Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

transcript:BL97116_cuf5 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97116_cuf5
Unique Nametranscript:BL97116_cuf5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97116_cuf5

>transcript:BL97116_cuf5-protein ID=transcript:BL97116_cuf5-protein|Name=transcript:BL97116_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=341bp
QDMSEMPLIVEVVFYMDECLLLAVFDQIRCSHSLLLRPTCFDEMSPFVSF
TDSAFTRSERLGCCLSLLLMSMVSSAMWLREEIGTQVVQAVSLGPFSFTL
NGVFTGVMTSITCLPVIMAIVLLFQYSRPSNKGDRRVQDVETGGPAKAPA
PQESAKRLPHWCKYVAWVLVVLSAVGSAVFTALYSLTWGKDKSERWLSAY
FTTFLVDMFVLQPAKILLLTILTSSFRKPQAVQKIFEEKRGPVSIDARTV
SSQKARFSSDTFRMRRKMEQLSMTSLANIKQARMRQRRDRRVMNTFWDIM
WFCCCLLLVIIISNEHHNTTEGFYQTQSITNTFVQSMDEVS
Run BLAST on NCBI

mRNA from alignment at Sc0000052:60978..62561+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97116_cuf5 ID=transcript:BL97116_cuf5|Name=transcript:BL97116_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=1584bp|location=Sequence derived from alignment at Sc0000052:60978..62561+ (Branchiostoma lanceolatum)
CACAAGATATGTCTGAAATGCCACTGATAGTAGAAGTTGTATTTTACATG GATGAATGCCTCTTGCTTGCTGTATTTGATCAAATACGTTGCTCTCATTC TTTATTATTGAGACCAACTTGTTTTGATGAAATGTCTCCATTTGTTTCCT TTACAGATAGCGCGTTCACCCGCAGCGAGAGGCTCGGCTGCTGCCTGAGT CTCCTCCTCATGTCCATGGTGTCCAGCGCCATGTGGCTGAGGGAAGAAAT AGGAACCCAGGTTGTGCAGGCCGTCAGCCTGGGGCCGTTCTCCTTCACCC TGAATGGAGTATTCACGGGGGTCATGACCAGCATTACCTGCCTTCCCGTC ATCATGGCCATAGTCCTGCTGTTCCAGTACAGCCGACCCAGCAACAAGGG CGACCGGAGGGTCCAAGATGTGGAGACGGGCGGCCCAGCTAAGGCACCCG CCCCGCAAGAATCAGCCAAGCGCCTGCCGCACTGGTGCAAGTACGTGGCC TGGGTGCTGGTGGTGCTGTCTGCCGTGGGGTCAGCTGTCTTCACCGCGCT GTACAGTCTGACGTGGGGCAAGGACAAGTCCGAGAGGTGGCTGTCAGCAT ACTTCACCACCTTTCTGGTGGACATGTTTGTCCTGCAACCAGCAAAGGTA AGGACACTATTTTGTTGAATTGTCTAGATATTAAAGGATATGATTGTTAT GTAACATCGTTACATGTTTGTTACAGTTGCAGTTGCTACATGTACCTGTT ACTAACATCCATGCACAATGTTGTTTGATAATACCTGACTTCCTCAGAAC ATGCTGTATACAAACCACATCCTAAGGATCATATTGCCATATGCATCTTC AGCTACTGTTCCATTTGTTCTCAATCCTATTATGATAAACAATGTTTTCA GAAATCCTAACAAGCAATGCTTTAATTGTCTTTCAGATATTGCTCCTCAC AATCTTGACTTCATCCTTTCGCAAGCCGCAAGCCGTCCAGAAGATTTTTG AAGAGAAGCGGGGCCCCGTTTCCATTGATGCCAGGACAGTGTCTTCACAA AAGGCACGCTTCAGCTGTAAGTTTTAGCACACACGTTTGTAGAAAACAGC ATTATATGTCATTACCATGAAGATTTAGACTATGCACAAGTCATGTTACT ACAAGATTAGAAACTGTTTATTACATAGTGAAAGAAAGCCTGTGTGAGTG TTCTCCTAGTTCCACACCCTGTTTTGTGAATTGAGTTGACATTTCCTCTT GCATCAGTTTGTATATTATCCAGGTGGTGGGGTTTTCCACTTTTCTAACA AATACAGATATATTTTTTGATATGCTTACTACAGCCGATACATTTCGCAT GAGGAGGAAGATGGAACAACTTTCGATGACATCCCTTGCCAACATCAAAC AAGCGAGAATGAGGCAGCGCAGGGACAGGAGAGTTATGAACACCTTTTGG GACATCATGTGGTTCTGCTGTTGCCTCCTGCTTGTCATCATTATCTCCAA CGAGCACCACAACACCACAGAGGGTTTCTATCAGACACAGAGCATAACCA ACACCTTTGTGCAGTCTATGGACGAGGTAAGTTC

Coding sequence (CDS) from alignment at Sc0000052:60978..62561+

>transcript:BL97116_cuf5 ID=transcript:BL97116_cuf5|Name=transcript:BL97116_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=3069bp|location=Sequence derived from alignment at Sc0000052:60978..62561+ (Branchiostoma lanceolatum)
CAAGATATGTCTGAAATGCCACTGATAGTAGAAGTTGTATTTTACATGGA
TGAATGCCTCTTGCTTGCTGTATTTGATCAAATACGTTGCTCTCATTCTT
TATTATTGAGACCAACTTGTTTTGATGAAATGTCTCCATTTGTTTCCTTT
ACAGATAGCGCGTTCACCCGCAGCGAGAGGCTCGGCTGCTGCCTGAGTCT
CCTCCTCATGTCCATGGTGTCCAGCGCCATGTGGCTGAGGGAAGAAATAG
GAACCCAGGTTGTGCAGGCCGTCAGCCTGGGGCCGTTCTCCTTCACCCTG
AATGGAGTATTCACGGGGGTCATGACCAGCATTACCTGCCTTCCCGTCAT
CATGGCCATAGTCCTGCTGTTCCAGTACAGCCGACCCAGCAACAAGGGCG
ACCGGAGGGTCCAAGATGTGGAGACGGGCGGCCCAGCTAAGGCACCCGCC
CCGCAAGAATCAGCCAAGCGCCTGCCGCACTGGTGCAAGTACGTGGCCTG
GGTGCTGGTGGTGCTGTCTGCCGTGGGGTCAGCTGTCTTCACCGCGCTGT
ACAGTCTGACGTGGGGCAAGGACAAGTCCGAGAGGTGGCTGTCAGCATAC
TTCACCACCTTTCTGGTGGACATGTTTGTCCTGCAACCAGCAAAGATATT
GCTCCTCACAATCTTGACTTCATCCTTTCGCAAGCCGCAAGCCGTCCAGA
AGATTTTTGAAGAGAAGCGGGGCCCCGTTTCCATTGATGCCAGGACAGTG
TCTTCACAAAAGGCACGCTTCAGCTCCGATACATTTCGCATGAGGAGGAA
GATGGAACAACTTTCGATGACATCCCTTGCCAACATCAAACAAGCGAGAA
TGAGGCAGCGCAGGGACAGGAGAGTTATGAACACCTTTTGGGACATCATG
TGGTTCTGCTGTTGCCTCCTGCTTGTCATCATTATCTCCAACGAGCACCA
CAACACCACAGAGGGTTTCTATCAGACACAGAGCATAACCAACACCTTTG
TGCAGTCTATGGACGAGGTAAGTCAAGATATGTCTGAAATGCCACTGATA
GTAGAAGTTGTATTTTACATGGATGAATGCCTCTTGCTTGCTGTATTTGA
TCAAATACGTTGCTCTCATTCTTTATTATTGAGACCAACTTGTTTTGATG
AAATGTCTCCATTTGTTTCCTTTACAGATAGCGCGTTCACCCGCAGCGAG
AGGCTCGGCTGCTGCCTGAGTCTCCTCCTCATGTCCATGGTGTCCAGCGC
CATGTGGCTGAGGGAAGAAATAGGAACCCAGGTTGTGCAGGCCGTCAGCC
TGGGGCCGTTCTCCTTCACCCTGAATGGAGTATTCACGGGGGTCATGACC
AGCATTACCTGCCTTCCCGTCATCATGGCCATAGTCCTGCTGTTCCAGTA
CAGCCGACCCAGCAACAAGGGCGACCGGAGGGTCCAAGATGTGGAGACGG
GCGGCCCAGCTAAGGCACCCGCCCCGCAAGAATCAGCCAAGCGCCTGCCG
CACTGGTGCAAGTACGTGGCCTGGGTGCTGGTGGTGCTGTCTGCCGTGGG
GTCAGCTGTCTTCACCGCGCTGTACAGTCTGACGTGGGGCAAGGACAAGT
CCGAGAGGTGGCTGTCAGCATACTTCACCACCTTTCTGGTGGACATGTTT
GTCCTGCAACCAGCAAAGATATTGCTCCTCACAATCTTGACTTCATCCTT
TCGCAAGCCGCAAGCCGTCCAGAAGATTTTTGAAGAGAAGCGGGGCCCCG
TTTCCATTGATGCCAGGACAGTGTCTTCACAAAAGGCACGCTTCAGCTCC
GATACATTTCGCATGAGGAGGAAGATGGAACAACTTTCGATGACATCCCT
TGCCAACATCAAACAAGCGAGAATGAGGCAGCGCAGGGACAGGAGAGTTA
TGAACACCTTTTGGGACATCATGTGGTTCTGCTGTTGCCTCCTGCTTGTC
ATCATTATCTCCAACGAGCACCACAACACCACAGAGGGTTTCTATCAGAC
ACAGAGCATAACCAACACCTTTGTGCAGTCTATGGACGAGGTAAGTCAAG
ATATGTCTGAAATGCCACTGATAGTAGAAGTTGTATTTTACATGGATGAA
TGCCTCTTGCTTGCTGTATTTGATCAAATACGTTGCTCTCATTCTTTATT
ATTGAGACCAACTTGTTTTGATGAAATGTCTCCATTTGTTTCCTTTACAG
ATAGCGCGTTCACCCGCAGCGAGAGGCTCGGCTGCTGCCTGAGTCTCCTC
CTCATGTCCATGGTGTCCAGCGCCATGTGGCTGAGGGAAGAAATAGGAAC
CCAGGTTGTGCAGGCCGTCAGCCTGGGGCCGTTCTCCTTCACCCTGAATG
GAGTATTCACGGGGGTCATGACCAGCATTACCTGCCTTCCCGTCATCATG
GCCATAGTCCTGCTGTTCCAGTACAGCCGACCCAGCAACAAGGGCGACCG
GAGGGTCCAAGATGTGGAGACGGGCGGCCCAGCTAAGGCACCCGCCCCGC
AAGAATCAGCCAAGCGCCTGCCGCACTGGTGCAAGTACGTGGCCTGGGTG
CTGGTGGTGCTGTCTGCCGTGGGGTCAGCTGTCTTCACCGCGCTGTACAG
TCTGACGTGGGGCAAGGACAAGTCCGAGAGGTGGCTGTCAGCATACTTCA
CCACCTTTCTGGTGGACATGTTTGTCCTGCAACCAGCAAAGATATTGCTC
CTCACAATCTTGACTTCATCCTTTCGCAAGCCGCAAGCCGTCCAGAAGAT
TTTTGAAGAGAAGCGGGGCCCCGTTTCCATTGATGCCAGGACAGTGTCTT
CACAAAAGGCACGCTTCAGCTCCGATACATTTCGCATGAGGAGGAAGATG
GAACAACTTTCGATGACATCCCTTGCCAACATCAAACAAGCGAGAATGAG
GCAGCGCAGGGACAGGAGAGTTATGAACACCTTTTGGGACATCATGTGGT
TCTGCTGTTGCCTCCTGCTTGTCATCATTATCTCCAACGAGCACCACAAC
ACCACAGAGGGTTTCTATCAGACACAGAGCATAACCAACACCTTTGTGCA
GTCTATGGACGAGGTAAGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97116gene:BL97116Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97116_cuf5transcript:BL97116_cuf5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97116_cuf5-E1BL97116_cuf5-E1-1564476830-229035Branchiostoma lanceolatumexon
BL97116_cuf5-E2BL97116_cuf5-E2-1564476830-229037Branchiostoma lanceolatumexon
BL97116_cuf5-E3BL97116_cuf5-E3-1564476830-229040Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000052genomeSc0000052:60978..62561 +
Properties
Property NameValue
Transcript idBL97116_cuf5
Biotypeprotein_coding