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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97105_cuf6 >transcript:BL97105_cuf6-protein ID=transcript:BL97105_cuf6-protein|Name=transcript:BL97105_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=226bp
VHDGGQHDIDYQHDLSTISVTWGGFLEPHTDIAEYSWMVGTCSGCDDVME
EQHVGLMTEASATDLNLQPGVRYIVTVTACNTADLCTTVSSDGVVPDTSP
PLPGVILDGSSDGDIQYQASRTTIRAHWFNFHDPHTGISHYEWRVGTSAG
AEDILPSTRLHLTEQAFASGLDPPLPLGVQLFVTIRAYNRAGLWVERSSN
GFTVDNTPPSLVTNPAVDSTLGSAVP Run BLAST on NCBI mRNA from alignment at Sc0000001:3570096..3572229- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97105_cuf6 ID=transcript:BL97105_cuf6|Name=transcript:BL97105_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=2134bp|location=Sequence derived from alignment at Sc0000001:3570096..3572229- (Branchiostoma lanceolatum)
CGTCCATGATGGAGGACAACATGACATCGACTACCAGGTAAAAGATCATC
ACTAACAGTAACACACATATTTTTTTACCAAAATCAGTTCAGAAAAGTAT
TCTCTTTAAAGCCAAGCAAGGTCTTTTTTGTCTCTTATTGTTATGTTTCC
CAACTGTCACTACTAATTCCTTTAGTTTGTCTTTAATTTATTCCTTTATT
CTATCTTTCATTCCATTAGCCTGTCTTCCTGCCTTCATTCAACCAATTGT
CTCTTCTTTCTTTATTTCTTTATCTTTTCCATTATAGTTTATCCATTCAT
TCATCTGTGTCTTCCTTTCTTCCCTCAGTCTTTCTTTATGATACCTTAAA
AAGGATAGGTCCTGGCAACAAAACACATTGACAAACTTGTGTTTATTTTG
TACAGCACGACTTATCCACCATCAGCGTCACGTGGGGCGGTTTCCTCGAG
CCTCACACTGACATCGCTGAGTACTCGTGGATGGTCGGCACGTGCTCGGG
TTGTGATGACGTCATGGAAGAACAACATGTCGGACTAATGACTGGTAAAG
GAGAGACCAAACCCACCACAGCTTAGCTTTAGCTATTAGCTTAGATTATG
TAATCAGAATTAATTGCAGATAATCTACTTATAATACCATTTTCATGTTA
TATTACTTTGCATTTAGACCTCGGACAGTAATTTTGCATAATAGCTCAAT
TGCCATTTTACCTCTGAATTACATGTACACACACACACATGGCAACATCA
GGCTCTGACGAACTGATTGAAAAAAAAATCTTAACCTTCTCCCTGCTGCC
TAACTCTGTAACCAGTAAAGAATTGGGTGCCAAACGGCTACTTCAGTGTG
CTCAAGGTAAATAATATACTTTGTTCCTTCTTTTTGTCTTGGCAAATTTG
TAGAGGCCAGCGCAACTGACCTGAACCTCCAGCCTGGGGTGAGGTACATC
GTCACGGTGACAGCCTGTAACACCGCAGACCTCTGTACCACCGTGAGCTC
AGACGGAGTCGTCCCGGACACCTCACCTCCTCTGCCCGGGGTCATTCTAG
ATGGGAGCAGCGATGGTGACATCCAGTACCAGGCATCCAGGTACAGCTTG
TTGTTGTCTTTTGGTGTTGAAGAACAAAAGATATGATAATCAAAGCTGAG
ATTTCTACTCATCAAATTTTTTAATGCTTAGCCTCTCCTTATGAAACTGC
TAAATCTGATACTGTAACATGACTTATAGAAACAAAGTTAGTGAGTGAAA
GGTACTTGGAAATCTATATAATTATATAGTGCCCCACCCCTCTTCCATTA
CATTTTAGTGAAGGTTTGTGGCTTTTGAAAAATGTGTACTATTTGTTTGG
AGATCATAGCCAATCATGTATTTTAAAAAGTTGGAGATGGTGTGGACCAA
CTCTAGGTCTTATGTTGTACATATTTTAGCAGTAATAGAGACTACAGTTG
GCATCTTAAATGAATGAATATAATAAGATATATCCTATTCTTTATTTTTA
ACAGGACAACTATACGGGCCCATTGGTTCAACTTCCATGACCCCCACACT
GGGATCTCCCATTACGAGTGGAGGGTGGGCACGAGTGCAGGTGCTGAGGA
TATCCTGCCGTCCACCAGACTGCACCTCACAGAACAAGCCTTCGCCTCCG
GCTTGGACCCACCGTTGCCTCTGGGCGTTCAGCTGTTCGTCACCATCAGG
GCTTACAATAGGGCAGGTGGGTGGGATGGCAACATCATAGATTATAAGCT
ATTCATTTGCCTGCCTTTCTGTCTATCCATGCATCTATCTATCTTTTATC
TATGTATCCAGATGCCCATATAATAGGACTGGTACATTATGTATATTAAT
GTTCAATTATTGATAGTTTGACATCATTCTGTTTTTATAAGTGCATGTTT
TTGAAACTAGCATTAGGTTACTGAGTATCACAAATAAAGACTCTTAGAGA
AAACTAATTGTTTCATCACGTCAGTGACTTAGTTTGCTTGCAAAAAGTAA
AACGTGCTTGTTACACTCTCACACTCAGGTCTTTGGGTGGAGAGATCTTC
CAACGGGTTCACAGTAGACAACACCCCACCTTCACTGGTTACAAACCCAG
CTGTTGACTCCACACTTGGCTCTGCTGTACCCAA Coding sequence (CDS) from alignment at Sc0000001:3570096..3572229- >transcript:BL97105_cuf6 ID=transcript:BL97105_cuf6|Name=transcript:BL97105_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=3390bp|location=Sequence derived from alignment at Sc0000001:3570096..3572229- (Branchiostoma lanceolatum)
GTCCATGATGGAGGACAACATGACATCGACTACCAGCACGACTTATCCAC
CATCAGCGTCACGTGGGGCGGTTTCCTCGAGCCTCACACTGACATCGCTG
AGTACTCGTGGATGGTCGGCACGTGCTCGGGTTGTGATGACGTCATGGAA
GAACAACATGTCGGACTAATGACTGAGGCCAGCGCAACTGACCTGAACCT
CCAGCCTGGGGTGAGGTACATCGTCACGGTGACAGCCTGTAACACCGCAG
ACCTCTGTACCACCGTGAGCTCAGACGGAGTCGTCCCGGACACCTCACCT
CCTCTGCCCGGGGTCATTCTAGATGGGAGCAGCGATGGTGACATCCAGTA
CCAGGCATCCAGGACAACTATACGGGCCCATTGGTTCAACTTCCATGACC
CCCACACTGGGATCTCCCATTACGAGTGGAGGGTGGGCACGAGTGCAGGT
GCTGAGGATATCCTGCCGTCCACCAGACTGCACCTCACAGAACAAGCCTT
CGCCTCCGGCTTGGACCCACCGTTGCCTCTGGGCGTTCAGCTGTTCGTCA
CCATCAGGGCTTACAATAGGGCAGGTCTTTGGGTGGAGAGATCTTCCAAC
GGGTTCACAGTAGACAACACCCCACCTTCACTGGTTACAAACCCAGCTGT
TGACTCCACACTTGGCTCTGCTGTACCCGTCCATGATGGAGGACAACATG
ACATCGACTACCAGCACGACTTATCCACCATCAGCGTCACGTGGGGCGGT
TTCCTCGAGCCTCACACTGACATCGCTGAGTACTCGTGGATGGTCGGCAC
GTGCTCGGGTTGTGATGACGTCATGGAAGAACAACATGTCGGACTAATGA
CTGAGGCCAGCGCAACTGACCTGAACCTCCAGCCTGGGGTGAGGTACATC
GTCACGGTGACAGCCTGTAACACCGCAGACCTCTGTACCACCGTGAGCTC
AGACGGAGTCGTCCCGGACACCTCACCTCCTCTGCCCGGGGTCATTCTAG
ATGGGAGCAGCGATGGTGACATCCAGTACCAGGCATCCAGGACAACTATA
CGGGCCCATTGGTTCAACTTCCATGACCCCCACACTGGGATCTCCCATTA
CGAGTGGAGGGTGGGCACGAGTGCAGGTGCTGAGGATATCCTGCCGTCCA
CCAGACTGCACCTCACAGAACAAGCCTTCGCCTCCGGCTTGGACCCACCG
TTGCCTCTGGGCGTTCAGCTGTTCGTCACCATCAGGGCTTACAATAGGGC
AGGTCTTTGGGTGGAGAGATCTTCCAACGGGTTCACAGTAGACAACACCC
CACCTTCACTGGTTACAAACCCAGCTGTTGACTCCACACTTGGCTCTGCT
GTACCCGTCCATGATGGAGGACAACATGACATCGACTACCAGCACGACTT
ATCCACCATCAGCGTCACGTGGGGCGGTTTCCTCGAGCCTCACACTGACA
TCGCTGAGTACTCGTGGATGGTCGGCACGTGCTCGGGTTGTGATGACGTC
ATGGAAGAACAACATGTCGGACTAATGACTGAGGCCAGCGCAACTGACCT
GAACCTCCAGCCTGGGGTGAGGTACATCGTCACGGTGACAGCCTGTAACA
CCGCAGACCTCTGTACCACCGTGAGCTCAGACGGAGTCGTCCCGGACACC
TCACCTCCTCTGCCCGGGGTCATTCTAGATGGGAGCAGCGATGGTGACAT
CCAGTACCAGGCATCCAGGACAACTATACGGGCCCATTGGTTCAACTTCC
ATGACCCCCACACTGGGATCTCCCATTACGAGTGGAGGGTGGGCACGAGT
GCAGGTGCTGAGGATATCCTGCCGTCCACCAGACTGCACCTCACAGAACA
AGCCTTCGCCTCCGGCTTGGACCCACCGTTGCCTCTGGGCGTTCAGCTGT
TCGTCACCATCAGGGCTTACAATAGGGCAGGTCTTTGGGTGGAGAGATCT
TCCAACGGGTTCACAGTAGACAACACCCCACCTTCACTGGTTACAAACCC
AGCTGTTGACTCCACACTTGGCTCTGCTGTACCCGTCCATGATGGAGGAC
AACATGACATCGACTACCAGCACGACTTATCCACCATCAGCGTCACGTGG
GGCGGTTTCCTCGAGCCTCACACTGACATCGCTGAGTACTCGTGGATGGT
CGGCACGTGCTCGGGTTGTGATGACGTCATGGAAGAACAACATGTCGGAC
TAATGACTGAGGCCAGCGCAACTGACCTGAACCTCCAGCCTGGGGTGAGG
TACATCGTCACGGTGACAGCCTGTAACACCGCAGACCTCTGTACCACCGT
GAGCTCAGACGGAGTCGTCCCGGACACCTCACCTCCTCTGCCCGGGGTCA
TTCTAGATGGGAGCAGCGATGGTGACATCCAGTACCAGGCATCCAGGACA
ACTATACGGGCCCATTGGTTCAACTTCCATGACCCCCACACTGGGATCTC
CCATTACGAGTGGAGGGTGGGCACGAGTGCAGGTGCTGAGGATATCCTGC
CGTCCACCAGACTGCACCTCACAGAACAAGCCTTCGCCTCCGGCTTGGAC
CCACCGTTGCCTCTGGGCGTTCAGCTGTTCGTCACCATCAGGGCTTACAA
TAGGGCAGGTCTTTGGGTGGAGAGATCTTCCAACGGGTTCACAGTAGACA
ACACCCCACCTTCACTGGTTACAAACCCAGCTGTTGACTCCACACTTGGC
TCTGCTGTACCCGTCCATGATGGAGGACAACATGACATCGACTACCAGCA
CGACTTATCCACCATCAGCGTCACGTGGGGCGGTTTCCTCGAGCCTCACA
CTGACATCGCTGAGTACTCGTGGATGGTCGGCACGTGCTCGGGTTGTGAT
GACGTCATGGAAGAACAACATGTCGGACTAATGACTGAGGCCAGCGCAAC
TGACCTGAACCTCCAGCCTGGGGTGAGGTACATCGTCACGGTGACAGCCT
GTAACACCGCAGACCTCTGTACCACCGTGAGCTCAGACGGAGTCGTCCCG
GACACCTCACCTCCTCTGCCCGGGGTCATTCTAGATGGGAGCAGCGATGG
TGACATCCAGTACCAGGCATCCAGGACAACTATACGGGCCCATTGGTTCA
ACTTCCATGACCCCCACACTGGGATCTCCCATTACGAGTGGAGGGTGGGC
ACGAGTGCAGGTGCTGAGGATATCCTGCCGTCCACCAGACTGCACCTCAC
AGAACAAGCCTTCGCCTCCGGCTTGGACCCACCGTTGCCTCTGGGCGTTC
AGCTGTTCGTCACCATCAGGGCTTACAATAGGGCAGGTCTTTGGGTGGAG
AGATCTTCCAACGGGTTCACAGTAGACAACACCCCACCTTCACTGGTTAC
AAACCCAGCTGTTGACTCCACACTTGGCTCTGCTGTACCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000001 | genome | Sc0000001:3570096..3572229 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97105_cuf6 |
| Biotype | protein_coding |
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