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transcript:BL97110_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97110_cuf2
Unique Nametranscript:BL97110_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97110_cuf2

>transcript:BL97110_cuf2-protein ID=transcript:BL97110_cuf2-protein|Name=transcript:BL97110_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=139bp
LGGNYPVGRVRIYSRGECCGEHLTFPPPLSADNYASLRLTGDHTLDEFTL
CFRFRTDSRVSGTIISYATSEQSNEILLYAINQQTSHNLFINSNYATRLE
LGVLDGQWHHVCITWTSGRGSWHIYVDGQVKANGTDIAT
Run BLAST on NCBI

mRNA from alignment at Sc0000191:214823..223285-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97110_cuf2 ID=transcript:BL97110_cuf2|Name=transcript:BL97110_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=8463bp|location=Sequence derived from alignment at Sc0000191:214823..223285- (Branchiostoma lanceolatum)
CCTAGGAGGAAACTACCCTGTCGGGAGGGTTCGCATCTACAGTAGAGGAG AATGCTGCGGTTAGGATTTTAGATTGCCTTTTTTCTCCTTTGCAACTGAC CTGCACTCAGTTGGGTGTACGCGCATATATGCATCATAAGATCTACAGAT ATTTGGTATACAATGATAGTTCTTGCATCTTCAAAACCAGGGAGACTACT CGACTCACTCTATTCCTATATTCAATAGTTTTCTTGATTATGATCTATAA TTGTTACTCAATTTCCCATTAAATGTCAATAGGAGAACATCTGACGTTTC CACCTCCCTTGTCTGCTGACAACTACGCCTCCTTGCGACTTACTGGCGAC CACACCCTTGACGAGTTTACCCTCTGCTTCCGCTTCCGCACGGATTCCCG CGTCTCTGGAACAATTATCAGGTACTACAGATCGCATTCACAACAAGTTT TAAAGGGACAAAGATTTGATATTTGGACCGCCAGTTCATACGCTTTCCTG AAGTATGTCAGGCAGTTTCTCATAAGCCCATTCGTAAATTCGAGCACGCA TGTGCAGTGTCAAAGGTGTAGGCCCGAGAGACGTAAATAAAACCCGCCTG GGCATTGTTATGTAAATCGAGACAATGGTCGAGACGACAACTGCGACAAC TGTTTCAAAGCCAGAGGCATCCACCTTTGACACTGCACATGCGCAATCGC ATCTACGAATGCTAGGGATCAGCGAGCTAAGATTGGGGACCCGATTTTGG TCGATTACTCGCGGCCGTGCACGCGCGTGCATTCGGCCACGCCGTACCGA CGGTGCACGCGTGCGTGGATTCCGCCACGTATTAGCGGTGGTGCACGCAC TGTTTGCTTGTGAGGCAGGAATTAGATCGCGCGTGCACACGACCACTTCC GCCCTTGGTTGCACGCGCGTGGTTAGTGCCATTTACACCGGTGGTGCACG CATTGATTTCCCACGGACAGATCGCGAGAATTCTGCCAAAAAAGAATGCC GTGGTCACGCGTGCACCCAGCCACTTCCGCCCTTGGTTGCGCGCGCGTGG TTAGTGCCATTTACACCGGTGGTGCACGCATTGATTTCCTACGGACAGAT CGCGAGAATTCTGCCAAAAAAGAATGCCGTGGTCACGCGTGCACCCAGCC ACTTCCGCCCTTGGTTGCGCGCGCGTGGTTAGTGCCATTTACACCGGTGG TGCACGCATTGATTTCCTACGGACAGATCGCGAGAATTCTGCCAAAAAAG AATGCCGTGGTCACGCGTGCACCCAGCCACTTCCGCCCTTGGTTGCGCCT ACGTGGTTAGTGCCATTTACACCGGTGGTGCACGCATTGATTTCCTACGG ACAGATCGCGAGAATTCTGCCAAAAAAGAATGCCGTGGTCACGCGTGCAC CCAGCCACTTCCGCCCTTGGTTGCGCCTGCGTGGTTAGTGCCATTTACAC CGGTGGTGCACGCATTGATTTCCTACGGACAGATCGCGAGAATTCTGCCA AAAAAGAATGCCGTGTTCACGCGTGCACCCAGCCACTTCCGCCCTTGGTT GCGCGCGCGTGGTTAGTGCCATTTACACCGGTGGTGCACGCATTGATTTC CTACGGACAGATCGCGAGAATTCTGCCAAAAAAGAATGCCGTGGTCACGC GTGCACCCAGCCACTTCCGCCCTTGGTTGCGCGCGCGTGGTTAGTGCCAT TTACACCGGTGGTGCACGCATTGATTTCCTACGGACAGATCGCGAGAATT CTGCCAAAAAAGAATGCCGTGGTCACGCGTGCACCCAGCCACTTCCGCCC TTGGTTGCGCGCGCGTGGTTAGTGCCATTTACACCGGTGGTGCACGCATT GATTTCCTACGGACAGATCGCGAGAATTCTGCCAAAAAAGAATGCCGTGG TCACGCGTGCACCCAGCCACTTCCGCCCTTGGTTGCGCGCGCGTGGTTAG TGCCATTTACACCGGTGGTGCACGCATTGATTTCCTACGGACAGATCGCG AGAATTCTGCCAGAAATGAATGCCGTGGTCACGCGTGGTTCATGCCACTC ACAGCCGGCGGTGCACGCATTGATTTCCATAAGGAAAATAACATAACAAA AAAAAAAACAGTGCGTCGAAAAGAATCTGCATACCGTACCGTACATAGAT CACTATGAAAGGCCTCGAATCAAAATAAAGACGCCTAAGAAAGATCTGTA GTGTCAAAAGCCTTACTCAAATATCACAAAGATACAAATGTTGAAATTCC CAGCTCGAAATTTCCAAAAATTACTTTCACGTCCAGTAAATTATCACGTT TGAAAATTCATATGTCGACAAAAAATCCGTACGCATGAAATTTATGAGCG TCATGATTTCTTGAACGTATGGCACTCCATACAGTTGTCCTATGCATTTA TTCATCTTACAAACATATATCTTTCGCTGACAATAATATCTGGTAGTGAC AATAAAGTTGTGACTAGAAAGTAGAAACCTCTAAACTTTCTTTAGAGAAA AACCATGCACAAGTTTCTTCCTGAAAACTGTATTTTTTTGTACATAGAAT TCTCTCTGTCCAATAAAAGATTTCTTGAACTAATCTCTAAGGTTGTTGTA GGAGAAAAGCTAAAATGTATTAAGAACTATCTATAAATAGTTTTTACATT TTTGTAAAATCCTAGTTTTCCTTCATCTTTCGACAAGTTACGATGAAAAA TCTTTGTATATACGTGTCATCTAATCGTCTCCTTAATGTGCCGGCAATAT TGTCTGTAAAGGTGAGAATTTCGGCGGTGAATTATACTGTGAGATGTGAA CAATGCATGTGTAGTGTGTGCAAGGCGATAATAGATGTCGCTGTTTTTGT GTGCATAAATATATTGTTTATAGTGGACAATAGAGTCTGGAAATGTGAGA AACATGCGCGTCGCTTTTTTCTGGCGACTAATTTCTAAGGTCGTGACTGA TTTCAGCTGTGGAAAACGATTTCGGCTCAAATCAGATTGAGCTCGAGGCT AGAATTAATGACTGTGAATGAATAATTTTGTGTCTGCATGCCGGAAACGC TAACAACGGAGCTGACCATCGCTGAGAAAACAAAGGACGCGTCTCAAAAC AATGGGAATTGAGTCAATTGTGTGTCAGGTTTTCTGTTGTGACGTCGATA GCACTCGGTGGATAACAAAGCCTTTTGAAACACTAGTACTAGTATACACT TTTAAGTAAATATCTTTCAGAAAATAGACGTCTTTATTCGTGTTTTGTTG ACTTCAAGAAAGCCTTGGATTTCGTTTGGAGAGAAGGACTTCGTTACAAA TTGTTAGAGTCGGGAGTAGGCGACATATGCCGGGGGTAGGCGGCAAATTC CTATCTGTTCTATTCTTGTAATTCATCTATAGTGACATCAAGTCAGTTTA TACTACGATAAGGTCCAGAATTACCGATATGTATACCCAAACTTTCTGTC ATAATCTGAGTATGGATACAGGCAAGCTAAGGTTTTATAAGGCATGCAAA GCATCATATTCCATGGAAAAATATCTAGAACTAGATAATTTTGATTTACG CCCAGCAATTAGCAAAATTAGAATTAGTGCCCACCCCCTTGAAATAGAAA GGGGGCGGTACAAAAAGCTACCTGTGTGTGAAAGAACTTGTAAATACTGC ATGTCAAGCACGGTGGAAGACGAAAACATTTTATTTCAAGTTGCCCTTTC TACGATCATGAAAGAAAGGCGCTGTTTCAAGAGGCCACCAAATTCCATCC AAATTTCTCCATGTTAACAGACAAAAAGAAAACTACTCTCCTCTTAACAT CACAAAACCCATACATCATAGAAAAAGTGGGATCATTCGTCTTCCACTGT CTCGGAAAAAGAAGTCAAACCCAAATAAGATAGAATTTAGTGTTAGTATT TAGACTAGAAAAGTCACATGCTTTATTGTTATCAATTGTCTGTCCGTCCT TTCATGTTACATGTACTTGCAATTAGCCTACGGGCAAGAACTTGCAATAA ACTTATTAGACTTAGTATTAGGGTTACAAAAATCCCACTTTTTCATATGT CATAAGATTTATTTGTGACAGACCATTAACTGTTTTGCATGTTCTCTCTA TTCACACAGTAGGTGCTCCGTTTAAAAGTGTACGAGGAAGAATACTGAAA ACAGACTCTTCTTTCGTAAGAGTTTTAATAATCTGTCTATCTTTTTATTG GGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNGAGCACAAAGTAACGTCTAAACGGAACACAAAGTAACGTCGAAAC GGAGCACAAAGCAACGTCAAAAGGGAGCACAAAGTAACGTCTAAATGGAG CACAAAGTAACGTCTAAACCGAGCACAAAGTAACGTCTAAACGGCGCAAA TTAACGTCAAAACGGAGCACAAAGTAACGTCAAAACGGAACACAAACCAG AACAAACAGAACATGGTCAAAACAAATCGACCGTCTTATAATAAGAATAA ACGGCATAGCTGGCTTTTCTACGACGATCGATATCGGCGTTCCTGTACAA AAGAAGAGGGGAACATTTGTATCAGATGCAAATAGTATTCAGCACATTTT GGTCCTCTGAACTCAAGTATGACGTAATGATCGAGACTTGATTGTGGCAA ACGTAAATGCTAGTGCTTTGAGGGAATTTATGCACGTAGACATATCAGCT TTCTTCAAATGCTCGCTTATCTAACTCATAGGTAATTGTCGACCTAGGAA TCGGCATTTGTTGCACCCCGAAGGTGCCTTTGTTCATTCCTCGCAATGCT TGGGGCAGACATTGAAAGACACAGATGTGTATTGAAATCTTGACGCTTGA TAATTTTAAGAGTAGGATATTCCGTTTCCCTTCTTTGTTTAATGAGATAC AAAGATGGAGGAGTTTGAAAAAGTATTATCCAAAAGCTTTGTGTGAACAA GGAGGTTTTATCTATATAAAACCTCCTTGGTGTGAACCAGTAAAGCCATG AAGTCGCACAAGCATCATGGTCGCCCGATGTGCGACACCGTAATTTATTC ATTATTCTTATGCAAGACCAAAAACCCTGGCTCCATTGTCGCAATACAAA TGCCATATTGCCCTCGTGGCGTTCATGTAACCGTGAATGAGCCAACCGGT GATCTTGTTCTTGAACCCGATACAGATCATTAGATTCGAGACCATGAAGG GATGACAGCATAAGTGTACATGTAGACCTTCATGCCCGAGGCTAGTTTGA TTAGTAAAATCACGGAGCTAATAAACAGTTTGCCCCGATAGTATCGTAAC TCACACTCTTAGGTGGACTAGAAAGGTTTGTAATGCAAAGGAGACGTATT TGTTCCTGATTGATACAGAGCTCCTGTCCCCGCGAATCTGACATTCGACT CCATCGTTTGAAAACTGAATTAGCCCAGTTCTTTAATACCACGACGCATC GGTGCCCTTGGTCATTCAACTTGATAGTGATAATAAACACAACTGAATTC CTTCCGGTGCAAAAACAACAAATATCTACTTAGAAACAATGACAACCCAT GTCAATTACAAAACGTCGTTTTAAACCCAAATTGAATTGGCAATGTAAAG GTAATTACAATGCATTGTTATTTTCTTCGAGTCTCCGGAGAGAAAAAGAA GAGAATGTATTTTGTCTACATATACATATACGTAAAATCCTAGAAGTAAA TTTACTGATATTAATAAAGTTGGTATTTTACGGGATTCATACGATCCACT ACTAAGAAACACACGAATTTTAGTGAGGATCGTATGTATTACGTAAAACC CGTATGCATTTCTTAAAATTCGTATGTATTCCGTAAAACTCGTATGAATT CCGTAACATTCGTATGAATTCCGTAAAATTTGTATGAATACTTGCACTTC TGAAATTAGCCGATACTTTCAGAAATGTAGATAATCTGTTTTGCATCTGT ATATTACATGCAGGTAGCATTGAGTGTACTTGTGTTCGCTCAACCAGAAC AATAAGGTGTGTGTGTGGCTGTTTTCATTGTAACAGTTTTTTAAAAGTGT ACTTGTGTTTTTGTAGTTACAATACTGATGTGTGTNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NTCGCGATCTGTCCGTAGGAAATCAATGCGTGCACCACCGGTGTAAATGG CCCTAACCTCGCGCGTGCAAGGAAGGCCCGAAGTGACCGTGTGCACGTGC GAGCACGGCACTTGTTTTAGGCAGTATTATCGCGATCTGTCCGTAGGAAA TCAATGCGTGCACCACCAGTGTAAATGGCCCTAACCTCGCGCGTGCAAGG AAGGCTCGAAGTGGCCGTGTGCACGTGCGAGCACGGCACTTGTTTTAGGC AGTATTATCGCGATCTGTCCGTAGGAAATCAATGCGTGCACCACCGGTGT AAATGGCCCTAACCTCGCGCGTGCAAGGAAGGCCCGAAGTGGCCGTGTGC ACGTGCGAGCACGGCACTTGTTTTAGGCAGTATTATCGCGATCTGTCCGT AGGAAATCAATGCGTGCACCACCGGTGTAAATGGCCCTAACCTCGCGCGT GCAAGGAAGGCCCGAAGTGGCCGTGTGCACGTGCGACCACGCCACTTGTT TTGGGCAGTATTATCGCGATCTGTCCGTAGGAAATCAATGCGTGCACCAC CGCTAGAACGTGGCAGGACGAACGTGCGTGCACCGTCGGTACGGCGTGGC CGTATATACGCGCGTGCACCGTCGGTACGGCGTGGCCGTATACACGTGCG TGCACCGTCGGTACGGCGGGGCCGAATGCACGCACGTGCACGGCCGCGAG TAATCGACCAATATCGGGTACACATGCCTTCCTGGATCAGCGTCATCTTT TTTCTTGCCGACGAATTACCAAGAAGTTTGGGTATAAATGCGTATCTGAT ACTCGAAGGCTAGCTATGGTTGCCTTAACAGTCCACTGATGTTTCCCACA GTTACGCCACTAGTGAGCAGAGCAACGAGATTCTGTTGTACGCCATCAAC CAGCAAACATCACATAATCTGTTCATCAACAGTAACTACGCTACTAGGGT TTGTATGCATAACGTTTCACTTTATCATAACTTTGCACTTTATCTTAAAA ACATTTCATTTCAGCATATATGATCACAATAAACATTATACCTGCACAGT TTTGTTTAAGAATGCGAATCTTGGCCTACAAATTGATATGTATATTCATT AGAGCGTTTAAGAACAAACAAGGAAATTCTCCATAATAAGGATCACTACT TAGATCGTAATCAGTATCTGATTCTGTTATATCACACACTGACGTTTAAA ATAACAGCTGTGACACCAGACTGTTTCTTTCTCTTTAGCTTGAACTTGGC GTCCTGGATGGACAGTGGCATCACGTGTGCATCACGTGGACAAGTGGGCG TGGCTCATGGCACATCTACGTTGACGGACAAGTCAAAGCTAACGGGACCG ACATTGCCACCGG

Coding sequence (CDS) from alignment at Sc0000191:214823..223285-

>transcript:BL97110_cuf2 ID=transcript:BL97110_cuf2|Name=transcript:BL97110_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1668bp|location=Sequence derived from alignment at Sc0000191:214823..223285- (Branchiostoma lanceolatum)
CTAGGAGGAAACTACCCTGTCGGGAGGGTTCGCATCTACAGTAGAGGAGA
ATGCTGCGGAGAACATCTGACGTTTCCACCTCCCTTGTCTGCTGACAACT
ACGCCTCCTTGCGACTTACTGGCGACCACACCCTTGACGAGTTTACCCTC
TGCTTCCGCTTCCGCACGGATTCCCGCGTCTCTGGAACAATTATCAGTTA
CGCCACTAGTGAGCAGAGCAACGAGATTCTGTTGTACGCCATCAACCAGC
AAACATCACATAATCTGTTCATCAACAGTAACTACGCTACTAGGCTTGAA
CTTGGCGTCCTGGATGGACAGTGGCATCACGTGTGCATCACGTGGACAAG
TGGGCGTGGCTCATGGCACATCTACGTTGACGGACAAGTCAAAGCTAACG
GGACCGACATTGCCACCCTAGGAGGAAACTACCCTGTCGGGAGGGTTCGC
ATCTACAGTAGAGGAGAATGCTGCGGAGAACATCTGACGTTTCCACCTCC
CTTGTCTGCTGACAACTACGCCTCCTTGCGACTTACTGGCGACCACACCC
TTGACGAGTTTACCCTCTGCTTCCGCTTCCGCACGGATTCCCGCGTCTCT
GGAACAATTATCAGTTACGCCACTAGTGAGCAGAGCAACGAGATTCTGTT
GTACGCCATCAACCAGCAAACATCACATAATCTGTTCATCAACAGTAACT
ACGCTACTAGGCTTGAACTTGGCGTCCTGGATGGACAGTGGCATCACGTG
TGCATCACGTGGACAAGTGGGCGTGGCTCATGGCACATCTACGTTGACGG
ACAAGTCAAAGCTAACGGGACCGACATTGCCACCCTAGGAGGAAACTACC
CTGTCGGGAGGGTTCGCATCTACAGTAGAGGAGAATGCTGCGGAGAACAT
CTGACGTTTCCACCTCCCTTGTCTGCTGACAACTACGCCTCCTTGCGACT
TACTGGCGACCACACCCTTGACGAGTTTACCCTCTGCTTCCGCTTCCGCA
CGGATTCCCGCGTCTCTGGAACAATTATCAGTTACGCCACTAGTGAGCAG
AGCAACGAGATTCTGTTGTACGCCATCAACCAGCAAACATCACATAATCT
GTTCATCAACAGTAACTACGCTACTAGGCTTGAACTTGGCGTCCTGGATG
GACAGTGGCATCACGTGTGCATCACGTGGACAAGTGGGCGTGGCTCATGG
CACATCTACGTTGACGGACAAGTCAAAGCTAACGGGACCGACATTGCCAC
CCTAGGAGGAAACTACCCTGTCGGGAGGGTTCGCATCTACAGTAGAGGAG
AATGCTGCGGAGAACATCTGACGTTTCCACCTCCCTTGTCTGCTGACAAC
TACGCCTCCTTGCGACTTACTGGCGACCACACCCTTGACGAGTTTACCCT
CTGCTTCCGCTTCCGCACGGATTCCCGCGTCTCTGGAACAATTATCAGTT
ACGCCACTAGTGAGCAGAGCAACGAGATTCTGTTGTACGCCATCAACCAG
CAAACATCACATAATCTGTTCATCAACAGTAACTACGCTACTAGGCTTGA
ACTTGGCGTCCTGGATGGACAGTGGCATCACGTGTGCATCACGTGGACAA
GTGGGCGTGGCTCATGGCACATCTACGTTGACGGACAAGTCAAAGCTAAC
GGGACCGACATTGCCACC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97110gene:BL97110Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97110_cuf2transcript:BL97110_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97110_cuf2-E1BL97110_cuf2-E1-1564476830-378148Branchiostoma lanceolatumexon
BL97110_cuf2-E2BL97110_cuf2-E2-1564476830-378145Branchiostoma lanceolatumexon
BL97110_cuf2-E3BL97110_cuf2-E3-1564476830-378143Branchiostoma lanceolatumexon
BL97110_cuf2-E4BL97110_cuf2-E4-1564476830-378141Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000191genomeSc0000191:214823..223285 -
Properties
Property NameValue
Transcript idBL97110_cuf2
Biotypeprotein_coding