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transcript:BL97104_cuf5 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97104_cuf5
Unique Nametranscript:BL97104_cuf5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97104_cuf5

>transcript:BL97104_cuf5-protein ID=transcript:BL97104_cuf5-protein|Name=transcript:BL97104_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=135bp
MPGKKYFSTVTAVDAAGLRSSPVSSNGITVDSTPPVPVAKLNFGPNLVNN
PSFEQTLGASAWNVSGTAEAVAASGFATRDGQKYLHLHGSVSQRVPTQPG
RKYQLTFHVRHVEKMSLPLQSQEGRVSAPGLHRMF
Run BLAST on NCBI

mRNA from alignment at Sc0000001:3560143..3562563-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97104_cuf5 ID=transcript:BL97104_cuf5|Name=transcript:BL97104_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=2421bp|location=Sequence derived from alignment at Sc0000001:3560143..3562563- (Branchiostoma lanceolatum)
TTTGAATCAAAACAGGCCACTATATTCAGTCTCTGAACATTTAACTCCTC AATCCTAAGCTAAGCCTTGGAGCCTTTCTACTACTGATCCAAGCATTAAG AAACAAACAGGCCACTAGATTCAGTCTCTAAACATTTACATGTAACTCCT CAATTCTTAGCTTAAAGCCTTGGAGCCTTTCTACTAATGATCCAAGCATT AAGAAACAAACCAGACCATTAGGTTCATTCTCTGAACATTTAACTCTTCA ATTTTTCTGCAATTTATTAGATTCCCTTTCTGGTAGGTAGATATCTGTGA ACATTATTGAGACTGAGACAAAAGTTGCAGAGATTGAGACAAAAATTGCT GTATAGTCATTTTATATTAATTACATTTTTGGCTACAAGACAAATTAGTC ACAAATTGGCCTAGGTATCATAATCATGCTGTCACTGCAGAGCTTCAAGT CTGTGTCCTGCATTGTCAACTTAGCAAATCTTACACTTAGTCTAGTAAAT CCTTTGTCTTTTTCCTTGCTTGCCAACTTATTATTTATTCATCTATTCAT TTTTATTGACATATGTACATTGACTCTATCCCTTACAGGTAGACACCATC GCCCCCACAGCAGGCACAGTGTACGACGGCCTGGGTCTCCACGACGCGGA CTATCAGAACGACAGTCTCGCCGTGTGGGCCACATGGCACGGTTTCTCTG ACCTGGAGTCCTACATACATCACTACGTCTGGTGTGTGGGGTCATCTCTC GGAGCTGAGGACATCCTGCCTTGTAGCGACGTCGGTGTCCAGATTTCTGC CACTGAGAAACTCACACAGGCTTTGATGCCAGGTAAGTCAGTTTTTGGAT TGTGAGTCTGTATGTGTGTGTGTGTGTGTGTGTTTGAGTGCATGTGTGTG TGTGTGTATATATGTGTGGGTGTGTGTGTGTTTGTGTACGTGTGTGTGTG TGTTTGTGTGTGTGTTTGTGTGTCACTGTGTGTGTGTCCCTCTTTCTTTC CCTGCGTGTCTCTGTCTATCTCTTTCCCTCATTCTCTCTCTTTCTCCCTC CGTCTGCCTCTCTCTCTCTCTCTCTCTTTTGGTGGTCCCTTCAATTATTT TCCCCTTGATCCAAAAATTAAGAATCAGTCCTGTCTATAATGACCACCCT TCTACTAGTAACAGACAGGCTTGACTACTAGTATATTTAATTTGAGAGTC GTAAAGCATGCATCTCATACTTTCCGTGTCTGATTACCTTCTCAAGATTC ATGCACAAGTTTTGGTTGATGAAAACATTTATCAACGGATATTTTATAGT AGGAGTAAACGACAAAGCATCTCATTTTTCCCATCCATATCCATGACAAC AGGCAAGAAGTACTTCTCCACAGTCACAGCTGTGGATGCTGCGGGACTGC GATCATCACCGGTCTCATCAAACGGCATCACAGTGGACTCCACTCCCCCT GTTCCCGTCGCTAAGCTCAACTTTGGTCCAAACCTCGTCAACAACCCTTC TTTCGAGCAGACACTTGGAGCATCAGCGTGGAATGTATCAGGTTAGGTTT GCGTAGTTTTCATTTCGCATTAGGGAAAGAATGGAGTGTTCGCGGAGGTT TTAAGTACGCGTTTGAACCAATAGTAGCGCTACAGTCTAGGTGGACAAAA ATTTTGCGTTGGTTTTAACATTTCTGCATTTACAGGTAACCATTTATAAT GTAGATTATCAATGTCTACATAAGTGAAAGTGAAGGTGTATGGATCATAA GGCGCCAAGCATTTTGGTAATGTGTTCAAAGAACGCCTGAAAGACACGTT TGTTTCTGGCTGGAGGCAAGAGATTAGAAGTTACAGCAAGCTACAAACCT ATTCTAAATTCAAAACTGACTTTACATTTGAGAAGTACCTTTCCTCAATT CAAAATAAATCATTTGTTGCGAACATAACCAAACTGCGAATTAGCGCACA CTGTTTAGAAATAGAAAAAGGTCGTCATAATAATGTACGAACTTGCCATA CATTGTACCCGTTACATTTGTTGCGCAATAAACATTGATTGATTGATTGA TAAGGCAATAGTTCAATTCTAGGACCGAAATGTATTTTATCATATTATAT GGGTGCTATGATTAGGATAGTAATGTTAACAATGATTTGTAAAAGAAGGA TGCAGTTCAATCTATAGCTGTGAAAATGTTCTTTCTAATGATGTAATCCG TTTGCTTACAGGTACGGCTGAAGCTGTAGCTGCGTCTGGGTTTGCAACCA GAGACGGACAGAAGTATCTGCATCTTCACGGCAGCGTCTCACAGAGAGTA CCGACTCAACCCGGCCGTAAGTACCAGCTTACCTTCCACGTCAGACACGT GGAGAAGATGTCCCTCCCCCTCCAGTCACAGGAGGGGCGGGTTTCAGCAC CAGGTCTGCACAGGATGTTCA

Coding sequence (CDS) from alignment at Sc0000001:3560143..3562563-

>transcript:BL97104_cuf5 ID=transcript:BL97104_cuf5|Name=transcript:BL97104_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=1215bp|location=Sequence derived from alignment at Sc0000001:3560143..3562563- (Branchiostoma lanceolatum)
ATGCCAGGCAAGAAGTACTTCTCCACAGTCACAGCTGTGGATGCTGCGGG
ACTGCGATCATCACCGGTCTCATCAAACGGCATCACAGTGGACTCCACTC
CCCCTGTTCCCGTCGCTAAGCTCAACTTTGGTCCAAACCTCGTCAACAAC
CCTTCTTTCGAGCAGACACTTGGAGCATCAGCGTGGAATGTATCAGGTAC
GGCTGAAGCTGTAGCTGCGTCTGGGTTTGCAACCAGAGACGGACAGAAGT
ATCTGCATCTTCACGGCAGCGTCTCACAGAGAGTACCGACTCAACCCGGC
CGTAAGTACCAGCTTACCTTCCACGTCAGACACGTGGAGAAGATGTCCCT
CCCCCTCCAGTCACAGGAGGGGCGGGTTTCAGCACCAGGTCTGCACAGGA
TGTTCATGCCAGGCAAGAAGTACTTCTCCACAGTCACAGCTGTGGATGCT
GCGGGACTGCGATCATCACCGGTCTCATCAAACGGCATCACAGTGGACTC
CACTCCCCCTGTTCCCGTCGCTAAGCTCAACTTTGGTCCAAACCTCGTCA
ACAACCCTTCTTTCGAGCAGACACTTGGAGCATCAGCGTGGAATGTATCA
GGTACGGCTGAAGCTGTAGCTGCGTCTGGGTTTGCAACCAGAGACGGACA
GAAGTATCTGCATCTTCACGGCAGCGTCTCACAGAGAGTACCGACTCAAC
CCGGCCGTAAGTACCAGCTTACCTTCCACGTCAGACACGTGGAGAAGATG
TCCCTCCCCCTCCAGTCACAGGAGGGGCGGGTTTCAGCACCAGGTCTGCA
CAGGATGTTCATGCCAGGCAAGAAGTACTTCTCCACAGTCACAGCTGTGG
ATGCTGCGGGACTGCGATCATCACCGGTCTCATCAAACGGCATCACAGTG
GACTCCACTCCCCCTGTTCCCGTCGCTAAGCTCAACTTTGGTCCAAACCT
CGTCAACAACCCTTCTTTCGAGCAGACACTTGGAGCATCAGCGTGGAATG
TATCAGGTACGGCTGAAGCTGTAGCTGCGTCTGGGTTTGCAACCAGAGAC
GGACAGAAGTATCTGCATCTTCACGGCAGCGTCTCACAGAGAGTACCGAC
TCAACCCGGCCGTAAGTACCAGCTTACCTTCCACGTCAGACACGTGGAGA
AGATGTCCCTCCCCCTCCAGTCACAGGAGGGGCGGGTTTCAGCACCAGGT
CTGCACAGGATGTTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97104gene:BL97104Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97104_cuf5transcript:BL97104_cuf5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97104_cuf5-E1BL97104_cuf5-E1-1564476830-23928Branchiostoma lanceolatumexon
BL97104_cuf5-E2BL97104_cuf5-E2-1564476830-23925Branchiostoma lanceolatumexon
BL97104_cuf5-E3BL97104_cuf5-E3-1564476830-23923Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:3560143..3562563 -
Properties
Property NameValue
Transcript idBL97104_cuf5
Biotypeprotein_coding