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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97104_cuf5 >transcript:BL97104_cuf5-protein ID=transcript:BL97104_cuf5-protein|Name=transcript:BL97104_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=135bp
MPGKKYFSTVTAVDAAGLRSSPVSSNGITVDSTPPVPVAKLNFGPNLVNN
PSFEQTLGASAWNVSGTAEAVAASGFATRDGQKYLHLHGSVSQRVPTQPG
RKYQLTFHVRHVEKMSLPLQSQEGRVSAPGLHRMF Run BLAST on NCBI mRNA from alignment at Sc0000001:3560143..3562563- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97104_cuf5 ID=transcript:BL97104_cuf5|Name=transcript:BL97104_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=2421bp|location=Sequence derived from alignment at Sc0000001:3560143..3562563- (Branchiostoma lanceolatum)
TTTGAATCAAAACAGGCCACTATATTCAGTCTCTGAACATTTAACTCCTC
AATCCTAAGCTAAGCCTTGGAGCCTTTCTACTACTGATCCAAGCATTAAG
AAACAAACAGGCCACTAGATTCAGTCTCTAAACATTTACATGTAACTCCT
CAATTCTTAGCTTAAAGCCTTGGAGCCTTTCTACTAATGATCCAAGCATT
AAGAAACAAACCAGACCATTAGGTTCATTCTCTGAACATTTAACTCTTCA
ATTTTTCTGCAATTTATTAGATTCCCTTTCTGGTAGGTAGATATCTGTGA
ACATTATTGAGACTGAGACAAAAGTTGCAGAGATTGAGACAAAAATTGCT
GTATAGTCATTTTATATTAATTACATTTTTGGCTACAAGACAAATTAGTC
ACAAATTGGCCTAGGTATCATAATCATGCTGTCACTGCAGAGCTTCAAGT
CTGTGTCCTGCATTGTCAACTTAGCAAATCTTACACTTAGTCTAGTAAAT
CCTTTGTCTTTTTCCTTGCTTGCCAACTTATTATTTATTCATCTATTCAT
TTTTATTGACATATGTACATTGACTCTATCCCTTACAGGTAGACACCATC
GCCCCCACAGCAGGCACAGTGTACGACGGCCTGGGTCTCCACGACGCGGA
CTATCAGAACGACAGTCTCGCCGTGTGGGCCACATGGCACGGTTTCTCTG
ACCTGGAGTCCTACATACATCACTACGTCTGGTGTGTGGGGTCATCTCTC
GGAGCTGAGGACATCCTGCCTTGTAGCGACGTCGGTGTCCAGATTTCTGC
CACTGAGAAACTCACACAGGCTTTGATGCCAGGTAAGTCAGTTTTTGGAT
TGTGAGTCTGTATGTGTGTGTGTGTGTGTGTGTTTGAGTGCATGTGTGTG
TGTGTGTATATATGTGTGGGTGTGTGTGTGTTTGTGTACGTGTGTGTGTG
TGTTTGTGTGTGTGTTTGTGTGTCACTGTGTGTGTGTCCCTCTTTCTTTC
CCTGCGTGTCTCTGTCTATCTCTTTCCCTCATTCTCTCTCTTTCTCCCTC
CGTCTGCCTCTCTCTCTCTCTCTCTCTTTTGGTGGTCCCTTCAATTATTT
TCCCCTTGATCCAAAAATTAAGAATCAGTCCTGTCTATAATGACCACCCT
TCTACTAGTAACAGACAGGCTTGACTACTAGTATATTTAATTTGAGAGTC
GTAAAGCATGCATCTCATACTTTCCGTGTCTGATTACCTTCTCAAGATTC
ATGCACAAGTTTTGGTTGATGAAAACATTTATCAACGGATATTTTATAGT
AGGAGTAAACGACAAAGCATCTCATTTTTCCCATCCATATCCATGACAAC
AGGCAAGAAGTACTTCTCCACAGTCACAGCTGTGGATGCTGCGGGACTGC
GATCATCACCGGTCTCATCAAACGGCATCACAGTGGACTCCACTCCCCCT
GTTCCCGTCGCTAAGCTCAACTTTGGTCCAAACCTCGTCAACAACCCTTC
TTTCGAGCAGACACTTGGAGCATCAGCGTGGAATGTATCAGGTTAGGTTT
GCGTAGTTTTCATTTCGCATTAGGGAAAGAATGGAGTGTTCGCGGAGGTT
TTAAGTACGCGTTTGAACCAATAGTAGCGCTACAGTCTAGGTGGACAAAA
ATTTTGCGTTGGTTTTAACATTTCTGCATTTACAGGTAACCATTTATAAT
GTAGATTATCAATGTCTACATAAGTGAAAGTGAAGGTGTATGGATCATAA
GGCGCCAAGCATTTTGGTAATGTGTTCAAAGAACGCCTGAAAGACACGTT
TGTTTCTGGCTGGAGGCAAGAGATTAGAAGTTACAGCAAGCTACAAACCT
ATTCTAAATTCAAAACTGACTTTACATTTGAGAAGTACCTTTCCTCAATT
CAAAATAAATCATTTGTTGCGAACATAACCAAACTGCGAATTAGCGCACA
CTGTTTAGAAATAGAAAAAGGTCGTCATAATAATGTACGAACTTGCCATA
CATTGTACCCGTTACATTTGTTGCGCAATAAACATTGATTGATTGATTGA
TAAGGCAATAGTTCAATTCTAGGACCGAAATGTATTTTATCATATTATAT
GGGTGCTATGATTAGGATAGTAATGTTAACAATGATTTGTAAAAGAAGGA
TGCAGTTCAATCTATAGCTGTGAAAATGTTCTTTCTAATGATGTAATCCG
TTTGCTTACAGGTACGGCTGAAGCTGTAGCTGCGTCTGGGTTTGCAACCA
GAGACGGACAGAAGTATCTGCATCTTCACGGCAGCGTCTCACAGAGAGTA
CCGACTCAACCCGGCCGTAAGTACCAGCTTACCTTCCACGTCAGACACGT
GGAGAAGATGTCCCTCCCCCTCCAGTCACAGGAGGGGCGGGTTTCAGCAC
CAGGTCTGCACAGGATGTTCA Coding sequence (CDS) from alignment at Sc0000001:3560143..3562563- >transcript:BL97104_cuf5 ID=transcript:BL97104_cuf5|Name=transcript:BL97104_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=1215bp|location=Sequence derived from alignment at Sc0000001:3560143..3562563- (Branchiostoma lanceolatum)
ATGCCAGGCAAGAAGTACTTCTCCACAGTCACAGCTGTGGATGCTGCGGG
ACTGCGATCATCACCGGTCTCATCAAACGGCATCACAGTGGACTCCACTC
CCCCTGTTCCCGTCGCTAAGCTCAACTTTGGTCCAAACCTCGTCAACAAC
CCTTCTTTCGAGCAGACACTTGGAGCATCAGCGTGGAATGTATCAGGTAC
GGCTGAAGCTGTAGCTGCGTCTGGGTTTGCAACCAGAGACGGACAGAAGT
ATCTGCATCTTCACGGCAGCGTCTCACAGAGAGTACCGACTCAACCCGGC
CGTAAGTACCAGCTTACCTTCCACGTCAGACACGTGGAGAAGATGTCCCT
CCCCCTCCAGTCACAGGAGGGGCGGGTTTCAGCACCAGGTCTGCACAGGA
TGTTCATGCCAGGCAAGAAGTACTTCTCCACAGTCACAGCTGTGGATGCT
GCGGGACTGCGATCATCACCGGTCTCATCAAACGGCATCACAGTGGACTC
CACTCCCCCTGTTCCCGTCGCTAAGCTCAACTTTGGTCCAAACCTCGTCA
ACAACCCTTCTTTCGAGCAGACACTTGGAGCATCAGCGTGGAATGTATCA
GGTACGGCTGAAGCTGTAGCTGCGTCTGGGTTTGCAACCAGAGACGGACA
GAAGTATCTGCATCTTCACGGCAGCGTCTCACAGAGAGTACCGACTCAAC
CCGGCCGTAAGTACCAGCTTACCTTCCACGTCAGACACGTGGAGAAGATG
TCCCTCCCCCTCCAGTCACAGGAGGGGCGGGTTTCAGCACCAGGTCTGCA
CAGGATGTTCATGCCAGGCAAGAAGTACTTCTCCACAGTCACAGCTGTGG
ATGCTGCGGGACTGCGATCATCACCGGTCTCATCAAACGGCATCACAGTG
GACTCCACTCCCCCTGTTCCCGTCGCTAAGCTCAACTTTGGTCCAAACCT
CGTCAACAACCCTTCTTTCGAGCAGACACTTGGAGCATCAGCGTGGAATG
TATCAGGTACGGCTGAAGCTGTAGCTGCGTCTGGGTTTGCAACCAGAGAC
GGACAGAAGTATCTGCATCTTCACGGCAGCGTCTCACAGAGAGTACCGAC
TCAACCCGGCCGTAAGTACCAGCTTACCTTCCACGTCAGACACGTGGAGA
AGATGTCCCTCCCCCTCCAGTCACAGGAGGGGCGGGTTTCAGCACCAGGT
CTGCACAGGATGTTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000001 | genome | Sc0000001:3560143..3562563 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97104_cuf5 |
| Biotype | protein_coding |
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