transcript:BL97085_cuf9 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97085_cuf9
Unique Nametranscript:BL97085_cuf9
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97085_cuf9

>transcript:BL97085_cuf9-protein ID=transcript:BL97085_cuf9-protein|Name=transcript:BL97085_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=234bp
GFPQSESLCHTQVETMAVKDRDPLAHYQYDVTVVTGFRRNAGTSGNVNIR
LIGDYGESELHTLSDPLTNRKVLQRGSIDSFLITTRDWLGQIKEIAIRID
NVGKSQSWYLSRVMVRDLQTDQRWHFLSNRWLTTDQDRREFEIHLPVTDE
NELRQALPLFVARALFGLRNDHLWFSILTRSPRSSFTRVQRMTCCLITLL
CQMVAAIIFHAISGYSSLGEFRLGWEQLIVGVES
Run BLAST on NCBI

mRNA from alignment at Sc0000001:9629284..9630903+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97085_cuf9 ID=transcript:BL97085_cuf9|Name=transcript:BL97085_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=1620bp|location=Sequence derived from alignment at Sc0000001:9629284..9630903+ (Branchiostoma lanceolatum)
GGGGTTCCCACAATCAGAGTCTCTCTGCCACACTCAGGTTGAAACAATGG
CGGTAAAAGATCGTGACCCATTGGCTCATTACCAATATGATGTCACGGTT
GTTACCGGATTTAGAAGGAATGCTGGGACCTCAGGCAATGTCAACATCCG
GTTAATTGGAGACTATGGTGAGTAATTTGGCCTTTTTATCATATTCTTTT
GTTGTTGTTGAAGAAAGGCTCTTTCACTTTCAGTTGTTTAAGAACATGTA
TGTTCAAGTTCGACCACTCTTCACTGATTCCTTATTATCATTTTTTGCTT
ATTCAAAACTGCAGGAGAAAGTGAACTTCATACACTATCGGATCCACTGA
CCAATAGGAAGGTCTTACAGCGAGGAAGTATTGACTCCTTCCTCATCACC
ACCCGTGACTGGTTGGGACAAATAAAAGAAATAGCGATACGGATAGACAA
CGTTGGGAAGAGCCAGTCTTGGTATGTGACTGATATCTTAGAAACAGAGC
ATTTCCATAATTCTTCAATTGTTCTGTGAAATCCATGGCAAGTATAAAGG
TTCTTGAGCAGTTATGTCCCTCACTACTAGTCCCGTGTGAAAAGTGCTGA
ACATGAAACACTGATGAATTAAAGACATTCAATTTTAGTAACATCATAGA
AAAGATGTTTTTGTTTTGTAACACTGAACAGGTATTTGAGCCGTGTAATG
GTACGGGACCTGCAGACTGACCAGCGGTGGCACTTTCTCAGTAACAGGTG
GTTAACGACGGATCAGGACAGACGGGAGGTAGTGTGTTGTATATTAGTTA
TTACACCGAAGATTAACGACAAAAACTAAATATGCAGATGGTAACGCTAT
TAAGATATGCAGATGGTAACGCTATGTTTGGTGCATTTGCACGTTCTTGC
CACCATGGGCTAAATACAGTAGTTTCACTTTTACATGAGAGACTGTTATT
ACTTAGTCTTCCTAGTGAACAATGGGAGAAACAAAACAACTAAAGCTATA
TGCCACCACTAAATCTATCGTTAACGTAACAATATGTCATGTTTATAGCA
TCCCATCTCATCAAAAGCTGTGTACTTTTCAGTTTGAGATCCATCTCCCC
GTGACAGATGAGAACGAGCTCCGACAGGCGCTGCCACTGTTCGTGGCTAG
AGCTCTCTTCGGACTACGGAACGATCACCTCTGGTTCTCCATCCTCACAC
GATCACCAAGGAGCAGGTATGACCATTTCATTTGAAACAACTTCCCAGAA
CGTAGGGCCTTATTGCATGTAGAAGCAAATCAATACAATAAGAAAATTTT
AGAACCTCTTTGGAAAGTACCCTGGGAGACCAGACCCAGTGACTCGGTGC
GATCGTTGGGTGATCGCGCCGAGTCACGGGGTTTGGTCTCCCAGGGTATT
TGGAAAGAAGAAAATGTGTCTACTATAAGCTGGGCAGACGTTAACCCTCC
TCTCAATGAATATATTCCAGCTTTACGAGAGTTCAGCGGATGACGTGCTG
TCTCATCACCCTCTTGTGTCAGATGGTCGCCGCCATCATTTTCCACGCAA
TATCTGGATATTCCAGCCTTGGTGAATTTCGGCTGGGATGGGAGCAGCTT
ATCGTTGGCGTGGAGTCGGG

Coding sequence (CDS) from alignment at Sc0000001:9629284..9630903+

>transcript:BL97085_cuf9 ID=transcript:BL97085_cuf9|Name=transcript:BL97085_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=3510bp|location=Sequence derived from alignment at Sc0000001:9629284..9630903+ (Branchiostoma lanceolatum)
GGGTTCCCACAATCAGAGTCTCTCTGCCACACTCAGGTTGAAACAATGGC
GGTAAAAGATCGTGACCCATTGGCTCATTACCAATATGATGTCACGGTTG
TTACCGGATTTAGAAGGAATGCTGGGACCTCAGGCAATGTCAACATCCGG
TTAATTGGAGACTATGGAGAAAGTGAACTTCATACACTATCGGATCCACT
GACCAATAGGAAGGTCTTACAGCGAGGAAGTATTGACTCCTTCCTCATCA
CCACCCGTGACTGGTTGGGACAAATAAAAGAAATAGCGATACGGATAGAC
AACGTTGGGAAGAGCCAGTCTTGGTATTTGAGCCGTGTAATGGTACGGGA
CCTGCAGACTGACCAGCGGTGGCACTTTCTCAGTAACAGGTGGTTAACGA
CGGATCAGGACAGACGGGAGTTTGAGATCCATCTCCCCGTGACAGATGAG
AACGAGCTCCGACAGGCGCTGCCACTGTTCGTGGCTAGAGCTCTCTTCGG
ACTACGGAACGATCACCTCTGGTTCTCCATCCTCACACGATCACCAAGGA
GCAGCTTTACGAGAGTTCAGCGGATGACGTGCTGTCTCATCACCCTCTTG
TGTCAGATGGTCGCCGCCATCATTTTCCACGCAATATCTGGATATTCCAG
CCTTGGTGAATTTCGGCTGGGATGGGAGCAGCTTATCGTTGGCGTGGAGT
CGGGGTTCCCACAATCAGAGTCTCTCTGCCACACTCAGGTTGAAACAATG
GCGGTAAAAGATCGTGACCCATTGGCTCATTACCAATATGATGTCACGGT
TGTTACCGGATTTAGAAGGAATGCTGGGACCTCAGGCAATGTCAACATCC
GGTTAATTGGAGACTATGGAGAAAGTGAACTTCATACACTATCGGATCCA
CTGACCAATAGGAAGGTCTTACAGCGAGGAAGTATTGACTCCTTCCTCAT
CACCACCCGTGACTGGTTGGGACAAATAAAAGAAATAGCGATACGGATAG
ACAACGTTGGGAAGAGCCAGTCTTGGTATTTGAGCCGTGTAATGGTACGG
GACCTGCAGACTGACCAGCGGTGGCACTTTCTCAGTAACAGGTGGTTAAC
GACGGATCAGGACAGACGGGAGTTTGAGATCCATCTCCCCGTGACAGATG
AGAACGAGCTCCGACAGGCGCTGCCACTGTTCGTGGCTAGAGCTCTCTTC
GGACTACGGAACGATCACCTCTGGTTCTCCATCCTCACACGATCACCAAG
GAGCAGCTTTACGAGAGTTCAGCGGATGACGTGCTGTCTCATCACCCTCT
TGTGTCAGATGGTCGCCGCCATCATTTTCCACGCAATATCTGGATATTCC
AGCCTTGGTGAATTTCGGCTGGGATGGGAGCAGCTTATCGTTGGCGTGGA
GTCGGGGTTCCCACAATCAGAGTCTCTCTGCCACACTCAGGTTGAAACAA
TGGCGGTAAAAGATCGTGACCCATTGGCTCATTACCAATATGATGTCACG
GTTGTTACCGGATTTAGAAGGAATGCTGGGACCTCAGGCAATGTCAACAT
CCGGTTAATTGGAGACTATGGAGAAAGTGAACTTCATACACTATCGGATC
CACTGACCAATAGGAAGGTCTTACAGCGAGGAAGTATTGACTCCTTCCTC
ATCACCACCCGTGACTGGTTGGGACAAATAAAAGAAATAGCGATACGGAT
AGACAACGTTGGGAAGAGCCAGTCTTGGTATTTGAGCCGTGTAATGGTAC
GGGACCTGCAGACTGACCAGCGGTGGCACTTTCTCAGTAACAGGTGGTTA
ACGACGGATCAGGACAGACGGGAGTTTGAGATCCATCTCCCCGTGACAGA
TGAGAACGAGCTCCGACAGGCGCTGCCACTGTTCGTGGCTAGAGCTCTCT
TCGGACTACGGAACGATCACCTCTGGTTCTCCATCCTCACACGATCACCA
AGGAGCAGCTTTACGAGAGTTCAGCGGATGACGTGCTGTCTCATCACCCT
CTTGTGTCAGATGGTCGCCGCCATCATTTTCCACGCAATATCTGGATATT
CCAGCCTTGGTGAATTTCGGCTGGGATGGGAGCAGCTTATCGTTGGCGTG
GAGTCGGGGTTCCCACAATCAGAGTCTCTCTGCCACACTCAGGTTGAAAC
AATGGCGGTAAAAGATCGTGACCCATTGGCTCATTACCAATATGATGTCA
CGGTTGTTACCGGATTTAGAAGGAATGCTGGGACCTCAGGCAATGTCAAC
ATCCGGTTAATTGGAGACTATGGAGAAAGTGAACTTCATACACTATCGGA
TCCACTGACCAATAGGAAGGTCTTACAGCGAGGAAGTATTGACTCCTTCC
TCATCACCACCCGTGACTGGTTGGGACAAATAAAAGAAATAGCGATACGG
ATAGACAACGTTGGGAAGAGCCAGTCTTGGTATTTGAGCCGTGTAATGGT
ACGGGACCTGCAGACTGACCAGCGGTGGCACTTTCTCAGTAACAGGTGGT
TAACGACGGATCAGGACAGACGGGAGTTTGAGATCCATCTCCCCGTGACA
GATGAGAACGAGCTCCGACAGGCGCTGCCACTGTTCGTGGCTAGAGCTCT
CTTCGGACTACGGAACGATCACCTCTGGTTCTCCATCCTCACACGATCAC
CAAGGAGCAGCTTTACGAGAGTTCAGCGGATGACGTGCTGTCTCATCACC
CTCTTGTGTCAGATGGTCGCCGCCATCATTTTCCACGCAATATCTGGATA
TTCCAGCCTTGGTGAATTTCGGCTGGGATGGGAGCAGCTTATCGTTGGCG
TGGAGTCGGGGTTCCCACAATCAGAGTCTCTCTGCCACACTCAGGTTGAA
ACAATGGCGGTAAAAGATCGTGACCCATTGGCTCATTACCAATATGATGT
CACGGTTGTTACCGGATTTAGAAGGAATGCTGGGACCTCAGGCAATGTCA
ACATCCGGTTAATTGGAGACTATGGAGAAAGTGAACTTCATACACTATCG
GATCCACTGACCAATAGGAAGGTCTTACAGCGAGGAAGTATTGACTCCTT
CCTCATCACCACCCGTGACTGGTTGGGACAAATAAAAGAAATAGCGATAC
GGATAGACAACGTTGGGAAGAGCCAGTCTTGGTATTTGAGCCGTGTAATG
GTACGGGACCTGCAGACTGACCAGCGGTGGCACTTTCTCAGTAACAGGTG
GTTAACGACGGATCAGGACAGACGGGAGTTTGAGATCCATCTCCCCGTGA
CAGATGAGAACGAGCTCCGACAGGCGCTGCCACTGTTCGTGGCTAGAGCT
CTCTTCGGACTACGGAACGATCACCTCTGGTTCTCCATCCTCACACGATC
ACCAAGGAGCAGCTTTACGAGAGTTCAGCGGATGACGTGCTGTCTCATCA
CCCTCTTGTGTCAGATGGTCGCCGCCATCATTTTCCACGCAATATCTGGA
TATTCCAGCCTTGGTGAATTTCGGCTGGGATGGGAGCAGCTTATCGTTGG
CGTGGAGTCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97085gene:BL97085Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97085_cuf9transcript:BL97085_cuf9-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97085_cuf9-E1BL97085_cuf9-E1-1564476830-31436Branchiostoma lanceolatumexon
BL97085_cuf9-E2BL97085_cuf9-E2-1564476830-31438Branchiostoma lanceolatumexon
BL97085_cuf9-E3BL97085_cuf9-E3-1564476830-31440Branchiostoma lanceolatumexon
BL97085_cuf9-E4BL97085_cuf9-E4-1564476830-31442Branchiostoma lanceolatumexon
BL97085_cuf9-E5BL97085_cuf9-E5-1564476830-31445Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:9629284..9630903 +
Properties
Property NameValue
Transcript idBL97085_cuf9
Biotypeprotein_coding