transcript:BL97097_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97097_cuf3
Unique Nametranscript:BL97097_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97097_cuf3

>transcript:BL97097_cuf3-protein ID=transcript:BL97097_cuf3-protein|Name=transcript:BL97097_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=124bp
ASMGLVIRNEMELDLKPLKGGFYVDALDWAYAKVHVGIIGIDYKFLDARV
CFKGQAEYEFNIFQEFNFEEVFRLVKLFDRVIKTVVGNVKNTIIRFKQLL
GRTTGSIDGIFRDIIEAVQNLPNQ
Run BLAST on NCBI

mRNA from alignment at Sc0000001:3618120..3621450+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97097_cuf3 ID=transcript:BL97097_cuf3|Name=transcript:BL97097_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3331bp|location=Sequence derived from alignment at Sc0000001:3618120..3621450+ (Branchiostoma lanceolatum)
TGCGTCCATGGGCCTGGTCATCAGGAACGAGATGGAACTGGATCTGAGTG
AGTGCACATCTTACTAGTGATAATTTCCTGACTGTAAGTTTTGCGTTGAG
ACTACCAATGGATTGTCAACAAGTACTGTTCTAAAATAATGTGCTGTAAC
CCTTTTCACAGAAAAAAAGTATAACCTTCATTATATTTTGACGGATGAAG
GGAGCTGAAACAGCCGAAACGTCCGTGAAATACAATCATTATGGTTGTTG
ATTTGGTCTATTGTAGCTATGGCAATGTTCATTACAGCTGTACAAAACTG
CTAGTACTGGTAGGCTTATTGGACTTCATTTGACGAGTTAAATCCTTTGA
GAATCATTGAAATAATCAATCAATCAATCAATCAATCAATCAATCGTTCT
TTCTGTCTCAATGTATACACCGCAGCGATCAAAGCCTGGCAGTTACTTAA
GGTAAACAAATTGAGGCAATAACAGGGAATTATTGACTCAGTTGCGTGGG
TCCGGGCTTGCTCAAAGATATAGGCTTTTGTCCTGACTTTGATATGTACC
GTTGTACCGATAAGGTAAAAGTCAACAACGCAGTCTAGTCAATAAAACAT
CATTTAGAGTATAAAGCTGTCTCGGGTTATCACAAGAGGGCTGATTAATG
AGCGATGTTTTGTCAAGTAAGGTCTATAATTCAGATAAAGATTTGGTCAT
GGCTATTGCAATTGGGAAGTAATGAAAAAATGAGCTGCTGAATAACAACT
GTCTGAAGACTAGCTTAGTGAACATGAAAATATCTGCCTGAGTGTCAAGT
CACTTCAGGGTTATGGCGAATATACTAGGTACACTTTGCTTCAATGGCGC
TGGCGACCACCTTATTCATCAGACATAGATTAGATTTCTCTTATACACTA
TAAAAATTCATATCATTCAACCTATATTGAGGCGAAGAATAACGACTTTC
TATGGCCAACAGTGCAATGTGGATCACAACGACAGGCGCTTAGGCCAGAG
TAGCCTGGGTGCCATCCTATTTTTACCGGGGGCTCCTACACTCGCTACCT
TCAAAAGCGAGTGTAGGAGCCCCGGTAGAAGTAGAATGGCACCCAGGCTA
AGGCCATGGCACATCAAGGCAGCCTCCGTCCCTTACTCAATAAATGTGCT
GGAAATTTCACGTTATATTGACAAATAATCATGTATGCAAAAAAATCCAA
TGTACCACAAGGACAAACGGACTATCACTAAAACTTTGCCATATTTATAG
AACCGCTGAAGGGTGGGTTCTATGTGGACGCGCTGGACTGGGCGTACGCC
AAGGTGCACGTGGGAATCATCGGCATCGATTACAAATTCCTGGACGCGAG
AGTCTGTTTCAAAGGGCAGGCGGAGTACGAATTCAATATTTTTCAGGTAA
GCAAACTTAGGGTGCCTGTTACAAAAATTAATTTCACGATATTGTAGCGT
GATGTGAACAAATAGAAATCAATTGAAGGGATCTAAGGTGTGTTTGAAGC
TTTAATTTAAGAGTGTTGTAAAATTAGCATATGAATTCAACATTTTCAAG
ATATGGCAGGCGGCCGGACACACATTCTTTTGCACAGACATATATTGCGG
AATATTGGATTGCTTTGTATTGTCCGATCCATATGCGATGTTATGTTTGA
AGAAAAGCTATATGTGGAATATATGTGCGGTTGTGATATTAAGAATTTCT
GTATGACATCAATCTTGAGCTCTTGCTCATCATTTCATTCTACAGGAGTT
CAACTTCGAAGAGGTTTTCCGATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTGA
GGCGAAGAATAACGACTTTCTATGGCCAACAGTGCAATGTGGATCACAAC
GACAGGCGCTTAGGCCAGAGTAGCCTGGGTGCCATCCTATTTTTACCGGG
GGCTCCTACACTCGCTACCTTCAAAAGCGAGTGTAGGAGCCCCGGTAGAA
GTAGAATGGCACCCAGGCTAAGGCCATGGCACATCAAGGCAGCCTCCGTC
CCTTACTCAATAAATGTGCTGGAAATTTCACGTTATATTGACAAATAATC
ATGTATGCAAAAAAATCCAATGTACCACAAGGACAAACGGACTATCACTA
AAACTTTGCCATATTTATAGAACCGCTGAAGGGTGGGTTCTATGTGGACG
CGCTGGACTGGGCGTACGCCAAGGTGCACGTGGGAATCATCGGCATCGAT
TACAAATTCCTGGACGCGAGAGTCTGTTTCAAAGGGCAGGCGGAGTACGA
ATTCAATATTTTTCAGGTAAGCAAACTTAGGGTGCCTGTTACAAAAATTA
ATTTCACGATATTGTAGCGTGATGTGAACAAATAGAAATCAATTGAAGGG
ATCTAAGGTGTGTTTGAAGCTTTAATTTAAGAGTGTTGTAAAATTAGCAT
ATGAATTCAACATTTTCAAGATATGGCAGGCGGCCGGACACACATTCTTT
TGCACAGACATATATTGCGGAATATTGGATTGCTTTGTATTGTCCGATCC
ATATGCGATGTTATGTTTGAAGAAAAGCTATATGTGGAATATATGTGCGG
TTGTGATATTAAGAATTTCTGTATGACATCAATCTTGAGCTCTTGCTCAT
CATTTCATTCTACAGGAGTTCAACTTCGAAGAGGTTTTCCGATTGGTTAA
ACTGTTTGACCGCGTGATCAAGACGGTCGTTGGAAATGTAAAGAACACCA
TCATCCGTTTCAAGCAGCTTCTGGGAAGGTAAGTAGGACTGTGTACTGGC
ACGTAAGTCCGTAACTTAAACATATATACATACATAAATATGAACATGTC
TACTAGGTAAATAGCAATGACCAAATAGCAGCTATGTGGAGGTACAGGGG
AATCAGATATCAAGATATTTTCTCGTGTTATGACTTTGCACACATCGATG
GCAAACCAACAATTAGACCGCAATCAAAGACACTACAAAAGATATCTATG
GGTGACAGAAAACGATCCCTATATAACCTGTACTAAAGTGTCCTTATACC
TAAAGATAACAAGAGGGAGAAACCTTTGTATTTCCATATGCATGGTATGA
TATCTAGCTTTGAGACCAGTATGGTTGAGGACTACATTCTGCAGGATAAC
AAAACTGTTATACCACTTTATTAAGGGCTTTCTATCAAATTGCATGGTTG
CTGTACTAGTGTAACTATAATGATAGTAACGCGATTAGTCAATAATTGAA
ACTTGTTCAATAGAACGACGGGCTCCATAGACGGTATCTTCCGGGACATC
ATAGAAGCGGTACAGAACCTCCCCAACCAAG

Coding sequence (CDS) from alignment at Sc0000001:3618120..3621450+

>transcript:BL97097_cuf3 ID=transcript:BL97097_cuf3|Name=transcript:BL97097_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1488bp|location=Sequence derived from alignment at Sc0000001:3618120..3621450+ (Branchiostoma lanceolatum)
GCGTCCATGGGCCTGGTCATCAGGAACGAGATGGAACTGGATCTGAAACC
GCTGAAGGGTGGGTTCTATGTGGACGCGCTGGACTGGGCGTACGCCAAGG
TGCACGTGGGAATCATCGGCATCGATTACAAATTCCTGGACGCGAGAGTC
TGTTTCAAAGGGCAGGCGGAGTACGAATTCAATATTTTTCAGGAGTTCAA
CTTCGAAGAGGTTTTCCGATTGGTTAAACTGTTTGACCGCGTGATCAAGA
CGGTCGTTGGAAATGTAAAGAACACCATCATCCGTTTCAAGCAGCTTCTG
GGAAGAACGACGGGCTCCATAGACGGTATCTTCCGGGACATCATAGAAGC
GGTACAGAACCTCCCCAACCAAGCGTCCATGGGCCTGGTCATCAGGAACG
AGATGGAACTGGATCTGAAACCGCTGAAGGGTGGGTTCTATGTGGACGCG
CTGGACTGGGCGTACGCCAAGGTGCACGTGGGAATCATCGGCATCGATTA
CAAATTCCTGGACGCGAGAGTCTGTTTCAAAGGGCAGGCGGAGTACGAAT
TCAATATTTTTCAGGAGTTCAACTTCGAAGAGGTTTTCCGATTGGTTAAA
CTGTTTGACCGCGTGATCAAGACGGTCGTTGGAAATGTAAAGAACACCAT
CATCCGTTTCAAGCAGCTTCTGGGAAGAACGACGGGCTCCATAGACGGTA
TCTTCCGGGACATCATAGAAGCGGTACAGAACCTCCCCAACCAAGCGTCC
ATGGGCCTGGTCATCAGGAACGAGATGGAACTGGATCTGAAACCGCTGAA
GGGTGGGTTCTATGTGGACGCGCTGGACTGGGCGTACGCCAAGGTGCACG
TGGGAATCATCGGCATCGATTACAAATTCCTGGACGCGAGAGTCTGTTTC
AAAGGGCAGGCGGAGTACGAATTCAATATTTTTCAGGAGTTCAACTTCGA
AGAGGTTTTCCGATTGGTTAAACTGTTTGACCGCGTGATCAAGACGGTCG
TTGGAAATGTAAAGAACACCATCATCCGTTTCAAGCAGCTTCTGGGAAGA
ACGACGGGCTCCATAGACGGTATCTTCCGGGACATCATAGAAGCGGTACA
GAACCTCCCCAACCAAGCGTCCATGGGCCTGGTCATCAGGAACGAGATGG
AACTGGATCTGAAACCGCTGAAGGGTGGGTTCTATGTGGACGCGCTGGAC
TGGGCGTACGCCAAGGTGCACGTGGGAATCATCGGCATCGATTACAAATT
CCTGGACGCGAGAGTCTGTTTCAAAGGGCAGGCGGAGTACGAATTCAATA
TTTTTCAGGAGTTCAACTTCGAAGAGGTTTTCCGATTGGTTAAACTGTTT
GACCGCGTGATCAAGACGGTCGTTGGAAATGTAAAGAACACCATCATCCG
TTTCAAGCAGCTTCTGGGAAGAACGACGGGCTCCATAGACGGTATCTTCC
GGGACATCATAGAAGCGGTACAGAACCTCCCCAACCAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97097gene:BL97097Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97097_cuf3transcript:BL97097_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97097_cuf3-E1BL97097_cuf3-E1-1564476830-23997Branchiostoma lanceolatumexon
BL97097_cuf3-E2BL97097_cuf3-E2-1564476830-23999Branchiostoma lanceolatumexon
BL97097_cuf3-E3BL97097_cuf3-E3-1564476830-24001Branchiostoma lanceolatumexon
BL97097_cuf3-E4BL97097_cuf3-E4-1564476830-24004Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:3618120..3621450 +
Properties
Property NameValue
Transcript idBL97097_cuf3
Biotypeprotein_coding