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transcript:BL97092_cuf7 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97092_cuf7
Unique Nametranscript:BL97092_cuf7
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97092_cuf7

>transcript:BL97092_cuf7-protein ID=transcript:BL97092_cuf7-protein|Name=transcript:BL97092_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=256bp
LDIDECSSQPCFNNGTCVDAVNSFSCQCPVGYTSDLCEIDIDECESDPCQ
NGATCLDQVGSYTCVCAPAFSGANCETEVPSDFNLEFESSGTVDYVMIDS
IPSLKALTCAFWMRSTDKQNYGTPLSYATSLEDNTFVLTDYNGFVLYIGG
NSKVTDVTANDGRWHHICVTWTSEGGVWRIYKNGYPVDEGQGLGTDSVIP
GGGAFVLGQEQDSLGGDFNAPQSFIGQMSLLQLWDYVLSEDDVFTMATTC
QKNVGN
Run BLAST on NCBI

mRNA from alignment at Sc0000001:7090445..7092864-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97092_cuf7 ID=transcript:BL97092_cuf7|Name=transcript:BL97092_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=2420bp|location=Sequence derived from alignment at Sc0000001:7090445..7092864- (Branchiostoma lanceolatum)
CTTGGATATCGATGAGTGTTCCAGTCAACCCTGTTTCAACAACGGAACCT GTGTTGATGCTGTCAACTCCTTTAGGTGAGTTTGTTACCTGCCATACTAT TCATGGCTGCTAGGGGTCTCTTTTAGACTTTCAATACAAGCACTTACAAG TCTTTCATACCTTCATTCATTGTAGGTCAATCGATATTTACTGCTACCAT GGGATGAATTATACTCAAAATGGTCTTCATTTGTCAAATAAGGAATTCTC TCCTAACAGGATTTTCCTTTTTTAAGAAGTTATATAATTTTTTTTTCTAC CTCAGCTGCCAATGCCCGGTGGGATACACCTCTGATCTGTGTGAGATCGA CATTGATGAGTGTGAGTCTGATCCCTGTCAGAACGGTGCCACCTGCCTGG ACCAGGTGGGCAGCTACACCTGTGTGTGCGCACCTGCCTTCTCAGGCGCC AACTGTGAGACAGGTGAGTGCGATGTTCACTGTCATTTTCACTGTAAATA GTTGTTCAAACCACAACCTCCTAATCCTCCAGGTTACATAAATCTGCCAC TTTGAAAAACAGTGGGCTAGAGACATCTCTAGTGCAGCACCCCCAGGTAT GTACAGGTTTTATGTACAGGAGTCCATTATACTATGGGATGTTGGGTTGG AGATCTGTTTGGACGTACGTTTTCTTGGTGGCTGAATTATGTGATGGAAT TATGTTTTAGTAGATGTTAATCCTTTTGTAGGTAATGAAATGCTCAAGGT ATGCTGATAGCCCTTTTTTTTTACAACAATAACTACATGTACAACAAATG TATCTGATTTTTCTTGCAGAGGTGCCCTCGGATTTCAACCTTGAGTTTGA GAGCTCTGGAACCGTTGATTACGTGATGATTGACAGCATCCCATCACTGA AGGCGCTGACGTGTGCCTTCTGGATGCGCAGCACGGACAAGCAGAACTAC GGGACCCCGCTGTCTTACGCAACAAGCCTAGAGGACAACACATTTGTGCT GACAGACTATAATGGGTTAGTTACCTTTGCCAAGAAGGTTATGTTTTGGG GAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAAAT TATGATTATTTGCATGATAAATGAAAAACACATGATACATCAGTCAAAAA GGTTAGAATCATTTGGCAAAAGTGTGAGATCGTGGAACTCTTAGACTAGT TGTTTTGCAGCCATACATTTCACCTTTATCTTACCTTCCCAGTCATAATC ATCACTTGAATTTGTTCTACAGGCTTAGGTTTTTCTGATGTTGGTAAGTA TGAAAATGAATGAATATTTCATGGAGATATGAGGTCTTTTTGAACTCTTG TTGGTTTTGCAGCCATACATCTCATTTTTATCTTCTAAATACTAACCATT ACAAAGTCTTTAACTTTTTCTACAAGACTAGTACAAGCTTAGGAATTTTC TGATGTTGGTAAGATGATGAAAATGAATGAATATTTTGTGAAAAGCTCGT GATGTTCCCATCTGGAATAAAAAGCTGTTCTTTTTCAATATTTTATTTCA GTTTTGTGCTGTACATCGGTGGGAACAGCAAGGTGACAGACGTGACAGCA AACGACGGTCGCTGGCATCACATCTGTGTCACGTGGACCTCAGAGGGAGG GGTGTGGAGGATCTACAAAAATGGCTACCCGGTGGACGAGGGACAGGGAC TGGGAACGGACAGTGTTATACCAGGTGAGAGATGTAATGGTGATGATGCG CTGTGCTCTGCAGCTACATGTACATGTGTGTGTAGAAATATGCCACAGCT CTCTTCATTTTGTTCTATTGTGATGACTCCATATAAAGGGGAGCACAAAC TGGTCGTGTGGTTGGAAATAACAACTTAGATTGGAGGTTCAACCCCGTTG AATACCACTGGTAGAGGTAGCAGTCCTTCATAGGGATTAACTAGGACACC AGTCCTGTGTATGAGAAGACCCACACCTTGCCATGGTCAAGATCTAAGCA GCATGCTCAAGCAAGAAAGAAGTACCAGGACAATGCTGGAGTGTGTGATC ATGATGGTTAAAGAAAAAAGTGACAGACAAAAGAGATTGAGATTTGAAAC TTAGTTTAAACACCAAAATTAATGATTCTTGATGCTTAATTGACTGAATC ACTGAAAATGATCTTGTTTGATTGAGACGTACTTGAAAATATCTTATATC ATCATTCCTGTCATTCTTATTTGTGGTGCTCATCTTGCTGTTGTTGTTTA CAGGAGGAGGTGCTTTTGTCTTGGGACAAGAACAGGACTCGCTAGGAGGA GACTTCAACGCCCCCCAGTCGTTCATCGGTCAGATGAGCCTCCTACAACT GTGGGACTACGTCCTGTCAGAGGATGACGTCTTCACCATGGCAACCACCT GTCAGAAGAATGTGGGAAAT

Coding sequence (CDS) from alignment at Sc0000001:7090445..7092864-

>transcript:BL97092_cuf7 ID=transcript:BL97092_cuf7|Name=transcript:BL97092_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=3840bp|location=Sequence derived from alignment at Sc0000001:7090445..7092864- (Branchiostoma lanceolatum)
TTGGATATCGATGAGTGTTCCAGTCAACCCTGTTTCAACAACGGAACCTG
TGTTGATGCTGTCAACTCCTTTAGCTGCCAATGCCCGGTGGGATACACCT
CTGATCTGTGTGAGATCGACATTGATGAGTGTGAGTCTGATCCCTGTCAG
AACGGTGCCACCTGCCTGGACCAGGTGGGCAGCTACACCTGTGTGTGCGC
ACCTGCCTTCTCAGGCGCCAACTGTGAGACAGAGGTGCCCTCGGATTTCA
ACCTTGAGTTTGAGAGCTCTGGAACCGTTGATTACGTGATGATTGACAGC
ATCCCATCACTGAAGGCGCTGACGTGTGCCTTCTGGATGCGCAGCACGGA
CAAGCAGAACTACGGGACCCCGCTGTCTTACGCAACAAGCCTAGAGGACA
ACACATTTGTGCTGACAGACTATAATGGTTTTGTGCTGTACATCGGTGGG
AACAGCAAGGTGACAGACGTGACAGCAAACGACGGTCGCTGGCATCACAT
CTGTGTCACGTGGACCTCAGAGGGAGGGGTGTGGAGGATCTACAAAAATG
GCTACCCGGTGGACGAGGGACAGGGACTGGGAACGGACAGTGTTATACCA
GGAGGAGGTGCTTTTGTCTTGGGACAAGAACAGGACTCGCTAGGAGGAGA
CTTCAACGCCCCCCAGTCGTTCATCGGTCAGATGAGCCTCCTACAACTGT
GGGACTACGTCCTGTCAGAGGATGACGTCTTCACCATGGCAACCACCTGT
CAGAAGAATGTGGGAAATTTGGATATCGATGAGTGTTCCAGTCAACCCTG
TTTCAACAACGGAACCTGTGTTGATGCTGTCAACTCCTTTAGCTGCCAAT
GCCCGGTGGGATACACCTCTGATCTGTGTGAGATCGACATTGATGAGTGT
GAGTCTGATCCCTGTCAGAACGGTGCCACCTGCCTGGACCAGGTGGGCAG
CTACACCTGTGTGTGCGCACCTGCCTTCTCAGGCGCCAACTGTGAGACAG
AGGTGCCCTCGGATTTCAACCTTGAGTTTGAGAGCTCTGGAACCGTTGAT
TACGTGATGATTGACAGCATCCCATCACTGAAGGCGCTGACGTGTGCCTT
CTGGATGCGCAGCACGGACAAGCAGAACTACGGGACCCCGCTGTCTTACG
CAACAAGCCTAGAGGACAACACATTTGTGCTGACAGACTATAATGGTTTT
GTGCTGTACATCGGTGGGAACAGCAAGGTGACAGACGTGACAGCAAACGA
CGGTCGCTGGCATCACATCTGTGTCACGTGGACCTCAGAGGGAGGGGTGT
GGAGGATCTACAAAAATGGCTACCCGGTGGACGAGGGACAGGGACTGGGA
ACGGACAGTGTTATACCAGGAGGAGGTGCTTTTGTCTTGGGACAAGAACA
GGACTCGCTAGGAGGAGACTTCAACGCCCCCCAGTCGTTCATCGGTCAGA
TGAGCCTCCTACAACTGTGGGACTACGTCCTGTCAGAGGATGACGTCTTC
ACCATGGCAACCACCTGTCAGAAGAATGTGGGAAATTTGGATATCGATGA
GTGTTCCAGTCAACCCTGTTTCAACAACGGAACCTGTGTTGATGCTGTCA
ACTCCTTTAGCTGCCAATGCCCGGTGGGATACACCTCTGATCTGTGTGAG
ATCGACATTGATGAGTGTGAGTCTGATCCCTGTCAGAACGGTGCCACCTG
CCTGGACCAGGTGGGCAGCTACACCTGTGTGTGCGCACCTGCCTTCTCAG
GCGCCAACTGTGAGACAGAGGTGCCCTCGGATTTCAACCTTGAGTTTGAG
AGCTCTGGAACCGTTGATTACGTGATGATTGACAGCATCCCATCACTGAA
GGCGCTGACGTGTGCCTTCTGGATGCGCAGCACGGACAAGCAGAACTACG
GGACCCCGCTGTCTTACGCAACAAGCCTAGAGGACAACACATTTGTGCTG
ACAGACTATAATGGTTTTGTGCTGTACATCGGTGGGAACAGCAAGGTGAC
AGACGTGACAGCAAACGACGGTCGCTGGCATCACATCTGTGTCACGTGGA
CCTCAGAGGGAGGGGTGTGGAGGATCTACAAAAATGGCTACCCGGTGGAC
GAGGGACAGGGACTGGGAACGGACAGTGTTATACCAGGAGGAGGTGCTTT
TGTCTTGGGACAAGAACAGGACTCGCTAGGAGGAGACTTCAACGCCCCCC
AGTCGTTCATCGGTCAGATGAGCCTCCTACAACTGTGGGACTACGTCCTG
TCAGAGGATGACGTCTTCACCATGGCAACCACCTGTCAGAAGAATGTGGG
AAATTTGGATATCGATGAGTGTTCCAGTCAACCCTGTTTCAACAACGGAA
CCTGTGTTGATGCTGTCAACTCCTTTAGCTGCCAATGCCCGGTGGGATAC
ACCTCTGATCTGTGTGAGATCGACATTGATGAGTGTGAGTCTGATCCCTG
TCAGAACGGTGCCACCTGCCTGGACCAGGTGGGCAGCTACACCTGTGTGT
GCGCACCTGCCTTCTCAGGCGCCAACTGTGAGACAGAGGTGCCCTCGGAT
TTCAACCTTGAGTTTGAGAGCTCTGGAACCGTTGATTACGTGATGATTGA
CAGCATCCCATCACTGAAGGCGCTGACGTGTGCCTTCTGGATGCGCAGCA
CGGACAAGCAGAACTACGGGACCCCGCTGTCTTACGCAACAAGCCTAGAG
GACAACACATTTGTGCTGACAGACTATAATGGTTTTGTGCTGTACATCGG
TGGGAACAGCAAGGTGACAGACGTGACAGCAAACGACGGTCGCTGGCATC
ACATCTGTGTCACGTGGACCTCAGAGGGAGGGGTGTGGAGGATCTACAAA
AATGGCTACCCGGTGGACGAGGGACAGGGACTGGGAACGGACAGTGTTAT
ACCAGGAGGAGGTGCTTTTGTCTTGGGACAAGAACAGGACTCGCTAGGAG
GAGACTTCAACGCCCCCCAGTCGTTCATCGGTCAGATGAGCCTCCTACAA
CTGTGGGACTACGTCCTGTCAGAGGATGACGTCTTCACCATGGCAACCAC
CTGTCAGAAGAATGTGGGAAATTTGGATATCGATGAGTGTTCCAGTCAAC
CCTGTTTCAACAACGGAACCTGTGTTGATGCTGTCAACTCCTTTAGCTGC
CAATGCCCGGTGGGATACACCTCTGATCTGTGTGAGATCGACATTGATGA
GTGTGAGTCTGATCCCTGTCAGAACGGTGCCACCTGCCTGGACCAGGTGG
GCAGCTACACCTGTGTGTGCGCACCTGCCTTCTCAGGCGCCAACTGTGAG
ACAGAGGTGCCCTCGGATTTCAACCTTGAGTTTGAGAGCTCTGGAACCGT
TGATTACGTGATGATTGACAGCATCCCATCACTGAAGGCGCTGACGTGTG
CCTTCTGGATGCGCAGCACGGACAAGCAGAACTACGGGACCCCGCTGTCT
TACGCAACAAGCCTAGAGGACAACACATTTGTGCTGACAGACTATAATGG
TTTTGTGCTGTACATCGGTGGGAACAGCAAGGTGACAGACGTGACAGCAA
ACGACGGTCGCTGGCATCACATCTGTGTCACGTGGACCTCAGAGGGAGGG
GTGTGGAGGATCTACAAAAATGGCTACCCGGTGGACGAGGGACAGGGACT
GGGAACGGACAGTGTTATACCAGGAGGAGGTGCTTTTGTCTTGGGACAAG
AACAGGACTCGCTAGGAGGAGACTTCAACGCCCCCCAGTCGTTCATCGGT
CAGATGAGCCTCCTACAACTGTGGGACTACGTCCTGTCAGAGGATGACGT
CTTCACCATGGCAACCACCTGTCAGAAGAATGTGGGAAAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97092gene:BL97092Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97092_cuf7transcript:BL97092_cuf7-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97092_cuf7-E1BL97092_cuf7-E1-1564476830-28378Branchiostoma lanceolatumexon
BL97092_cuf7-E2BL97092_cuf7-E2-1564476830-28375Branchiostoma lanceolatumexon
BL97092_cuf7-E3BL97092_cuf7-E3-1564476830-28373Branchiostoma lanceolatumexon
BL97092_cuf7-E4BL97092_cuf7-E4-1564476830-28371Branchiostoma lanceolatumexon
BL97092_cuf7-E5BL97092_cuf7-E5-1564476830-28369Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:7090445..7092864 -
Properties
Property NameValue
Transcript idBL97092_cuf7
Biotypeprotein_coding