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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97116_cuf5 >transcript:BL97116_cuf5-protein ID=transcript:BL97116_cuf5-protein|Name=transcript:BL97116_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=341bp
QDMSEMPLIVEVVFYMDECLLLAVFDQIRCSHSLLLRPTCFDEMSPFVSF
TDSAFTRSERLGCCLSLLLMSMVSSAMWLREEIGTQVVQAVSLGPFSFTL
NGVFTGVMTSITCLPVIMAIVLLFQYSRPSNKGDRRVQDVETGGPAKAPA
PQESAKRLPHWCKYVAWVLVVLSAVGSAVFTALYSLTWGKDKSERWLSAY
FTTFLVDMFVLQPAKILLLTILTSSFRKPQAVQKIFEEKRGPVSIDARTV
SSQKARFSSDTFRMRRKMEQLSMTSLANIKQARMRQRRDRRVMNTFWDIM
WFCCCLLLVIIISNEHHNTTEGFYQTQSITNTFVQSMDEVS Run BLAST on NCBI mRNA from alignment at Sc0000052:60978..62561+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97116_cuf5 ID=transcript:BL97116_cuf5|Name=transcript:BL97116_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=1584bp|location=Sequence derived from alignment at Sc0000052:60978..62561+ (Branchiostoma lanceolatum)
CACAAGATATGTCTGAAATGCCACTGATAGTAGAAGTTGTATTTTACATG
GATGAATGCCTCTTGCTTGCTGTATTTGATCAAATACGTTGCTCTCATTC
TTTATTATTGAGACCAACTTGTTTTGATGAAATGTCTCCATTTGTTTCCT
TTACAGATAGCGCGTTCACCCGCAGCGAGAGGCTCGGCTGCTGCCTGAGT
CTCCTCCTCATGTCCATGGTGTCCAGCGCCATGTGGCTGAGGGAAGAAAT
AGGAACCCAGGTTGTGCAGGCCGTCAGCCTGGGGCCGTTCTCCTTCACCC
TGAATGGAGTATTCACGGGGGTCATGACCAGCATTACCTGCCTTCCCGTC
ATCATGGCCATAGTCCTGCTGTTCCAGTACAGCCGACCCAGCAACAAGGG
CGACCGGAGGGTCCAAGATGTGGAGACGGGCGGCCCAGCTAAGGCACCCG
CCCCGCAAGAATCAGCCAAGCGCCTGCCGCACTGGTGCAAGTACGTGGCC
TGGGTGCTGGTGGTGCTGTCTGCCGTGGGGTCAGCTGTCTTCACCGCGCT
GTACAGTCTGACGTGGGGCAAGGACAAGTCCGAGAGGTGGCTGTCAGCAT
ACTTCACCACCTTTCTGGTGGACATGTTTGTCCTGCAACCAGCAAAGGTA
AGGACACTATTTTGTTGAATTGTCTAGATATTAAAGGATATGATTGTTAT
GTAACATCGTTACATGTTTGTTACAGTTGCAGTTGCTACATGTACCTGTT
ACTAACATCCATGCACAATGTTGTTTGATAATACCTGACTTCCTCAGAAC
ATGCTGTATACAAACCACATCCTAAGGATCATATTGCCATATGCATCTTC
AGCTACTGTTCCATTTGTTCTCAATCCTATTATGATAAACAATGTTTTCA
GAAATCCTAACAAGCAATGCTTTAATTGTCTTTCAGATATTGCTCCTCAC
AATCTTGACTTCATCCTTTCGCAAGCCGCAAGCCGTCCAGAAGATTTTTG
AAGAGAAGCGGGGCCCCGTTTCCATTGATGCCAGGACAGTGTCTTCACAA
AAGGCACGCTTCAGCTGTAAGTTTTAGCACACACGTTTGTAGAAAACAGC
ATTATATGTCATTACCATGAAGATTTAGACTATGCACAAGTCATGTTACT
ACAAGATTAGAAACTGTTTATTACATAGTGAAAGAAAGCCTGTGTGAGTG
TTCTCCTAGTTCCACACCCTGTTTTGTGAATTGAGTTGACATTTCCTCTT
GCATCAGTTTGTATATTATCCAGGTGGTGGGGTTTTCCACTTTTCTAACA
AATACAGATATATTTTTTGATATGCTTACTACAGCCGATACATTTCGCAT
GAGGAGGAAGATGGAACAACTTTCGATGACATCCCTTGCCAACATCAAAC
AAGCGAGAATGAGGCAGCGCAGGGACAGGAGAGTTATGAACACCTTTTGG
GACATCATGTGGTTCTGCTGTTGCCTCCTGCTTGTCATCATTATCTCCAA
CGAGCACCACAACACCACAGAGGGTTTCTATCAGACACAGAGCATAACCA
ACACCTTTGTGCAGTCTATGGACGAGGTAAGTTC Coding sequence (CDS) from alignment at Sc0000052:60978..62561+ >transcript:BL97116_cuf5 ID=transcript:BL97116_cuf5|Name=transcript:BL97116_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=3069bp|location=Sequence derived from alignment at Sc0000052:60978..62561+ (Branchiostoma lanceolatum)
CAAGATATGTCTGAAATGCCACTGATAGTAGAAGTTGTATTTTACATGGA
TGAATGCCTCTTGCTTGCTGTATTTGATCAAATACGTTGCTCTCATTCTT
TATTATTGAGACCAACTTGTTTTGATGAAATGTCTCCATTTGTTTCCTTT
ACAGATAGCGCGTTCACCCGCAGCGAGAGGCTCGGCTGCTGCCTGAGTCT
CCTCCTCATGTCCATGGTGTCCAGCGCCATGTGGCTGAGGGAAGAAATAG
GAACCCAGGTTGTGCAGGCCGTCAGCCTGGGGCCGTTCTCCTTCACCCTG
AATGGAGTATTCACGGGGGTCATGACCAGCATTACCTGCCTTCCCGTCAT
CATGGCCATAGTCCTGCTGTTCCAGTACAGCCGACCCAGCAACAAGGGCG
ACCGGAGGGTCCAAGATGTGGAGACGGGCGGCCCAGCTAAGGCACCCGCC
CCGCAAGAATCAGCCAAGCGCCTGCCGCACTGGTGCAAGTACGTGGCCTG
GGTGCTGGTGGTGCTGTCTGCCGTGGGGTCAGCTGTCTTCACCGCGCTGT
ACAGTCTGACGTGGGGCAAGGACAAGTCCGAGAGGTGGCTGTCAGCATAC
TTCACCACCTTTCTGGTGGACATGTTTGTCCTGCAACCAGCAAAGATATT
GCTCCTCACAATCTTGACTTCATCCTTTCGCAAGCCGCAAGCCGTCCAGA
AGATTTTTGAAGAGAAGCGGGGCCCCGTTTCCATTGATGCCAGGACAGTG
TCTTCACAAAAGGCACGCTTCAGCTCCGATACATTTCGCATGAGGAGGAA
GATGGAACAACTTTCGATGACATCCCTTGCCAACATCAAACAAGCGAGAA
TGAGGCAGCGCAGGGACAGGAGAGTTATGAACACCTTTTGGGACATCATG
TGGTTCTGCTGTTGCCTCCTGCTTGTCATCATTATCTCCAACGAGCACCA
CAACACCACAGAGGGTTTCTATCAGACACAGAGCATAACCAACACCTTTG
TGCAGTCTATGGACGAGGTAAGTCAAGATATGTCTGAAATGCCACTGATA
GTAGAAGTTGTATTTTACATGGATGAATGCCTCTTGCTTGCTGTATTTGA
TCAAATACGTTGCTCTCATTCTTTATTATTGAGACCAACTTGTTTTGATG
AAATGTCTCCATTTGTTTCCTTTACAGATAGCGCGTTCACCCGCAGCGAG
AGGCTCGGCTGCTGCCTGAGTCTCCTCCTCATGTCCATGGTGTCCAGCGC
CATGTGGCTGAGGGAAGAAATAGGAACCCAGGTTGTGCAGGCCGTCAGCC
TGGGGCCGTTCTCCTTCACCCTGAATGGAGTATTCACGGGGGTCATGACC
AGCATTACCTGCCTTCCCGTCATCATGGCCATAGTCCTGCTGTTCCAGTA
CAGCCGACCCAGCAACAAGGGCGACCGGAGGGTCCAAGATGTGGAGACGG
GCGGCCCAGCTAAGGCACCCGCCCCGCAAGAATCAGCCAAGCGCCTGCCG
CACTGGTGCAAGTACGTGGCCTGGGTGCTGGTGGTGCTGTCTGCCGTGGG
GTCAGCTGTCTTCACCGCGCTGTACAGTCTGACGTGGGGCAAGGACAAGT
CCGAGAGGTGGCTGTCAGCATACTTCACCACCTTTCTGGTGGACATGTTT
GTCCTGCAACCAGCAAAGATATTGCTCCTCACAATCTTGACTTCATCCTT
TCGCAAGCCGCAAGCCGTCCAGAAGATTTTTGAAGAGAAGCGGGGCCCCG
TTTCCATTGATGCCAGGACAGTGTCTTCACAAAAGGCACGCTTCAGCTCC
GATACATTTCGCATGAGGAGGAAGATGGAACAACTTTCGATGACATCCCT
TGCCAACATCAAACAAGCGAGAATGAGGCAGCGCAGGGACAGGAGAGTTA
TGAACACCTTTTGGGACATCATGTGGTTCTGCTGTTGCCTCCTGCTTGTC
ATCATTATCTCCAACGAGCACCACAACACCACAGAGGGTTTCTATCAGAC
ACAGAGCATAACCAACACCTTTGTGCAGTCTATGGACGAGGTAAGTCAAG
ATATGTCTGAAATGCCACTGATAGTAGAAGTTGTATTTTACATGGATGAA
TGCCTCTTGCTTGCTGTATTTGATCAAATACGTTGCTCTCATTCTTTATT
ATTGAGACCAACTTGTTTTGATGAAATGTCTCCATTTGTTTCCTTTACAG
ATAGCGCGTTCACCCGCAGCGAGAGGCTCGGCTGCTGCCTGAGTCTCCTC
CTCATGTCCATGGTGTCCAGCGCCATGTGGCTGAGGGAAGAAATAGGAAC
CCAGGTTGTGCAGGCCGTCAGCCTGGGGCCGTTCTCCTTCACCCTGAATG
GAGTATTCACGGGGGTCATGACCAGCATTACCTGCCTTCCCGTCATCATG
GCCATAGTCCTGCTGTTCCAGTACAGCCGACCCAGCAACAAGGGCGACCG
GAGGGTCCAAGATGTGGAGACGGGCGGCCCAGCTAAGGCACCCGCCCCGC
AAGAATCAGCCAAGCGCCTGCCGCACTGGTGCAAGTACGTGGCCTGGGTG
CTGGTGGTGCTGTCTGCCGTGGGGTCAGCTGTCTTCACCGCGCTGTACAG
TCTGACGTGGGGCAAGGACAAGTCCGAGAGGTGGCTGTCAGCATACTTCA
CCACCTTTCTGGTGGACATGTTTGTCCTGCAACCAGCAAAGATATTGCTC
CTCACAATCTTGACTTCATCCTTTCGCAAGCCGCAAGCCGTCCAGAAGAT
TTTTGAAGAGAAGCGGGGCCCCGTTTCCATTGATGCCAGGACAGTGTCTT
CACAAAAGGCACGCTTCAGCTCCGATACATTTCGCATGAGGAGGAAGATG
GAACAACTTTCGATGACATCCCTTGCCAACATCAAACAAGCGAGAATGAG
GCAGCGCAGGGACAGGAGAGTTATGAACACCTTTTGGGACATCATGTGGT
TCTGCTGTTGCCTCCTGCTTGTCATCATTATCTCCAACGAGCACCACAAC
ACCACAGAGGGTTTCTATCAGACACAGAGCATAACCAACACCTTTGTGCA
GTCTATGGACGAGGTAAGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000052 | genome | Sc0000052:60978..62561 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97116_cuf5 |
| Biotype | protein_coding |
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