transcript:BL97089_cuf24 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97089_cuf24
Unique Nametranscript:BL97089_cuf24
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97089_cuf24

>transcript:BL97089_cuf24-protein ID=transcript:BL97089_cuf24-protein|Name=transcript:BL97089_cuf24|organism=Branchiostoma lanceolatum|type=polypeptide|length=191bp
LCQTCISMLQVPQMKTISANGVVGFEQDRKAELTLTLQGIKAEDIVFATS
MEKTLKDDKKSYSMDMQMKYPEIIDASLEAEMLGKDKVWTHVLKAEYSLF
DQKKETIELNQRLRDLRTEDLMKFVATHDFKFSCFPDFHHKLSVNHENHE
KMAKSSIQFDYGKDAFRDNNLKRLSLSSLITDGSDRSKYMY
Run BLAST on NCBI

mRNA from alignment at Sc0000001:1126843..1129226-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97089_cuf24 ID=transcript:BL97089_cuf24|Name=transcript:BL97089_cuf24|organism=Branchiostoma lanceolatum|type=mRNA|length=2384bp|location=Sequence derived from alignment at Sc0000001:1126843..1129226- (Branchiostoma lanceolatum)
GCTGTGCCAAACATGCATCTCCATGCTCCAGGTGCCCCAGATGAAGACAA
TCTCCGCTAACGGCGTGGTCGGGTTCGAGCAGGACAGGAAGGCCGAGCTG
ACCCTGACCCTGCAGGGCATCAAGGCCGAGGACATCGTCTTCGCCACCTC
CATGGAGAAGACCCTGAAGGACGACAAGAAGTCTTACTCTATGGACATGC
AGGTGAGACCCTTATCTGTAGTCTTACGTCTTGCATCTTTAAGTAACTGA
CGGTATCGCCTTAGGAACCAATCTTGTGAAGCTAGACGTTTTGTAAACAG
GTGCTCTTTTTGGGCATGCATCTATCATAGCATAAGCTCTTAGTATCTTT
TGGTAGATTGACGATTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTTG
TCCTCCCTTTAGTTATAGCTGTTCATCCCTAGTGTGAGGAACATTTGTTT
TCATTCGCACCTACAAGGCTTCCTTCCTTCCTCTTTCCTTACGCTGTGAC
TAGTAATCTCGTATCAATGACTGACATTTGTTTCCTCCCCAACCTCCAGA
TGAAGTACCCCGAGATCATCGACGCCTCCCTGGAGGCTGAGATGCTGGGT
AAGGACAAGGTGTGGACCCACGTGCTGAAGGCCGAGTACTCTCTCTTCGA
CCAGAAGAAGGAGACCATCGAGCTCAACCAGAGGTGGGTCACGTCTTGAT
TATCACCTCTTAACCTTCTCCCTGCTGCTAAACCCTGTAACCAACTGGTG
CCCAAAGGCTACTTCAGCAGGGAGAAGGTTAATAGTCTCCATCATTCTCG
CTGGTTGCTGACAAAATAGCACAGATTATGGGTGAGTACGTTTTGATAAC
GCGTTTCCTTCTACATTTTAACCTTCTGCCCGCTGCCTAACCCTGTAATC
AGTACAAGTCTGGTGCCAAACGGCTGCTTCAGCTGGGAGGAGGTTAATAA
TAGTCTCCACCATTCTCGCTGGTTAAGGAAAAAATAGTACCTATAGGTAA
AATGAGTTGAACGATTGACTAGAGGGTGTATCCGGCCACAGAGTTACAGA
TTTTCCGACGGTGAAGACTATTTTAAAAGAGCTCGAGTTTACGGAGTGCA
AGCCCAATGGACCACGTCTGTGCCCTCTTACACTCACTAGAACGGCATCT
CTACTATCTAGGTCAGAAACATCATCCTTGAGACATTTGTGTAATCTGCG
TTGAAATCGGTTTGGGCTGAAGACACATAGAAATAGCAGTGTTATTTCTT
TTGTATTTTCAGGCTGCGTGACCTCCGCACTGAGGACCTCATGAAGTTCG
TCGCTACTCACGACTTCAAGTTCTCTTGCTTCCCTGACTTCCATCACAAG
GTACGGTTTCGATACTTGATCATCCTTTAACGTTTGCAGCTCATTGTCGT
AGCTTGGTTGTACCGTGCACATCCTCCAAACTCTCTTTGTTGTAAGCATT
GAGTTCGACATAACTACCCAATATTCTATCTAATGTATTGAAGTGTGGTC
CTAACGAAAAATAATGCCTGTACATTGAATCACTCGTGTGAATTGACATA
ATGTGCTCACTTGCGGTGGTGACTGATAAAGTGTCAGGAAAGTGAGTCCC
GCTCTATACACCACTCTCTTTATCACTCATTATTTATGTGAGTGGGCCCA
GTAGGCTCCCTTGCGGTACACTGAACAGAGTAAGCCTTAGTGATGACGGT
CCGCTGTTCGTTATAAATCTCGTGTGTTCTCGCGCAGCTTTCCGTCAACC
ACGAGAACCACGAGAAGATGGCCAAGTCCAGCATCCAGTTCGACTACGGC
AAGGACGCCTTCCGCGACAACAACCTGAAGCGCCTCAGCCTCTCCAGCCT
CATCACTGACGGATCCGACAGGTAACTTTTACTATTCTATTCTATTGTGT
TGTGTTGTATTCTATTCTCTATTCTGTTCAGTTCTAGCCTAGCCTAGCCT
AGCCTAGCCTAGCCTAGCCTAGCCTAGCCCAGCCCAGCCCAGCCCAGCCC
AACCCAACCCAGCTTAGTCTAGTCTAGTCTAAGCACATTTGGGCATACAG
TTAGACGAAGGGCGGACAGAGGTGAACTACATGACATGACGTTGAGAATC
TGACATTGACAGAGAGAGTTAACTTTGTTCTAATGTACATGTACCTAACT
CTCCTGCAGGCCCAAGTACATGTACGATGTGAATCAGACATTGATAGTCT
TCGTCCTGATATAGATGATTAAACATGTATAACTCTCCTCCAAGTACGTT
AAGAATCTTACATTGACAAAAAAAGTTAACTTGGTTCTAATGTACATGTA
CCCAACTCTCCCCCAGGTCCAAGTACATGTACGA

Coding sequence (CDS) from alignment at Sc0000001:1126843..1129226-

>transcript:BL97089_cuf24 ID=transcript:BL97089_cuf24|Name=transcript:BL97089_cuf24|organism=Branchiostoma lanceolatum|type=CDS|length=2865bp|location=Sequence derived from alignment at Sc0000001:1126843..1129226- (Branchiostoma lanceolatum)
CTGTGCCAAACATGCATCTCCATGCTCCAGGTGCCCCAGATGAAGACAAT
CTCCGCTAACGGCGTGGTCGGGTTCGAGCAGGACAGGAAGGCCGAGCTGA
CCCTGACCCTGCAGGGCATCAAGGCCGAGGACATCGTCTTCGCCACCTCC
ATGGAGAAGACCCTGAAGGACGACAAGAAGTCTTACTCTATGGACATGCA
GATGAAGTACCCCGAGATCATCGACGCCTCCCTGGAGGCTGAGATGCTGG
GTAAGGACAAGGTGTGGACCCACGTGCTGAAGGCCGAGTACTCTCTCTTC
GACCAGAAGAAGGAGACCATCGAGCTCAACCAGAGGCTGCGTGACCTCCG
CACTGAGGACCTCATGAAGTTCGTCGCTACTCACGACTTCAAGTTCTCTT
GCTTCCCTGACTTCCATCACAAGCTTTCCGTCAACCACGAGAACCACGAG
AAGATGGCCAAGTCCAGCATCCAGTTCGACTACGGCAAGGACGCCTTCCG
CGACAACAACCTGAAGCGCCTCAGCCTCTCCAGCCTCATCACTGACGGAT
CCGACAGGTCCAAGTACATGTACCTGTGCCAAACATGCATCTCCATGCTC
CAGGTGCCCCAGATGAAGACAATCTCCGCTAACGGCGTGGTCGGGTTCGA
GCAGGACAGGAAGGCCGAGCTGACCCTGACCCTGCAGGGCATCAAGGCCG
AGGACATCGTCTTCGCCACCTCCATGGAGAAGACCCTGAAGGACGACAAG
AAGTCTTACTCTATGGACATGCAGATGAAGTACCCCGAGATCATCGACGC
CTCCCTGGAGGCTGAGATGCTGGGTAAGGACAAGGTGTGGACCCACGTGC
TGAAGGCCGAGTACTCTCTCTTCGACCAGAAGAAGGAGACCATCGAGCTC
AACCAGAGGCTGCGTGACCTCCGCACTGAGGACCTCATGAAGTTCGTCGC
TACTCACGACTTCAAGTTCTCTTGCTTCCCTGACTTCCATCACAAGCTTT
CCGTCAACCACGAGAACCACGAGAAGATGGCCAAGTCCAGCATCCAGTTC
GACTACGGCAAGGACGCCTTCCGCGACAACAACCTGAAGCGCCTCAGCCT
CTCCAGCCTCATCACTGACGGATCCGACAGGTCCAAGTACATGTACCTGT
GCCAAACATGCATCTCCATGCTCCAGGTGCCCCAGATGAAGACAATCTCC
GCTAACGGCGTGGTCGGGTTCGAGCAGGACAGGAAGGCCGAGCTGACCCT
GACCCTGCAGGGCATCAAGGCCGAGGACATCGTCTTCGCCACCTCCATGG
AGAAGACCCTGAAGGACGACAAGAAGTCTTACTCTATGGACATGCAGATG
AAGTACCCCGAGATCATCGACGCCTCCCTGGAGGCTGAGATGCTGGGTAA
GGACAAGGTGTGGACCCACGTGCTGAAGGCCGAGTACTCTCTCTTCGACC
AGAAGAAGGAGACCATCGAGCTCAACCAGAGGCTGCGTGACCTCCGCACT
GAGGACCTCATGAAGTTCGTCGCTACTCACGACTTCAAGTTCTCTTGCTT
CCCTGACTTCCATCACAAGCTTTCCGTCAACCACGAGAACCACGAGAAGA
TGGCCAAGTCCAGCATCCAGTTCGACTACGGCAAGGACGCCTTCCGCGAC
AACAACCTGAAGCGCCTCAGCCTCTCCAGCCTCATCACTGACGGATCCGA
CAGGTCCAAGTACATGTACCTGTGCCAAACATGCATCTCCATGCTCCAGG
TGCCCCAGATGAAGACAATCTCCGCTAACGGCGTGGTCGGGTTCGAGCAG
GACAGGAAGGCCGAGCTGACCCTGACCCTGCAGGGCATCAAGGCCGAGGA
CATCGTCTTCGCCACCTCCATGGAGAAGACCCTGAAGGACGACAAGAAGT
CTTACTCTATGGACATGCAGATGAAGTACCCCGAGATCATCGACGCCTCC
CTGGAGGCTGAGATGCTGGGTAAGGACAAGGTGTGGACCCACGTGCTGAA
GGCCGAGTACTCTCTCTTCGACCAGAAGAAGGAGACCATCGAGCTCAACC
AGAGGCTGCGTGACCTCCGCACTGAGGACCTCATGAAGTTCGTCGCTACT
CACGACTTCAAGTTCTCTTGCTTCCCTGACTTCCATCACAAGCTTTCCGT
CAACCACGAGAACCACGAGAAGATGGCCAAGTCCAGCATCCAGTTCGACT
ACGGCAAGGACGCCTTCCGCGACAACAACCTGAAGCGCCTCAGCCTCTCC
AGCCTCATCACTGACGGATCCGACAGGTCCAAGTACATGTACCTGTGCCA
AACATGCATCTCCATGCTCCAGGTGCCCCAGATGAAGACAATCTCCGCTA
ACGGCGTGGTCGGGTTCGAGCAGGACAGGAAGGCCGAGCTGACCCTGACC
CTGCAGGGCATCAAGGCCGAGGACATCGTCTTCGCCACCTCCATGGAGAA
GACCCTGAAGGACGACAAGAAGTCTTACTCTATGGACATGCAGATGAAGT
ACCCCGAGATCATCGACGCCTCCCTGGAGGCTGAGATGCTGGGTAAGGAC
AAGGTGTGGACCCACGTGCTGAAGGCCGAGTACTCTCTCTTCGACCAGAA
GAAGGAGACCATCGAGCTCAACCAGAGGCTGCGTGACCTCCGCACTGAGG
ACCTCATGAAGTTCGTCGCTACTCACGACTTCAAGTTCTCTTGCTTCCCT
GACTTCCATCACAAGCTTTCCGTCAACCACGAGAACCACGAGAAGATGGC
CAAGTCCAGCATCCAGTTCGACTACGGCAAGGACGCCTTCCGCGACAACA
ACCTGAAGCGCCTCAGCCTCTCCAGCCTCATCACTGACGGATCCGACAGG
TCCAAGTACATGTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97089gene:BL97089Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97089_cuf24transcript:BL97089_cuf24-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97089_cuf24-E1BL97089_cuf24-E1-1564476830-20811Branchiostoma lanceolatumexon
BL97089_cuf24-E2BL97089_cuf24-E2-1564476830-20808Branchiostoma lanceolatumexon
BL97089_cuf24-E3BL97089_cuf24-E3-1564476830-20806Branchiostoma lanceolatumexon
BL97089_cuf24-E4BL97089_cuf24-E4-1564476830-20804Branchiostoma lanceolatumexon
BL97089_cuf24-E5BL97089_cuf24-E5-1564476830-20802Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:1126843..1129226 -
Properties
Property NameValue
Transcript idBL97089_cuf24
Biotypeprotein_coding