Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

transcript:BL97088_cuf10 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97088_cuf10
Unique Nametranscript:BL97088_cuf10
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97088_cuf10

>transcript:BL97088_cuf10-protein ID=transcript:BL97088_cuf10-protein|Name=transcript:BL97088_cuf10|organism=Branchiostoma lanceolatum|type=polypeptide|length=365bp
VNLAPYRAALGVSSVDDEGDSKVATSPKLRQQETPKSPAKAYIDYAQLSK
SRERLSDSSSSREQLTDSSERLTESPKPYHHREQPSPRDGGGQASGSEKA
YIDMSQLRGPRKLYLQRSQTEEIHARYPGAESASEEHTPTIQVSSSESIV
RRRLRSFEGDSRGEQQGPAPFARAGIQGEGAEQRSCRQRGRARAATDSAL
FIHEGDSDFEEDRLLARDFARHAERLSLQTPVPESLSVDEGIDVRALSPQ
DLSVDVDLSTKFHDIDRLVSETIKDTLLASTSPYKGGAKASRSKDSLDSG
AVLSPSMSRDVMAMGGSQPSPEGYGSRDEGWSDIDQWILERWNSIDHLME
TWTLTDNPSADVSEC
Run BLAST on NCBI

mRNA from alignment at Sc0000001:8378405..8381736+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97088_cuf10 ID=transcript:BL97088_cuf10|Name=transcript:BL97088_cuf10|organism=Branchiostoma lanceolatum|type=mRNA|length=3332bp|location=Sequence derived from alignment at Sc0000001:8378405..8381736+ (Branchiostoma lanceolatum)
TGTCAATCTCGCACCCTACCGAGCGGCTCTTGGCGTATCCTCTGTCGACG ATGAAGGTGACTCCAAGGTCGCCACCAGTCCCAAGTTAAGACAACAGGAG ACGCCAAAATCACCTGCCAAAGCTTACATCGACTACGCTCAACTCTCAAA ATCGAGAGAGCGCTTGTCGGACTCGTCTAGCTCCAGAGAACAGCTGACAG ATTCCAGCGAGCGCTTGACAGAATCTCCCAAGCCGTACCATCACCGCGAA CAGCCTTCTCCGAGGGACGGAGGCGGCCAGGCGAGCGGATCCGAGAAAGC GTACATCGACATGAGCCAGCTGAGAGGACCCAGAAAACTGTACCTGCAAC GGAGCCAGACTGAGGAGATACACGCAAGGTGGGCACTTTTGCAATGATGC AACTCTTGTCACTTTAGATTTTTGGAAAGACACTGGGAATTTTGAAAATC TAATTAACTTATATTCAACTTCTTCATGATATGAATGTACAGTAAAGTTT CATGTCAACATAAGAGAGGATTCTTATAATCATGGAGATTATATTAGATA CTTGAAATCTAGATAAATAGAAAGTGTTTTATCAAATTTCGAGGGTGCAG TGCTATTTTAGCATCTTGCAAATTGAAAGAAAGTGTTTCTAAATATCAGT TGTTGGATGGTAATGGTAACGATGAGTACTTCTTCCACTACAGATACCCA GGAGCTGAGTCAGCTTCAGAGGAGCACACGCCAACAATACAGGTTTCCAG TTCAGAAAGCATCGTGAGACGGAGACTGCGGTCATTTGAAGGGGATTCCA GAGGTGAACAGCAGGGGCCTGCTCCGTTCGCCAGGGCGGGTATCCAGGGT GAGGGGGCAGAGCAGAGGAGCTGTCGACAACGGGGCAGAGCACGCGCTGC GACCGACAGCGCCCTGTTTATTCACGAGGGAGATAGTGACTTTGAGGAGG ACAGGCTGCTAGCACGTGACTTTGCCCGCCACGCAGAGCGCTTGTCTTTG CAGACTCCAGTTCCTGAGAGTCTGTCTGTAGACGAAGGAATTGATGTCCG CGCGTTGAGTCCTCAAGATCTAAGTGTTGACGTAGATCTAAGTACAAAAT TCCACGATATAGACAGACTTGTGTCGGAGACGATTAAGGACACTCTCCTG GCATCCACTTCTCCTTATAAGGGTGGCGCGAAGGCTTCTCGTTCGAAGGA CAGTTTGGACAGCGGCGCCGTTCTGTCCCCGTCCATGAGTCGGGACGTCA TGGCTATGGGCGGGTCCCAGCCCTCGCCGGAAGGTTACGGATCCCGGGAC GAGGGCTGGTCGGACATCGACCAGTGGATCCTGGAGCGGTGGAACAGCAT TGACCACCTCATGGAGACCTGGACCCTGACAGACAATCCCAGCGCTGACG TCTCCGAGTGTTGATGTCCGACTCTCACAGATCAGTCGTTATAATCCAGA TTAGACATAGCAAAACTAAGAGATCATGTCGTAGTAACATTCATCATTTG ATGTGGTGTAAAAGGTAACTCTTGTGATTGTTGCATGTTACAAACATGCC ATAGACACAAGTTCAAAACATTACAGAACACTATCCACCAAGATGTGAAC GTCTACTCTTCAACAGATGTTATCTATTTCATGTTACTCTCAGAACCAAA CATACAATCACTTCTGGATCAGAAGAACTAAAAGTGATATTGACACAAAA TCCTGACAACTTTAGTTGAGACCTGTAACCAGTACTAGTAGGTTGTAGCA TGCAGACATGTAAAAGTAACTTCATAGACAAGGTCCAGTATTAGATGAAA GTAACCACTGCCAACTTAGATGTGAAAAATTTCAGTAGGGGGAGGGGGGC TGTGCTGTCATTGCCATGAATTGTAATGCAAAAAGTACTATTCCTGAGTC GTGTTAGTTTTTTTTCTCTGTGATGGGAACAAATTATTTGTGCCATCCAT TCAATGTGAAACTTTGTCAATGTTATTTTTTGTGAGTTACACCTGTAAGA TACTGGAGAAGCTGGTGTGACAATGATAATCAGGTCCGAACTTTTCAAGG AACTTCTCTTTTTGTGTCAATGATAATAGGTTAACCCTTTTTGGCTAACT TGTGCTGTAAGTGGTACACTTCTCATTCCTAGATGAACCCATGACAAGGA GAAGGTTAATATGCTTCTGTAAGTTAATATGGAAAAGAGATAATTTTTTT TTCAATTGTTAAGTGTGGTACTAGCGAGACTAACAAGTGTCTGATCTGGC TGTGTTTATGTCTGGTGCTAAGACCCAAGAAGTAATACAGCAGAAAGTCT GCTTTTGTTCTAGTTCAGAGGAAGTTTGGTTGACATTGTTGGACAGTGTC CCGTTGCCATGACAATATGATAAAGGCCGTGGAATTTCATCCACAGATTC AGGAGAATCGCGAANTTCATCCACAGATTCAGGAGAGTCGCGAAAGGGAG AATTTTGTATGAGCTGAGGGAGAATTATGACTGGAAATTTTGTAATAGTT CTATATGTACTGGAATGTAATGAATCAGGATTTACTGAAAAGGAATTATG GACAATAGAGGTCTTTTTTAAAAATATGAATATTATTGTCATGATTCAAG CAGTGTTATGACACTAGTGTGCAGAAACAACTACACTGTTTTGATGTTCT GTGTATTACATATAGCTACCCCAGCAAGACTTATACCTGTACTTCAGTCG GAAGATTACAAGACAATTGTTGTCGTTGACTTGTTTCTATTAACCCAGAA ATGTTATTTGTTCCCCTCTCGTTTGCAGGGAAGCATGTACGTGTATATCT CAATTCGATCGTGCCATATTTGTATTTATAACATCCTTTTTTAACTGGTC TTTCAAGTCACATTGTAACAAGTGCACACCAAATATGTTTATCGTCCTTA TTTATTTTTTGAAGAGTGGCACTTAATTCATATTTTGTACTAATGTCTGT GTCAAATTGCCAAATTTTTTTCTTCTACTCATTTATAGAATGGAATAAGC TCCTTTGTTAGTGAGAACCAAAATGTCTCCTGTATGGTAAGAGTGGTAAG AATATTTGACATGTATATTTATTCTAGTAAAGGGGAGGTAATGTGTAGTC GTTAGCTCCAAATGTAATCATGTACAATCCTTAAAACAATGGATGTGTAA TTAATCAAAGAATCATGTTTATTTATTCCTATTATTATCTTTATTATTCT AATGAGAAAAAAGTTGACTTATTCTGTGTCATGGTGTACATTAGACTGTA TTTAAAATAAAGCCATTCTAAAGCAGTTCATCTTTTGTGTCTAATGCTTG AAAATGTGTTACTTAACAGTCTCAAGAATCTA

Coding sequence (CDS) from alignment at Sc0000001:8378405..8381736+

>transcript:BL97088_cuf10 ID=transcript:BL97088_cuf10|Name=transcript:BL97088_cuf10|organism=Branchiostoma lanceolatum|type=CDS|length=2196bp|location=Sequence derived from alignment at Sc0000001:8378405..8381736+ (Branchiostoma lanceolatum)
GTCAATCTCGCACCCTACCGAGCGGCTCTTGGCGTATCCTCTGTCGACGA
TGAAGGTGACTCCAAGGTCGCCACCAGTCCCAAGTTAAGACAACAGGAGA
CGCCAAAATCACCTGCCAAAGCTTACATCGACTACGCTCAACTCTCAAAA
TCGAGAGAGCGCTTGTCGGACTCGTCTAGCTCCAGAGAACAGCTGACAGA
TTCCAGCGAGCGCTTGACAGAATCTCCCAAGCCGTACCATCACCGCGAAC
AGCCTTCTCCGAGGGACGGAGGCGGCCAGGCGAGCGGATCCGAGAAAGCG
TACATCGACATGAGCCAGCTGAGAGGACCCAGAAAACTGTACCTGCAACG
GAGCCAGACTGAGGAGATACACGCAAGATACCCAGGAGCTGAGTCAGCTT
CAGAGGAGCACACGCCAACAATACAGGTTTCCAGTTCAGAAAGCATCGTG
AGACGGAGACTGCGGTCATTTGAAGGGGATTCCAGAGGTGAACAGCAGGG
GCCTGCTCCGTTCGCCAGGGCGGGTATCCAGGGTGAGGGGGCAGAGCAGA
GGAGCTGTCGACAACGGGGCAGAGCACGCGCTGCGACCGACAGCGCCCTG
TTTATTCACGAGGGAGATAGTGACTTTGAGGAGGACAGGCTGCTAGCACG
TGACTTTGCCCGCCACGCAGAGCGCTTGTCTTTGCAGACTCCAGTTCCTG
AGAGTCTGTCTGTAGACGAAGGAATTGATGTCCGCGCGTTGAGTCCTCAA
GATCTAAGTGTTGACGTAGATCTAAGTACAAAATTCCACGATATAGACAG
ACTTGTGTCGGAGACGATTAAGGACACTCTCCTGGCATCCACTTCTCCTT
ATAAGGGTGGCGCGAAGGCTTCTCGTTCGAAGGACAGTTTGGACAGCGGC
GCCGTTCTGTCCCCGTCCATGAGTCGGGACGTCATGGCTATGGGCGGGTC
CCAGCCCTCGCCGGAAGGTTACGGATCCCGGGACGAGGGCTGGTCGGACA
TCGACCAGTGGATCCTGGAGCGGTGGAACAGCATTGACCACCTCATGGAG
ACCTGGACCCTGACAGACAATCCCAGCGCTGACGTCTCCGAGTGTTGAGT
CAATCTCGCACCCTACCGAGCGGCTCTTGGCGTATCCTCTGTCGACGATG
AAGGTGACTCCAAGGTCGCCACCAGTCCCAAGTTAAGACAACAGGAGACG
CCAAAATCACCTGCCAAAGCTTACATCGACTACGCTCAACTCTCAAAATC
GAGAGAGCGCTTGTCGGACTCGTCTAGCTCCAGAGAACAGCTGACAGATT
CCAGCGAGCGCTTGACAGAATCTCCCAAGCCGTACCATCACCGCGAACAG
CCTTCTCCGAGGGACGGAGGCGGCCAGGCGAGCGGATCCGAGAAAGCGTA
CATCGACATGAGCCAGCTGAGAGGACCCAGAAAACTGTACCTGCAACGGA
GCCAGACTGAGGAGATACACGCAAGATACCCAGGAGCTGAGTCAGCTTCA
GAGGAGCACACGCCAACAATACAGGTTTCCAGTTCAGAAAGCATCGTGAG
ACGGAGACTGCGGTCATTTGAAGGGGATTCCAGAGGTGAACAGCAGGGGC
CTGCTCCGTTCGCCAGGGCGGGTATCCAGGGTGAGGGGGCAGAGCAGAGG
AGCTGTCGACAACGGGGCAGAGCACGCGCTGCGACCGACAGCGCCCTGTT
TATTCACGAGGGAGATAGTGACTTTGAGGAGGACAGGCTGCTAGCACGTG
ACTTTGCCCGCCACGCAGAGCGCTTGTCTTTGCAGACTCCAGTTCCTGAG
AGTCTGTCTGTAGACGAAGGAATTGATGTCCGCGCGTTGAGTCCTCAAGA
TCTAAGTGTTGACGTAGATCTAAGTACAAAATTCCACGATATAGACAGAC
TTGTGTCGGAGACGATTAAGGACACTCTCCTGGCATCCACTTCTCCTTAT
AAGGGTGGCGCGAAGGCTTCTCGTTCGAAGGACAGTTTGGACAGCGGCGC
CGTTCTGTCCCCGTCCATGAGTCGGGACGTCATGGCTATGGGCGGGTCCC
AGCCCTCGCCGGAAGGTTACGGATCCCGGGACGAGGGCTGGTCGGACATC
GACCAGTGGATCCTGGAGCGGTGGAACAGCATTGACCACCTCATGGAGAC
CTGGACCCTGACAGACAATCCCAGCGCTGACGTCTCCGAGTGTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97088gene:BL97088Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97088_cuf10-E1BL97088_cuf10-E1-1564476830-29892Branchiostoma lanceolatumexon
BL97088_cuf10-E2BL97088_cuf10-E2-1564476830-29895Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97088_cuf10transcript:BL97088_cuf10-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:8378405..8381736 +
Properties
Property NameValue
Transcript idBL97088_cuf10
Biotypeprotein_coding