transcript:BL97098_cuf9 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97098_cuf9
Unique Nametranscript:BL97098_cuf9
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97098_cuf9

>transcript:BL97098_cuf9-protein ID=transcript:BL97098_cuf9-protein|Name=transcript:BL97098_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=107bp
MWGVGTSVGADDIVPFHELPHTQHAACTELNRTLQHGGTYYSTLVAFNLG
HAMKNVSVSSDGVLYDATPPEEGWVKDGLDPDNDVTYSSETASVSALWGD
FRDPESD
Run BLAST on NCBI

mRNA from alignment at Sc0000001:3634195..3638545+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97098_cuf9 ID=transcript:BL97098_cuf9|Name=transcript:BL97098_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=4351bp|location=Sequence derived from alignment at Sc0000001:3634195..3638545+ (Branchiostoma lanceolatum)
CTAGCTGTACTACTATAACCTGTTCCTCAACAACACTGTTGGTAAGTTGT
AAATAAACCTTATGTAACTATCAGGTTTCTTATCATTGAAATAGTTCATG
ACTAACGTTGCTTTGATATCAAGAAAACTGTGTTGGACCTCTGGTAAAAC
ATGCCACTAAATATGCAATTACGTTGAATTATGATCAAAATGTACATGTT
CAGCTTCTAAAATAGACTGCAACTGTGTAAGAGGTAAAGTTCTTTTGGAC
TGCCAAATGTTAGATATTCTACATGTATGTCGGGCCTAATTTCTCTGTGT
AATGATGTTAGTTTTCATTCACCTTGTGACCACAGGAAGAGTAGCTTAAT
CTTGCAATTAGCTATTATGGATCTAAATGAAATCAAACTTAAACGCTTTC
TTGCTACAATAATCAGGCTACACGAACATCCTGACGTCTCCGGCCGTGAT
AGTTGACTTCGTCCCCCCGTCCCCCGGACCGCTGGCGAACGTGAGTCTGG
ACGAGACGAACGCGGAGGTGTGTGAGGAGTTTGTACCGGACGAGTGGGAG
GACAGATGTGTGGAGCAGACACCTCTTCCAAACCATAGGTGCGACGTCGT
GCTTTCCAGACATGAGTCGACGCTGTTTGATCCCAGTCTTTCACGCCATT
TGCCCCTTTACTATTAACGTGTTGTTTTCGTTTCACCAAAGCAAACTATT
CTGCCAAATCGGACTGAAGTTCAGGAAAATGATGTAAGTTTTAGAACGTT
CTTTGTATTTGTCGATATACATGTAATAAGCTCAGCGTCATTTGTTGAGT
CTTTATGTGATCCACACAGGGCCATTATAGACGGAGAGGGGTCCGGAACT
GTGTTTAACGGTAACAAGCCTCTGGAAGACCTGCGCTATTTCCGACCTAA
CACTTACGTCACGGGTACGTATCATTCGATGTTATCATCATATAGATAGC
CTTATAAATGTTATCATCAGTACCGAGTTTAAAATCTTCTACATGTAGTG
CGATTATAACAAAATAAGTATTTGCTCTTTATCCAAGGATTTCTAACTTC
TTGTTGATAAAGTCGTCATTTTTTTCATATATCAATATTTACATTAATGT
TTAAGCCAACGATGTTCCGACTTAATCTTATCAAAATTCAATTTTCCAGC
GAATTGGGACGGTTTCCATGACAACGAGACGGGTATTTTCGGGTACACGT
GGACAGTGGGGACGTATCACTGCGATGATGGCGTCCATCCGCACAAGGAC
CCGCACTCGCACCTGTACGGGGAGGACGAGTGGACGCACCAGGGACTCGC
CTACCCGCTGGAGCTGGACGGTGAGTCAAACATGTCTCTACCGACCACTC
AATGGATTTAGAAAAATGGCCGCAGAAGACATGTGGTCACTAAGGTTGCA
TTGGTAATGAATAAAATGATCTAGGGACAAAAACAGTGACCATAATGGAC
AGATGGTCGTTTTCCAGAAGCCATTATAACTTAATGGATGAGATGAAGTG
TCTAACATTGTTGAGTGTGTATCCAGTTCCTTAACAAGCCTTCTTTCTGA
AAAATGTCTGGAAATGGCCACATTAGACACTACAAATCCGATTCTTTTAA
AGCGAATAAAATCATCTAAGAGACCACAAGAAAGCGGACAGGTGGTCCTT
ATCTAGATGCAACCAAAAGCACCAGTCATTATAAAATCTTGAAGCAAGCG
GATTAGATTATGTGTCTAATATTGTTGAGTGTGTATTCAGTTTTCTTAAC
AAGCCTTCTTTCTGAAAAAAAAATATTGCGCATAATGAAATATTGTACAT
AAAGAAAAATTGCTTCAATCGAATAGATGGCTTCTACCACGTGTCCGTCC
GCGCCTTGAACAAGGTTGAGTTCGGCGGCCCCCTAGCGACCACCGTGTGC
CACACCACCCCCTACGTCATCGACACCACACCTCCATTCGTCAACCACGT
CAAACTCATCAGTTACGACGAAGTCACCTACGAACTCATTGTGGAGTACA
ACGTCAGGTAAGGACCAGTAAACGTTTACAAGCATCGAAATGTAAAGTCT
GTCTATCCTAACCACTCAAGACAAGACTTAGGCAGAAGTCAAAATGCTTG
GATCAATGGAATAAATAATCTAAAACTTAAAAAGATGATCATCAAAAGCG
GCACCAACAATGACCAGGTGAGCCTTATGAAGTGGTGGTCAGTAGCAAAT
CTTTGCCTGTTATTTGAGTCTTTTATCCTTTGCCATAATGATAAACAAAC
TAGCCATGGTGCCTCAACAACCAAAAAAGAGGTCAAGGGATAGTAAGTTG
AGGTGAGGAATGATGATAAAACTGTTGCTGTTCCACTGTTGTAATTTAGT
GACCCACTCTCCAACATCCGGGAGGTTGACATCGGGTTGGGGAAGAGCCC
CAGGGATGTGTTCATCAAGGACTGGCATCGTCATGACAACCTTACCCACG
TGGTCCTGTACTATCGGATTCCGGACGGCATTCCTACATGGATCAAAGTC
AGGGCTATCAACAATGGTAAGAGCTGAACCTATGAACGCACACTATAGTA
CTAGAACACATGGCTGATGAACTGTATCCCTTCACATAGACAAAGGCAAT
CATTATGCTTCTGATGCCTGTTTTACTTCCTTTTTAACCTAGCCAGGTAT
CCAAGCCTATGATAGTTCCCGAGTCTCTGCTGCCCTCTCCGCAAATACTA
GATCTAGAGGAGAGGACAGAAGAAACTCGGGAGCTATTATAGGTTTGGAT
ACCAAACAATATTAACCACCAGCGGTCCAAAGTATGTTAAAGACCCAGGC
ATTGATCCTCTGCACGATAAAAAAACCCAACTCACATAAAGATTAAACTA
GGGGTTCAAACGGAGAGAGAAAGACTCAAAAGAGTTTTGCATTACAAGTT
AAACTTTGTATAGCTGTTTTCTGACAATATTTCCTACTGCGTCCGACCAG
TCGACCTGCGAACAGCCAGCCATGCCCCCAGACCCCTGATCGTGGACTTG
ACGCCGCCGGTCCCGGGAACAGTGCATGACGGGGAGACCTACAGCAGGGA
CCGGGCCTTCCAGGCGGTCGGCAACCGGATATGCGCCAGCTGGAAGGACT
TTCACGACGAGGAGAGCGGAATCGGTAACTTTGGTTTCATTAGAAATTAT
TTCTACGAATGTCAAATGATCATTGAGGTACTAGTAGTTGTTCATAGATG
CGTTATAGAAATTCGATATTTTGGTATCTGCCAAATGTAACTACTGGCAC
GAGGACTGCCATAGGATCTACACGATATTCTTCAGTTTTCAGAAATGTAT
CAAATCTTGAAAGAAATAGATGCAGTAATGTATCACCAACCAATCAAGCT
GAACATACACTCTGCCCAGCTACAGATACATACTTGTTAACGGTCATTCA
GCTGTGTATATAATACCATACGTTTTCAAGATTAATCGGATTCTATCTCG
TCGCAACGTGGACTGTATCCAACAGTTTGATGTTGTTACTTCCCATTATA
TGTCAGGTTTTCATTATATGTCAGGTTTTTACATGTGGGGAGTGGGAACT
GAAGTCTATGCAGACGACATCGTCCCGTCCACGAGCTCCCTCACACCCTG
TATTGTATGTAACAGTTTGAATGTTCTTTCCAACTATGTCAGGTTTTTAC
ATGTGGGGAGTGGGAACTTCAGTCGGTGCGGACGACATCGTCCCGTTCCA
CGAGCTCCCTCACACCCAGCACGCCGCCTGTACCGAGCTGAACCGGACCC
TGCAGCACGGCGGGACCTACTACAGCACCCTGGTCGCCTTCAACCTCGGA
CATGCCATGAAAAACGTGTCTGTCTCAAGCGATGGAGGTACGAGAGCCCT
TTCTTACTGCGGTGTTTTAAATGGAAGATTGTCAAGGGTGGTTGGGGCTA
CGTGGTCGACATATTTGGATGGTCGCTTGGAATTTGTAAAATGGCAAAAT
ATGATGAACAGTAACAGTAGCGATAACATCAATACACCAATAACCACTCA
ACAGAGGCGGGGGACGGTACAAACTTCCCTACACCTTTGACCAATTACTG
ACGTAAAGTCTCGTGTCGGTAAGGTCACGTGTCCTTTGTGATTGGTCATT
GGTCATTGGCCCTGATGAAGACTGCAGTACGCACAGCCAAAGACGTGTTT
CTGCAAATTGTAGTGTTATAACAAAATGTAGTGGTTTACTTCAATGACAG
TTCTCGTTGTATCCAGTATTGTATGACGCCACCCCACCGGAGGAGGGCTG
GGTGAAGGACGGCCTTGACCCTGACAATGACGTCACGTACTCGTCCGAAA
CGGCGAGCGTCAGTGCGCTCTGGGGAGACTTCCGGGATCCGGAGTCCGAC
A

Coding sequence (CDS) from alignment at Sc0000001:3634195..3638545+

>transcript:BL97098_cuf9 ID=transcript:BL97098_cuf9|Name=transcript:BL97098_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=642bp|location=Sequence derived from alignment at Sc0000001:3634195..3638545+ (Branchiostoma lanceolatum)
ATGTGGGGAGTGGGAACTTCAGTCGGTGCGGACGACATCGTCCCGTTCCA
CGAGCTCCCTCACACCCAGCACGCCGCCTGTACCGAGCTGAACCGGACCC
TGCAGCACGGCGGGACCTACTACAGCACCCTGGTCGCCTTCAACCTCGGA
CATGCCATGAAAAACGTGTCTGTCTCAAGCGATGGAGTATTGTATGACGC
CACCCCACCGGAGGAGGGCTGGGTGAAGGACGGCCTTGACCCTGACAATG
ACGTCACGTACTCGTCCGAAACGGCGAGCGTCAGTGCGCTCTGGGGAGAC
TTCCGGGATCCGGAGTCCGACATGTGGGGAGTGGGAACTTCAGTCGGTGC
GGACGACATCGTCCCGTTCCACGAGCTCCCTCACACCCAGCACGCCGCCT
GTACCGAGCTGAACCGGACCCTGCAGCACGGCGGGACCTACTACAGCACC
CTGGTCGCCTTCAACCTCGGACATGCCATGAAAAACGTGTCTGTCTCAAG
CGATGGAGTATTGTATGACGCCACCCCACCGGAGGAGGGCTGGGTGAAGG
ACGGCCTTGACCCTGACAATGACGTCACGTACTCGTCCGAAACGGCGAGC
GTCAGTGCGCTCTGGGGAGACTTCCGGGATCCGGAGTCCGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97098gene:BL97098Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97098_cuf9-E1BL97098_cuf9-E1-1564476830-24009Branchiostoma lanceolatumexon
BL97098_cuf9-E2BL97098_cuf9-E2-1564476830-24011Branchiostoma lanceolatumexon
BL97098_cuf9-E3BL97098_cuf9-E3-1564476830-24013Branchiostoma lanceolatumexon
BL97098_cuf9-E4BL97098_cuf9-E4-1564476830-24015Branchiostoma lanceolatumexon
BL97098_cuf9-E5BL97098_cuf9-E5-1564476830-24017Branchiostoma lanceolatumexon
BL97098_cuf9-E6BL97098_cuf9-E6-1564476830-24019Branchiostoma lanceolatumexon
BL97098_cuf9-E7BL97098_cuf9-E7-1564476830-24021Branchiostoma lanceolatumexon
BL97098_cuf9-E8BL97098_cuf9-E8-1564476830-24024Branchiostoma lanceolatumexon
BL97098_cuf9-E9BL97098_cuf9-E9-1564476830-24027Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97098_cuf9transcript:BL97098_cuf9-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:3634195..3638545 +
Properties
Property NameValue
Transcript idBL97098_cuf9
Biotypeprotein_coding