|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97110_cuf2 >transcript:BL97110_cuf2-protein ID=transcript:BL97110_cuf2-protein|Name=transcript:BL97110_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=139bp
LGGNYPVGRVRIYSRGECCGEHLTFPPPLSADNYASLRLTGDHTLDEFTL
CFRFRTDSRVSGTIISYATSEQSNEILLYAINQQTSHNLFINSNYATRLE
LGVLDGQWHHVCITWTSGRGSWHIYVDGQVKANGTDIAT Run BLAST on NCBI mRNA from alignment at Sc0000191:214823..223285- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97110_cuf2 ID=transcript:BL97110_cuf2|Name=transcript:BL97110_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=8463bp|location=Sequence derived from alignment at Sc0000191:214823..223285- (Branchiostoma lanceolatum)
CCTAGGAGGAAACTACCCTGTCGGGAGGGTTCGCATCTACAGTAGAGGAG
AATGCTGCGGTTAGGATTTTAGATTGCCTTTTTTCTCCTTTGCAACTGAC
CTGCACTCAGTTGGGTGTACGCGCATATATGCATCATAAGATCTACAGAT
ATTTGGTATACAATGATAGTTCTTGCATCTTCAAAACCAGGGAGACTACT
CGACTCACTCTATTCCTATATTCAATAGTTTTCTTGATTATGATCTATAA
TTGTTACTCAATTTCCCATTAAATGTCAATAGGAGAACATCTGACGTTTC
CACCTCCCTTGTCTGCTGACAACTACGCCTCCTTGCGACTTACTGGCGAC
CACACCCTTGACGAGTTTACCCTCTGCTTCCGCTTCCGCACGGATTCCCG
CGTCTCTGGAACAATTATCAGGTACTACAGATCGCATTCACAACAAGTTT
TAAAGGGACAAAGATTTGATATTTGGACCGCCAGTTCATACGCTTTCCTG
AAGTATGTCAGGCAGTTTCTCATAAGCCCATTCGTAAATTCGAGCACGCA
TGTGCAGTGTCAAAGGTGTAGGCCCGAGAGACGTAAATAAAACCCGCCTG
GGCATTGTTATGTAAATCGAGACAATGGTCGAGACGACAACTGCGACAAC
TGTTTCAAAGCCAGAGGCATCCACCTTTGACACTGCACATGCGCAATCGC
ATCTACGAATGCTAGGGATCAGCGAGCTAAGATTGGGGACCCGATTTTGG
TCGATTACTCGCGGCCGTGCACGCGCGTGCATTCGGCCACGCCGTACCGA
CGGTGCACGCGTGCGTGGATTCCGCCACGTATTAGCGGTGGTGCACGCAC
TGTTTGCTTGTGAGGCAGGAATTAGATCGCGCGTGCACACGACCACTTCC
GCCCTTGGTTGCACGCGCGTGGTTAGTGCCATTTACACCGGTGGTGCACG
CATTGATTTCCCACGGACAGATCGCGAGAATTCTGCCAAAAAAGAATGCC
GTGGTCACGCGTGCACCCAGCCACTTCCGCCCTTGGTTGCGCGCGCGTGG
TTAGTGCCATTTACACCGGTGGTGCACGCATTGATTTCCTACGGACAGAT
CGCGAGAATTCTGCCAAAAAAGAATGCCGTGGTCACGCGTGCACCCAGCC
ACTTCCGCCCTTGGTTGCGCGCGCGTGGTTAGTGCCATTTACACCGGTGG
TGCACGCATTGATTTCCTACGGACAGATCGCGAGAATTCTGCCAAAAAAG
AATGCCGTGGTCACGCGTGCACCCAGCCACTTCCGCCCTTGGTTGCGCCT
ACGTGGTTAGTGCCATTTACACCGGTGGTGCACGCATTGATTTCCTACGG
ACAGATCGCGAGAATTCTGCCAAAAAAGAATGCCGTGGTCACGCGTGCAC
CCAGCCACTTCCGCCCTTGGTTGCGCCTGCGTGGTTAGTGCCATTTACAC
CGGTGGTGCACGCATTGATTTCCTACGGACAGATCGCGAGAATTCTGCCA
AAAAAGAATGCCGTGTTCACGCGTGCACCCAGCCACTTCCGCCCTTGGTT
GCGCGCGCGTGGTTAGTGCCATTTACACCGGTGGTGCACGCATTGATTTC
CTACGGACAGATCGCGAGAATTCTGCCAAAAAAGAATGCCGTGGTCACGC
GTGCACCCAGCCACTTCCGCCCTTGGTTGCGCGCGCGTGGTTAGTGCCAT
TTACACCGGTGGTGCACGCATTGATTTCCTACGGACAGATCGCGAGAATT
CTGCCAAAAAAGAATGCCGTGGTCACGCGTGCACCCAGCCACTTCCGCCC
TTGGTTGCGCGCGCGTGGTTAGTGCCATTTACACCGGTGGTGCACGCATT
GATTTCCTACGGACAGATCGCGAGAATTCTGCCAAAAAAGAATGCCGTGG
TCACGCGTGCACCCAGCCACTTCCGCCCTTGGTTGCGCGCGCGTGGTTAG
TGCCATTTACACCGGTGGTGCACGCATTGATTTCCTACGGACAGATCGCG
AGAATTCTGCCAGAAATGAATGCCGTGGTCACGCGTGGTTCATGCCACTC
ACAGCCGGCGGTGCACGCATTGATTTCCATAAGGAAAATAACATAACAAA
AAAAAAAACAGTGCGTCGAAAAGAATCTGCATACCGTACCGTACATAGAT
CACTATGAAAGGCCTCGAATCAAAATAAAGACGCCTAAGAAAGATCTGTA
GTGTCAAAAGCCTTACTCAAATATCACAAAGATACAAATGTTGAAATTCC
CAGCTCGAAATTTCCAAAAATTACTTTCACGTCCAGTAAATTATCACGTT
TGAAAATTCATATGTCGACAAAAAATCCGTACGCATGAAATTTATGAGCG
TCATGATTTCTTGAACGTATGGCACTCCATACAGTTGTCCTATGCATTTA
TTCATCTTACAAACATATATCTTTCGCTGACAATAATATCTGGTAGTGAC
AATAAAGTTGTGACTAGAAAGTAGAAACCTCTAAACTTTCTTTAGAGAAA
AACCATGCACAAGTTTCTTCCTGAAAACTGTATTTTTTTGTACATAGAAT
TCTCTCTGTCCAATAAAAGATTTCTTGAACTAATCTCTAAGGTTGTTGTA
GGAGAAAAGCTAAAATGTATTAAGAACTATCTATAAATAGTTTTTACATT
TTTGTAAAATCCTAGTTTTCCTTCATCTTTCGACAAGTTACGATGAAAAA
TCTTTGTATATACGTGTCATCTAATCGTCTCCTTAATGTGCCGGCAATAT
TGTCTGTAAAGGTGAGAATTTCGGCGGTGAATTATACTGTGAGATGTGAA
CAATGCATGTGTAGTGTGTGCAAGGCGATAATAGATGTCGCTGTTTTTGT
GTGCATAAATATATTGTTTATAGTGGACAATAGAGTCTGGAAATGTGAGA
AACATGCGCGTCGCTTTTTTCTGGCGACTAATTTCTAAGGTCGTGACTGA
TTTCAGCTGTGGAAAACGATTTCGGCTCAAATCAGATTGAGCTCGAGGCT
AGAATTAATGACTGTGAATGAATAATTTTGTGTCTGCATGCCGGAAACGC
TAACAACGGAGCTGACCATCGCTGAGAAAACAAAGGACGCGTCTCAAAAC
AATGGGAATTGAGTCAATTGTGTGTCAGGTTTTCTGTTGTGACGTCGATA
GCACTCGGTGGATAACAAAGCCTTTTGAAACACTAGTACTAGTATACACT
TTTAAGTAAATATCTTTCAGAAAATAGACGTCTTTATTCGTGTTTTGTTG
ACTTCAAGAAAGCCTTGGATTTCGTTTGGAGAGAAGGACTTCGTTACAAA
TTGTTAGAGTCGGGAGTAGGCGACATATGCCGGGGGTAGGCGGCAAATTC
CTATCTGTTCTATTCTTGTAATTCATCTATAGTGACATCAAGTCAGTTTA
TACTACGATAAGGTCCAGAATTACCGATATGTATACCCAAACTTTCTGTC
ATAATCTGAGTATGGATACAGGCAAGCTAAGGTTTTATAAGGCATGCAAA
GCATCATATTCCATGGAAAAATATCTAGAACTAGATAATTTTGATTTACG
CCCAGCAATTAGCAAAATTAGAATTAGTGCCCACCCCCTTGAAATAGAAA
GGGGGCGGTACAAAAAGCTACCTGTGTGTGAAAGAACTTGTAAATACTGC
ATGTCAAGCACGGTGGAAGACGAAAACATTTTATTTCAAGTTGCCCTTTC
TACGATCATGAAAGAAAGGCGCTGTTTCAAGAGGCCACCAAATTCCATCC
AAATTTCTCCATGTTAACAGACAAAAAGAAAACTACTCTCCTCTTAACAT
CACAAAACCCATACATCATAGAAAAAGTGGGATCATTCGTCTTCCACTGT
CTCGGAAAAAGAAGTCAAACCCAAATAAGATAGAATTTAGTGTTAGTATT
TAGACTAGAAAAGTCACATGCTTTATTGTTATCAATTGTCTGTCCGTCCT
TTCATGTTACATGTACTTGCAATTAGCCTACGGGCAAGAACTTGCAATAA
ACTTATTAGACTTAGTATTAGGGTTACAAAAATCCCACTTTTTCATATGT
CATAAGATTTATTTGTGACAGACCATTAACTGTTTTGCATGTTCTCTCTA
TTCACACAGTAGGTGCTCCGTTTAAAAGTGTACGAGGAAGAATACTGAAA
ACAGACTCTTCTTTCGTAAGAGTTTTAATAATCTGTCTATCTTTTTATTG
GGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGAGCACAAAGTAACGTCTAAACGGAACACAAAGTAACGTCGAAAC
GGAGCACAAAGCAACGTCAAAAGGGAGCACAAAGTAACGTCTAAATGGAG
CACAAAGTAACGTCTAAACCGAGCACAAAGTAACGTCTAAACGGCGCAAA
TTAACGTCAAAACGGAGCACAAAGTAACGTCAAAACGGAACACAAACCAG
AACAAACAGAACATGGTCAAAACAAATCGACCGTCTTATAATAAGAATAA
ACGGCATAGCTGGCTTTTCTACGACGATCGATATCGGCGTTCCTGTACAA
AAGAAGAGGGGAACATTTGTATCAGATGCAAATAGTATTCAGCACATTTT
GGTCCTCTGAACTCAAGTATGACGTAATGATCGAGACTTGATTGTGGCAA
ACGTAAATGCTAGTGCTTTGAGGGAATTTATGCACGTAGACATATCAGCT
TTCTTCAAATGCTCGCTTATCTAACTCATAGGTAATTGTCGACCTAGGAA
TCGGCATTTGTTGCACCCCGAAGGTGCCTTTGTTCATTCCTCGCAATGCT
TGGGGCAGACATTGAAAGACACAGATGTGTATTGAAATCTTGACGCTTGA
TAATTTTAAGAGTAGGATATTCCGTTTCCCTTCTTTGTTTAATGAGATAC
AAAGATGGAGGAGTTTGAAAAAGTATTATCCAAAAGCTTTGTGTGAACAA
GGAGGTTTTATCTATATAAAACCTCCTTGGTGTGAACCAGTAAAGCCATG
AAGTCGCACAAGCATCATGGTCGCCCGATGTGCGACACCGTAATTTATTC
ATTATTCTTATGCAAGACCAAAAACCCTGGCTCCATTGTCGCAATACAAA
TGCCATATTGCCCTCGTGGCGTTCATGTAACCGTGAATGAGCCAACCGGT
GATCTTGTTCTTGAACCCGATACAGATCATTAGATTCGAGACCATGAAGG
GATGACAGCATAAGTGTACATGTAGACCTTCATGCCCGAGGCTAGTTTGA
TTAGTAAAATCACGGAGCTAATAAACAGTTTGCCCCGATAGTATCGTAAC
TCACACTCTTAGGTGGACTAGAAAGGTTTGTAATGCAAAGGAGACGTATT
TGTTCCTGATTGATACAGAGCTCCTGTCCCCGCGAATCTGACATTCGACT
CCATCGTTTGAAAACTGAATTAGCCCAGTTCTTTAATACCACGACGCATC
GGTGCCCTTGGTCATTCAACTTGATAGTGATAATAAACACAACTGAATTC
CTTCCGGTGCAAAAACAACAAATATCTACTTAGAAACAATGACAACCCAT
GTCAATTACAAAACGTCGTTTTAAACCCAAATTGAATTGGCAATGTAAAG
GTAATTACAATGCATTGTTATTTTCTTCGAGTCTCCGGAGAGAAAAAGAA
GAGAATGTATTTTGTCTACATATACATATACGTAAAATCCTAGAAGTAAA
TTTACTGATATTAATAAAGTTGGTATTTTACGGGATTCATACGATCCACT
ACTAAGAAACACACGAATTTTAGTGAGGATCGTATGTATTACGTAAAACC
CGTATGCATTTCTTAAAATTCGTATGTATTCCGTAAAACTCGTATGAATT
CCGTAACATTCGTATGAATTCCGTAAAATTTGTATGAATACTTGCACTTC
TGAAATTAGCCGATACTTTCAGAAATGTAGATAATCTGTTTTGCATCTGT
ATATTACATGCAGGTAGCATTGAGTGTACTTGTGTTCGCTCAACCAGAAC
AATAAGGTGTGTGTGTGGCTGTTTTCATTGTAACAGTTTTTTAAAAGTGT
ACTTGTGTTTTTGTAGTTACAATACTGATGTGTGTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTCGCGATCTGTCCGTAGGAAATCAATGCGTGCACCACCGGTGTAAATGG
CCCTAACCTCGCGCGTGCAAGGAAGGCCCGAAGTGACCGTGTGCACGTGC
GAGCACGGCACTTGTTTTAGGCAGTATTATCGCGATCTGTCCGTAGGAAA
TCAATGCGTGCACCACCAGTGTAAATGGCCCTAACCTCGCGCGTGCAAGG
AAGGCTCGAAGTGGCCGTGTGCACGTGCGAGCACGGCACTTGTTTTAGGC
AGTATTATCGCGATCTGTCCGTAGGAAATCAATGCGTGCACCACCGGTGT
AAATGGCCCTAACCTCGCGCGTGCAAGGAAGGCCCGAAGTGGCCGTGTGC
ACGTGCGAGCACGGCACTTGTTTTAGGCAGTATTATCGCGATCTGTCCGT
AGGAAATCAATGCGTGCACCACCGGTGTAAATGGCCCTAACCTCGCGCGT
GCAAGGAAGGCCCGAAGTGGCCGTGTGCACGTGCGACCACGCCACTTGTT
TTGGGCAGTATTATCGCGATCTGTCCGTAGGAAATCAATGCGTGCACCAC
CGCTAGAACGTGGCAGGACGAACGTGCGTGCACCGTCGGTACGGCGTGGC
CGTATATACGCGCGTGCACCGTCGGTACGGCGTGGCCGTATACACGTGCG
TGCACCGTCGGTACGGCGGGGCCGAATGCACGCACGTGCACGGCCGCGAG
TAATCGACCAATATCGGGTACACATGCCTTCCTGGATCAGCGTCATCTTT
TTTCTTGCCGACGAATTACCAAGAAGTTTGGGTATAAATGCGTATCTGAT
ACTCGAAGGCTAGCTATGGTTGCCTTAACAGTCCACTGATGTTTCCCACA
GTTACGCCACTAGTGAGCAGAGCAACGAGATTCTGTTGTACGCCATCAAC
CAGCAAACATCACATAATCTGTTCATCAACAGTAACTACGCTACTAGGGT
TTGTATGCATAACGTTTCACTTTATCATAACTTTGCACTTTATCTTAAAA
ACATTTCATTTCAGCATATATGATCACAATAAACATTATACCTGCACAGT
TTTGTTTAAGAATGCGAATCTTGGCCTACAAATTGATATGTATATTCATT
AGAGCGTTTAAGAACAAACAAGGAAATTCTCCATAATAAGGATCACTACT
TAGATCGTAATCAGTATCTGATTCTGTTATATCACACACTGACGTTTAAA
ATAACAGCTGTGACACCAGACTGTTTCTTTCTCTTTAGCTTGAACTTGGC
GTCCTGGATGGACAGTGGCATCACGTGTGCATCACGTGGACAAGTGGGCG
TGGCTCATGGCACATCTACGTTGACGGACAAGTCAAAGCTAACGGGACCG
ACATTGCCACCGG Coding sequence (CDS) from alignment at Sc0000191:214823..223285- >transcript:BL97110_cuf2 ID=transcript:BL97110_cuf2|Name=transcript:BL97110_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1668bp|location=Sequence derived from alignment at Sc0000191:214823..223285- (Branchiostoma lanceolatum)
CTAGGAGGAAACTACCCTGTCGGGAGGGTTCGCATCTACAGTAGAGGAGA
ATGCTGCGGAGAACATCTGACGTTTCCACCTCCCTTGTCTGCTGACAACT
ACGCCTCCTTGCGACTTACTGGCGACCACACCCTTGACGAGTTTACCCTC
TGCTTCCGCTTCCGCACGGATTCCCGCGTCTCTGGAACAATTATCAGTTA
CGCCACTAGTGAGCAGAGCAACGAGATTCTGTTGTACGCCATCAACCAGC
AAACATCACATAATCTGTTCATCAACAGTAACTACGCTACTAGGCTTGAA
CTTGGCGTCCTGGATGGACAGTGGCATCACGTGTGCATCACGTGGACAAG
TGGGCGTGGCTCATGGCACATCTACGTTGACGGACAAGTCAAAGCTAACG
GGACCGACATTGCCACCCTAGGAGGAAACTACCCTGTCGGGAGGGTTCGC
ATCTACAGTAGAGGAGAATGCTGCGGAGAACATCTGACGTTTCCACCTCC
CTTGTCTGCTGACAACTACGCCTCCTTGCGACTTACTGGCGACCACACCC
TTGACGAGTTTACCCTCTGCTTCCGCTTCCGCACGGATTCCCGCGTCTCT
GGAACAATTATCAGTTACGCCACTAGTGAGCAGAGCAACGAGATTCTGTT
GTACGCCATCAACCAGCAAACATCACATAATCTGTTCATCAACAGTAACT
ACGCTACTAGGCTTGAACTTGGCGTCCTGGATGGACAGTGGCATCACGTG
TGCATCACGTGGACAAGTGGGCGTGGCTCATGGCACATCTACGTTGACGG
ACAAGTCAAAGCTAACGGGACCGACATTGCCACCCTAGGAGGAAACTACC
CTGTCGGGAGGGTTCGCATCTACAGTAGAGGAGAATGCTGCGGAGAACAT
CTGACGTTTCCACCTCCCTTGTCTGCTGACAACTACGCCTCCTTGCGACT
TACTGGCGACCACACCCTTGACGAGTTTACCCTCTGCTTCCGCTTCCGCA
CGGATTCCCGCGTCTCTGGAACAATTATCAGTTACGCCACTAGTGAGCAG
AGCAACGAGATTCTGTTGTACGCCATCAACCAGCAAACATCACATAATCT
GTTCATCAACAGTAACTACGCTACTAGGCTTGAACTTGGCGTCCTGGATG
GACAGTGGCATCACGTGTGCATCACGTGGACAAGTGGGCGTGGCTCATGG
CACATCTACGTTGACGGACAAGTCAAAGCTAACGGGACCGACATTGCCAC
CCTAGGAGGAAACTACCCTGTCGGGAGGGTTCGCATCTACAGTAGAGGAG
AATGCTGCGGAGAACATCTGACGTTTCCACCTCCCTTGTCTGCTGACAAC
TACGCCTCCTTGCGACTTACTGGCGACCACACCCTTGACGAGTTTACCCT
CTGCTTCCGCTTCCGCACGGATTCCCGCGTCTCTGGAACAATTATCAGTT
ACGCCACTAGTGAGCAGAGCAACGAGATTCTGTTGTACGCCATCAACCAG
CAAACATCACATAATCTGTTCATCAACAGTAACTACGCTACTAGGCTTGA
ACTTGGCGTCCTGGATGGACAGTGGCATCACGTGTGCATCACGTGGACAA
GTGGGCGTGGCTCATGGCACATCTACGTTGACGGACAAGTCAAAGCTAAC
GGGACCGACATTGCCACC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000191 | genome | Sc0000191:214823..223285 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97110_cuf2 |
| Biotype | protein_coding |
|
