAPPSAAGYCWVPSSVEDQWLQVYFGK Run BLAST on NCBI mRNA from alignment at Sc0000314:180374..185185- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97123_cuf2 ID=transcript:BL97123_cuf2|Name=transcript:BL97123_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4812bp|location=Sequence derived from alignment at Sc0000314:180374..185185- (Branchiostoma lanceolatum)
ACGATGTCGGTTTTTTTGGACAACGAGTTGGTAGGTTGCTGTTTGAGTGC
GCGTTTTTTAGACGCTAATTATTTCCGTTAAAACAGGTCAACGGGGGTGT
GTTTAATCAAATGCCTATAATACTTTGCCTATGGCAACATCATGTCGTTA
ACTTAATTTTTCGTCAGAAGCAGACTTCAAATTCTATTTCGGTACAGAAA
TGCCCACTGCATTTGTTTCATTCTTTTTTTTTTACATTATGAATTATCTT
ATTTAGTTTGTTTTTTTTCATATTCAGACCAAAATGTATGCTTTGGGCTC
CTGGAAATTAAAACTAAATGACCAGAAATTTGGTGTGAGATTGCATTGGA
CACATACCGAAAGGATGTTCTTCACATTTTTGGCATATATCTCAAAGTCT
GCAAAATGATTTTGTTTGGGATTCGTTGCTATTTGAAATAATGTACATTT
TTCACTCCTGCGCCCTGGTAATATAGCCGAAAATTTGGTACGTGCGTGCC
TATGACATATGTCGATGGGCCAAAAATAGTTACTCATAAAGCAACTGGAT
AAGATTTTGAAACTTTCAAATTTCAACTTTCAAATTTCAACCTTCAAAAT
TTTGAAATTTTCAAAATTTTATCCAGTTGCTTGTCTTTGTTGGCGTATCT
TACTGCCTGGATGTCTAACCGTCATCAACGTGTCGATGCATGGGTGTTCA
TCGAATTTCACACTTTCAAAACTACTTGAAAATGATTTATTTTGGGATTC
TCCGACAAAAACCTGTATACTTTGGGCTCTGGGTATACTTGATGTTTAAA
CCAAATGACTTGGAATTTGGTATGTAGATGTCTATGACCTATACCCACAG
GACGCCGTTAACTTTTGTTGCATACGGTACTTTAAACTTAACTGATGTAT
TTTCGAATTTTGGGCAAATTTCAGACCAAATATGTACATTTTGGCTCCCA
TGCCCTGGTATTATACCTCACTGACCTGAAATTTGGCATCGGGATACCTG
TTATGTATGCCCAGTGGACTTCATTTGCAAGTTTGGCATACGCTACTTTA
AATTGATCTATTTGGGTATTTCAAACAACAAAGTTTACAAGAGAGTCGGC
GGTTATTTTTCATGTGGCACGAATAAAATTTTACGAAAACTTCACCTACG
CAGTGTGTGGGGATGACCAGTTCTCCTGCGTGGATGGAACATGCCTGTCG
AACTCCGTACTATGTGACAGCCAGCGGGACTGCAGCACAGGAGAAGACGA
AGAACGATGTGGAGGTAATTTTTCTCACACTTTCTAACTATCTATAAATC
ATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTTAT
CTTTCTATCTATCTATCTATCTATCTAACGTTATATATCTGTATCTATGT
GTCTCTCTCTCTCCCCCTCTCTCTGGAGAGAGACACACGGACCATGAACC
AGCTTTCGCCCTACTAAATGTTGTATGTTGTAGCAATTGTATATTGTTGT
ACCATAAATATGTAATGATATATGTTGATAGAGTAATTAGGACACTAATG
ACTGTGTATCTCTGTTATATTGTATCTGACCCTTACCTCTTCCCTCATAA
CCTCAATGAAAAGCGGCCTGCGTGCCGATTTGAGCTTATCATGAATAAAC
AAAAGTTCAAATAGACAAACTCTTTGTCTCTCTCTGTCTCTCTTTCTCTC
TCTCTTTCTTTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTA
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTCTCTCTCTA
TATATATATATATATATATATATATATATATATATATTATATATATCATA
TACATTGCATTGTTGTCGCTGCCGTTCTTGTTGTCTCTAATCACTTGACA
ATGGTACCCTCCGCTCCGTGACATACAGGACCCTGCAGTAGTCTGCAGTT
CGAGTGTGGCGGCTCATGTCTGCCGAGGTACCGAGTCTGTGACGGGTTGG
AGGACTGTTCGAACGGAATAGACGAGCAAAATTGTGTCACTAGCTCTACA
GGTGAGAGTCAGATATCATATTTTTTTTTTTACAATCAATATTTGAAGAC
ATTGATAATAATGCATCACATGCAAATCCATACCCTAGGGTTAACTTAGT
TGCAAACAAATAAAACAAACAAACAAACACAGCAAACACAGTAATCAATG
ACTAGTATTTGTTACAGGTGGTACAAAATAGTTTTAGATGCTTTTATTCT
CATGTCATTTATATCGCTACATGCAAACTACTAGGTAGACACAATACCAT
ATTAGTACTTTCAAAACAAAACAAAATAAAATGAATTCATTGACAGTAAG
ATTTGGAATATCAAGGAAGCATATACATCTTTTGTTGACATTGTCGTGTT
CCAGTTATGTCATAATCTTACCAAACATGTATTTCAAAATGCAACACAGA
TGTTAAGAATAATGTATCTATTTCATGTACATATCAAAGTCAAGAGTGTA
ATTTTTCTAAATTTCTGTCTCTACAGGTTGCGGGGATAAACAGTTCCGTT
GTTCGGACAGTACCTGCCTGTTGGAGTCCCAGTTATGCAACAACCAGTCG
GACTGCAGTGGAGGGGAGGACGAAGATGACTGTGGGGGTAATTACTATAG
ATTATCTTCGAATTCCCAAAACACGAAGTATACCTTCATCTCCCTTGAAT
ACAATAGTGTGACATAGTCGTCACTTAAAGGCACCCAGAGCATTTCATGA
GGCTTGGAAACTGGAAATATTCTAGTTGCTGTAATCCTTATGAAATTGAC
ATTTAATGCCACTGTTTACCACATTTGCGTTCGGATTTCTTATCAAAAGT
GCTCAAAAGCGGCACAAAAATGAGATACATGGTGATCTTTTAGTTTAACG
CGCCTAGTGTAAATAGACCGATAACATTGCCCCACCTACCTCCGTCAAAA
TGTAGAAATGCAAAAATTGAAACATAAAAATGCAAATATTTGGTTGAACA
GTGGGGAATCGTTGTAGGGCAAAGTCCACCAATCCAGTCTCGTACCTATT
TATATAGAAAACATGCAAGAAGAAGGCTGTCAAAAGTCACCTACCTGAGG
TTTAGTTCTTGGAAAACTCACATTGGCTACGTAGTCTGACCTCCAAAGTG
TCTATCTAGTGATTTTGGCGAGAAGCCTACCAACAAAAAGGCTTATTACA
ATTCCTTTACCAAGGCCAGCTGAAAATGGACCCTCCGCGCATGCCTGTAA
TCGTGACCTTTGCCCTGTAGAGGTTAATAAAGATGTCTTTCAATGATAGT
GTGTGTGTGTGTGTGTGTCTGTTTGTATGTGTGTGTCAGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTTCGGTTTACTTATTTCTGTCAGTAGT
GCCGGGAATAGCTCACTGTCGGTATATTTTCAACAGATGCGACACCTCCT
GGATATCCTCTTGGTTTGGCGACTCGGTACATCCCCGATGTTTTCATCAC
GGCCAGTTCTCAGTACAAGTCGGAGTTCGCACCATTTCAAGCTCGGCACG
CGCCCCCGTCAGCAGCAGGATACTGCTGGGTACCAAGTTCTGTAGAGGAT
CAATGGCTTCAGGTACAACATTTTGGGGTTTATTGTGTACCGCTGCTTCG
CCATCTGGATCAAATTCCGTGCATCCTAGGGCCCACGTTCGATCCTAGGG
GTCGACTCGAACTTGGACATGTTGTAAGGGATTGCATTCGTCATTTCGGA
TGGTGACGTAAGGCCGGTGGCCCCGTGTATGAGGGAGCTTCGGGCGTAAG
CTTCAAGCGTCAAACCTCTTCACGTAAAAGAACCCAACACACTTATCGAG
AAGAGTAGTGGTGACCCGCTGTGCTTGGTCCAAAACGCGAGCCGTGGCGA
AGCCGCATTGACTACCACTAGCTAGTTGGAAAAGCATTATGCTTCACCTC
AATTGAGGATGACTGCTTTACTTTACTTTACTTGTGTATCGGGTTAATCA
TAAACCACTCTCCTAGTAGCCCTTCAACTGGTCATGCTTATAGAAACATG
ATAGCGAACATCTCTGCGTCAGGAGAACTGGGCAAGCCTAACCCTGTTTA
TGCAAATGTTTTAACTTGGACCAATTGTCATTCTGTGAACCCGCTGTTAC
CATGGTGTTGGAAGCTGTGGTTACTGGTTTCCTTAGTGACAGAGACACGT
GAGCTCATATCGGATTCATTTTCATATATTAATAAAGAATGATGAGCTCC
TAATGGTACTTTTAATTTTCTTTTTGAAATCGTGCAGTCTCTTTGCTTAG
AGATAAACGGACGCACTCTCTCGGGGTAGGTGGCCCATTACGCCCTTTAC
AGCTAGCGAGAGGTTGTGTAACGCAAATTAGGGATGTTGGCAATAATCTA
GTCTCTACCAGACTAACTACGCCGGCTATAGGGAGAATATTGCCGGGGCA
CTCGAGGGTTTCATTCGCAGGCGCCTATTTGACCCTATCTCCGTAGCCGA
CTCCCTTCATACAATTGACTCTATTTGGCCAATTTCTACTTTGCCCCCAG
CGAACCGCGGAGACTGGTAGAGGCTAGAAATAATCAAGAATGTATCCATT
TACGTAGCAGTAACGTTTTGTCATAAATCTGTATTCTTAACTGCAGGTTT
ACTTTGGCAAGA Coding sequence (CDS) from alignment at Sc0000314:180374..185185- >transcript:BL97123_cuf2 ID=transcript:BL97123_cuf2|Name=transcript:BL97123_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=3366bp|location=Sequence derived from alignment at Sc0000314:180374..185185- (Branchiostoma lanceolatum)
CGATGTCGGTTTTTTTGGACAACGATGTGTGGGGATGACCAGTTCTCCTG
CGTGGATGGAACATGCCTGTCGAACTCCGTACTATGTGACAGCCAGCGGG
ACTGCAGCACAGGAGAAGACGAAGAACGATGTGGAGGACCCTGCAGTAGT
CTGCAGTTCGAGTGTGGCGGCTCATGTCTGCCGAGGTACCGAGTCTGTGA
CGGGTTGGAGGACTGTTCGAACGGAATAGACGAGCAAAATTGTGTCACTA
GCTCTACAGGTTGCGGGGATAAACAGTTCCGTTGTTCGGACAGTACCTGC
CTGTTGGAGTCCCAGTTATGCAACAACCAGTCGGACTGCAGTGGAGGGGA
GGACGAAGATGACTGTGGGGATGCGACACCTCCTGGATATCCTCTTGGTT
TGGCGACTCGGTACATCCCCGATGTTTTCATCACGGCCAGTTCTCAGTAC
AAGTCGGAGTTCGCACCATTTCAAGCTCGGCACGCGCCCCCGTCAGCAGC
AGGATACTGCTGGGTACCAAGTTCTGTAGAGGATCAATGGCTTCAGGTTT
ACTTTGGCAAGCGATGTCGGTTTTTTTGGACAACGATGTGTGGGGATGAC
CAGTTCTCCTGCGTGGATGGAACATGCCTGTCGAACTCCGTACTATGTGA
CAGCCAGCGGGACTGCAGCACAGGAGAAGACGAAGAACGATGTGGAGGAC
CCTGCAGTAGTCTGCAGTTCGAGTGTGGCGGCTCATGTCTGCCGAGGTAC
CGAGTCTGTGACGGGTTGGAGGACTGTTCGAACGGAATAGACGAGCAAAA
TTGTGTCACTAGCTCTACAGGTTGCGGGGATAAACAGTTCCGTTGTTCGG
ACAGTACCTGCCTGTTGGAGTCCCAGTTATGCAACAACCAGTCGGACTGC
AGTGGAGGGGAGGACGAAGATGACTGTGGGGATGCGACACCTCCTGGATA
TCCTCTTGGTTTGGCGACTCGGTACATCCCCGATGTTTTCATCACGGCCA
GTTCTCAGTACAAGTCGGAGTTCGCACCATTTCAAGCTCGGCACGCGCCC
CCGTCAGCAGCAGGATACTGCTGGGTACCAAGTTCTGTAGAGGATCAATG
GCTTCAGGTTTACTTTGGCAAGCGATGTCGGTTTTTTTGGACAACGATGT
GTGGGGATGACCAGTTCTCCTGCGTGGATGGAACATGCCTGTCGAACTCC
GTACTATGTGACAGCCAGCGGGACTGCAGCACAGGAGAAGACGAAGAACG
ATGTGGAGGACCCTGCAGTAGTCTGCAGTTCGAGTGTGGCGGCTCATGTC
TGCCGAGGTACCGAGTCTGTGACGGGTTGGAGGACTGTTCGAACGGAATA
GACGAGCAAAATTGTGTCACTAGCTCTACAGGTTGCGGGGATAAACAGTT
CCGTTGTTCGGACAGTACCTGCCTGTTGGAGTCCCAGTTATGCAACAACC
AGTCGGACTGCAGTGGAGGGGAGGACGAAGATGACTGTGGGGATGCGACA
CCTCCTGGATATCCTCTTGGTTTGGCGACTCGGTACATCCCCGATGTTTT
CATCACGGCCAGTTCTCAGTACAAGTCGGAGTTCGCACCATTTCAAGCTC
GGCACGCGCCCCCGTCAGCAGCAGGATACTGCTGGGTACCAAGTTCTGTA
GAGGATCAATGGCTTCAGGTTTACTTTGGCAAGCGATGTCGGTTTTTTTG
GACAACGATGTGTGGGGATGACCAGTTCTCCTGCGTGGATGGAACATGCC
TGTCGAACTCCGTACTATGTGACAGCCAGCGGGACTGCAGCACAGGAGAA
GACGAAGAACGATGTGGAGGACCCTGCAGTAGTCTGCAGTTCGAGTGTGG
CGGCTCATGTCTGCCGAGGTACCGAGTCTGTGACGGGTTGGAGGACTGTT
CGAACGGAATAGACGAGCAAAATTGTGTCACTAGCTCTACAGGTTGCGGG
GATAAACAGTTCCGTTGTTCGGACAGTACCTGCCTGTTGGAGTCCCAGTT
ATGCAACAACCAGTCGGACTGCAGTGGAGGGGAGGACGAAGATGACTGTG
GGGATGCGACACCTCCTGGATATCCTCTTGGTTTGGCGACTCGGTACATC
CCCGATGTTTTCATCACGGCCAGTTCTCAGTACAAGTCGGAGTTCGCACC
ATTTCAAGCTCGGCACGCGCCCCCGTCAGCAGCAGGATACTGCTGGGTAC
CAAGTTCTGTAGAGGATCAATGGCTTCAGGTTTACTTTGGCAAGCGATGT
CGGTTTTTTTGGACAACGATGTGTGGGGATGACCAGTTCTCCTGCGTGGA
TGGAACATGCCTGTCGAACTCCGTACTATGTGACAGCCAGCGGGACTGCA
GCACAGGAGAAGACGAAGAACGATGTGGAGGACCCTGCAGTAGTCTGCAG
TTCGAGTGTGGCGGCTCATGTCTGCCGAGGTACCGAGTCTGTGACGGGTT
GGAGGACTGTTCGAACGGAATAGACGAGCAAAATTGTGTCACTAGCTCTA
CAGGTTGCGGGGATAAACAGTTCCGTTGTTCGGACAGTACCTGCCTGTTG
GAGTCCCAGTTATGCAACAACCAGTCGGACTGCAGTGGAGGGGAGGACGA
AGATGACTGTGGGGATGCGACACCTCCTGGATATCCTCTTGGTTTGGCGA
CTCGGTACATCCCCGATGTTTTCATCACGGCCAGTTCTCAGTACAAGTCG
GAGTTCGCACCATTTCAAGCTCGGCACGCGCCCCCGTCAGCAGCAGGATA
CTGCTGGGTACCAAGTTCTGTAGAGGATCAATGGCTTCAGGTTTACTTTG
GCAAGCGATGTCGGTTTTTTTGGACAACGATGTGTGGGGATGACCAGTTC
TCCTGCGTGGATGGAACATGCCTGTCGAACTCCGTACTATGTGACAGCCA
GCGGGACTGCAGCACAGGAGAAGACGAAGAACGATGTGGAGGACCCTGCA
GTAGTCTGCAGTTCGAGTGTGGCGGCTCATGTCTGCCGAGGTACCGAGTC
TGTGACGGGTTGGAGGACTGTTCGAACGGAATAGACGAGCAAAATTGTGT
CACTAGCTCTACAGGTTGCGGGGATAAACAGTTCCGTTGTTCGGACAGTA
CCTGCCTGTTGGAGTCCCAGTTATGCAACAACCAGTCGGACTGCAGTGGA
GGGGAGGACGAAGATGACTGTGGGGATGCGACACCTCCTGGATATCCTCT
TGGTTTGGCGACTCGGTACATCCCCGATGTTTTCATCACGGCCAGTTCTC
AGTACAAGTCGGAGTTCGCACCATTTCAAGCTCGGCACGCGCCCCCGTCA
GCAGCAGGATACTGCTGGGTACCAAGTTCTGTAGAGGATCAATGGCTTCA
GGTTTACTTTGGCAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000314 | genome | Sc0000314:180374..185185 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97123_cuf2 |
| Biotype | protein_coding |
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