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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97083_cuf5 >transcript:BL97083_cuf5-protein ID=transcript:BL97083_cuf5-protein|Name=transcript:BL97083_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=294bp
KSWPVTNNTNPVLFIPGGTLDGGTTYVFRVTVSKPGRQVGGHAEKTVAMV EGTPPALEGISCVQNCQQYLNPSERLVLKAKCTDCTPESRLQYYWSLVNN PVNSKQWIDWDTDTLTGRQKTYLSIHKDTFKSGAGTETYTIRLDASDKRG ESTYALYSFITNVPPTLGTCTVVPDTGTVMETLFQVTCSGFSDVNLPLIY RFAAISGAATSTEAWKQGTMVYYGTDSTSSPLYLPVGDKDNDFVVTIAIR ATDSIGESTETTTTATVLEGEMKENVSTVITTTESTVDTLLKAG Run BLAST on NCBI mRNA from alignment at Sc0000001:9623630..9625523+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97083_cuf5 ID=transcript:BL97083_cuf5|Name=transcript:BL97083_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=1894bp|location=Sequence derived from alignment at Sc0000001:9623630..9625523+ (Branchiostoma lanceolatum) GGAAAAGCTGGCCAGTGACGAACAACACGAATCCTGTACTGTTCATCCCA
GGAGGGACTCTAGATGGTGAGAAAAAGTTCATAGATAGACAGGGAACAAC
TTATCAATGATGTCATTCTGATTTCATGATCCATGCGGTGCTGTTGGGAA
CGATCAAGATAGATAAATAGACATATGATATTATATGACTTCTTCTTATA
TATTTGTACAGTTAAACGTAGTAGCTTTAACTTTTCAACATGCTTCTGTT
TTAGGGGGAACAACGTACGTATTTCGGGTAACAGTTTCAAAGCCCGGTCG
ACAAGTCGGCGGCCACGCAGAAAAGACAGTCGCCATGGTGGAAGGCACTC
CCCCCGCCCTGGAAGGAATCTCGTAAGCACCATTAACGTAAAATCCATTG
AAACTTTTTATCCTGTACTTCAAAACATACAATCACCAGATTTTGTACCG
AACGTACGATACTTTTCACAAAGAACGTCCCAGTAATGAGCAAAAACATT
GATTTTGAAAGTTTAAAAACCAATTTTCAAACGTTTTATTATTTCAGGTG
TGTGCAGAATTGTCAACAGTATTTGAATCCATCGGAACGTTTAGTTCTAA
AGGCCAAGTGCACCGACTGCACTCCCGAAAGTCGTCTTCAGTACTACTGG
AGTTTAGTCAACAACCCTGTAAACAGTAAACAATGGATAGACTGGGACAC
AGACACACTCACGGGCAGACAGAAGACATACCTGTCTATACACAAAGACA
CGTTTAAGAGTGGAGCTGGTACAGAAACCTACACCATACGACTCGACGGT
AGGTGGTACGTCTGTAATAGAAATCCTCAAATACCTTATCGAAACCATAT
TTAACCCAATGAGTTGCTCAGCTTGAAGCTGCGATGTTCTGTGACATAAC
AACGAATCTTTCAAATAAGATTTTCCGTCCCTTTTCTTAATCATTGTACC
TGGCTTAGTCTTCTTGTTCCTGATTTTAAAGGCATAATAAACGTTAAGGC
ACATTTTATTCCTGCTTAACCTTTAACCTACTAGTATGATAGAAAATAAG
ATTACTGGTCCATTTTACTTTGTTTTGACGAGTGGTTTAATGCATCAATT
TTTATCTTTGCTGACTTAAACAGCGTCTGACAAAAGAGGAGAGTCTACAT
ACGCACTGTACAGCTTCATAACCAATGTACCACCAACCCTGGGAACGTGC
ACAGTCGTCCCGGACACTGGGACCGTGATGGAGACGTTGTTTCAGGTCAC
GTGTTCAGGATTTTCGGACGTGAACCTGCCGCTCATATACAGGTTTGCAG
CTATTTCTGGTGCTGCTACCTCAACAGAGGCCTGGAAACAAGGTAAAGCT
ACACCTAGATTATGACAACCTAAATATCTTACAACAATATGTAGTAGCTT
ATTCACCAGTACTTGATGTCCCTAAGTTTTTCTCAGACTGCCAAACTGTT
GCATGCCAGTTCAACACATACCAGCAAACACCTGTGCTAGGTACAATGGT
CTACTACGGTACGGACAGCACCTCTTCACCGTTGTATCTGCCTGTCGGGG
ACAAAGACAACGACTTTGTGGTCACCATTGCCATCCGTGCCACTGACTCT
ATTGGAGAAAGTACGGAGACCACGACAACCGCAACGGTGATGCGATAATC
TTTCACCATTTCTAGGATTGGCACGAGGACTATCTCATGTTCTAGAATTA
TGTTTTAAAAACACAGAATTGTAAAAGATCCTTCACATTTGTGACAAATA
ACATCAGTAAATCATCTGAAATAACTCAAGTGATGTCTGTTGCTGCATTC
TGTCGTTAGGTTTTAGAGGGAGAAATGAAGGAAAATGTATCAACCGTTAT
CACCACCACGGAATCAACAGTTGATACGTTACTGAAGGCGGGCA Coding sequence (CDS) from alignment at Sc0000001:9623630..9625523+ >transcript:BL97083_cuf5 ID=transcript:BL97083_cuf5|Name=transcript:BL97083_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=5292bp|location=Sequence derived from alignment at Sc0000001:9623630..9625523+ (Branchiostoma lanceolatum) AAAAGCTGGCCAGTGACGAACAACACGAATCCTGTACTGTTCATCCCAGG AGGGACTCTAGATGGGGGAACAACGTACGTATTTCGGGTAACAGTTTCAA AGCCCGGTCGACAAGTCGGCGGCCACGCAGAAAAGACAGTCGCCATGGTG GAAGGCACTCCCCCCGCCCTGGAAGGAATCTCGTGTGTGCAGAATTGTCA ACAGTATTTGAATCCATCGGAACGTTTAGTTCTAAAGGCCAAGTGCACCG ACTGCACTCCCGAAAGTCGTCTTCAGTACTACTGGAGTTTAGTCAACAAC CCTGTAAACAGTAAACAATGGATAGACTGGGACACAGACACACTCACGGG CAGACAGAAGACATACCTGTCTATACACAAAGACACGTTTAAGAGTGGAG CTGGTACAGAAACCTACACCATACGACTCGACGCGTCTGACAAAAGAGGA GAGTCTACATACGCACTGTACAGCTTCATAACCAATGTACCACCAACCCT GGGAACGTGCACAGTCGTCCCGGACACTGGGACCGTGATGGAGACGTTGT TTCAGGTCACGTGTTCAGGATTTTCGGACGTGAACCTGCCGCTCATATAC AGGTTTGCAGCTATTTCTGGTGCTGCTACCTCAACAGAGGCCTGGAAACA AGGTACAATGGTCTACTACGGTACGGACAGCACCTCTTCACCGTTGTATC TGCCTGTCGGGGACAAAGACAACGACTTTGTGGTCACCATTGCCATCCGT GCCACTGACTCTATTGGAGAAAGTACGGAGACCACGACAACCGCAACGGT TTTAGAGGGAGAAATGAAGGAAAATGTATCAACCGTTATCACCACCACGG AATCAACAGTTGATACGTTACTGAAGGCGGGCAAAAGCTGGCCAGTGACG AACAACACGAATCCTGTACTGTTCATCCCAGGAGGGACTCTAGATGGGGG AACAACGTACGTATTTCGGGTAACAGTTTCAAAGCCCGGTCGACAAGTCG GCGGCCACGCAGAAAAGACAGTCGCCATGGTGGAAGGCACTCCCCCCGCC CTGGAAGGAATCTCGTGTGTGCAGAATTGTCAACAGTATTTGAATCCATC GGAACGTTTAGTTCTAAAGGCCAAGTGCACCGACTGCACTCCCGAAAGTC GTCTTCAGTACTACTGGAGTTTAGTCAACAACCCTGTAAACAGTAAACAA TGGATAGACTGGGACACAGACACACTCACGGGCAGACAGAAGACATACCT GTCTATACACAAAGACACGTTTAAGAGTGGAGCTGGTACAGAAACCTACA CCATACGACTCGACGCGTCTGACAAAAGAGGAGAGTCTACATACGCACTG TACAGCTTCATAACCAATGTACCACCAACCCTGGGAACGTGCACAGTCGT CCCGGACACTGGGACCGTGATGGAGACGTTGTTTCAGGTCACGTGTTCAG GATTTTCGGACGTGAACCTGCCGCTCATATACAGGTTTGCAGCTATTTCT GGTGCTGCTACCTCAACAGAGGCCTGGAAACAAGGTACAATGGTCTACTA CGGTACGGACAGCACCTCTTCACCGTTGTATCTGCCTGTCGGGGACAAAG ACAACGACTTTGTGGTCACCATTGCCATCCGTGCCACTGACTCTATTGGA GAAAGTACGGAGACCACGACAACCGCAACGGTTTTAGAGGGAGAAATGAA GGAAAATGTATCAACCGTTATCACCACCACGGAATCAACAGTTGATACGT TACTGAAGGCGGGCAAAAGCTGGCCAGTGACGAACAACACGAATCCTGTA CTGTTCATCCCAGGAGGGACTCTAGATGGGGGAACAACGTACGTATTTCG GGTAACAGTTTCAAAGCCCGGTCGACAAGTCGGCGGCCACGCAGAAAAGA CAGTCGCCATGGTGGAAGGCACTCCCCCCGCCCTGGAAGGAATCTCGTGT GTGCAGAATTGTCAACAGTATTTGAATCCATCGGAACGTTTAGTTCTAAA GGCCAAGTGCACCGACTGCACTCCCGAAAGTCGTCTTCAGTACTACTGGA GTTTAGTCAACAACCCTGTAAACAGTAAACAATGGATAGACTGGGACACA GACACACTCACGGGCAGACAGAAGACATACCTGTCTATACACAAAGACAC GTTTAAGAGTGGAGCTGGTACAGAAACCTACACCATACGACTCGACGCGT CTGACAAAAGAGGAGAGTCTACATACGCACTGTACAGCTTCATAACCAAT GTACCACCAACCCTGGGAACGTGCACAGTCGTCCCGGACACTGGGACCGT GATGGAGACGTTGTTTCAGGTCACGTGTTCAGGATTTTCGGACGTGAACC TGCCGCTCATATACAGGTTTGCAGCTATTTCTGGTGCTGCTACCTCAACA GAGGCCTGGAAACAAGGTACAATGGTCTACTACGGTACGGACAGCACCTC TTCACCGTTGTATCTGCCTGTCGGGGACAAAGACAACGACTTTGTGGTCA CCATTGCCATCCGTGCCACTGACTCTATTGGAGAAAGTACGGAGACCACG ACAACCGCAACGGTTTTAGAGGGAGAAATGAAGGAAAATGTATCAACCGT TATCACCACCACGGAATCAACAGTTGATACGTTACTGAAGGCGGGCAAAA GCTGGCCAGTGACGAACAACACGAATCCTGTACTGTTCATCCCAGGAGGG ACTCTAGATGGGGGAACAACGTACGTATTTCGGGTAACAGTTTCAAAGCC CGGTCGACAAGTCGGCGGCCACGCAGAAAAGACAGTCGCCATGGTGGAAG GCACTCCCCCCGCCCTGGAAGGAATCTCGTGTGTGCAGAATTGTCAACAG TATTTGAATCCATCGGAACGTTTAGTTCTAAAGGCCAAGTGCACCGACTG CACTCCCGAAAGTCGTCTTCAGTACTACTGGAGTTTAGTCAACAACCCTG TAAACAGTAAACAATGGATAGACTGGGACACAGACACACTCACGGGCAGA CAGAAGACATACCTGTCTATACACAAAGACACGTTTAAGAGTGGAGCTGG TACAGAAACCTACACCATACGACTCGACGCGTCTGACAAAAGAGGAGAGT CTACATACGCACTGTACAGCTTCATAACCAATGTACCACCAACCCTGGGA ACGTGCACAGTCGTCCCGGACACTGGGACCGTGATGGAGACGTTGTTTCA GGTCACGTGTTCAGGATTTTCGGACGTGAACCTGCCGCTCATATACAGGT TTGCAGCTATTTCTGGTGCTGCTACCTCAACAGAGGCCTGGAAACAAGGT ACAATGGTCTACTACGGTACGGACAGCACCTCTTCACCGTTGTATCTGCC TGTCGGGGACAAAGACAACGACTTTGTGGTCACCATTGCCATCCGTGCCA CTGACTCTATTGGAGAAAGTACGGAGACCACGACAACCGCAACGGTTTTA GAGGGAGAAATGAAGGAAAATGTATCAACCGTTATCACCACCACGGAATC AACAGTTGATACGTTACTGAAGGCGGGCAAAAGCTGGCCAGTGACGAACA ACACGAATCCTGTACTGTTCATCCCAGGAGGGACTCTAGATGGGGGAACA ACGTACGTATTTCGGGTAACAGTTTCAAAGCCCGGTCGACAAGTCGGCGG CCACGCAGAAAAGACAGTCGCCATGGTGGAAGGCACTCCCCCCGCCCTGG AAGGAATCTCGTGTGTGCAGAATTGTCAACAGTATTTGAATCCATCGGAA CGTTTAGTTCTAAAGGCCAAGTGCACCGACTGCACTCCCGAAAGTCGTCT TCAGTACTACTGGAGTTTAGTCAACAACCCTGTAAACAGTAAACAATGGA TAGACTGGGACACAGACACACTCACGGGCAGACAGAAGACATACCTGTCT ATACACAAAGACACGTTTAAGAGTGGAGCTGGTACAGAAACCTACACCAT ACGACTCGACGCGTCTGACAAAAGAGGAGAGTCTACATACGCACTGTACA GCTTCATAACCAATGTACCACCAACCCTGGGAACGTGCACAGTCGTCCCG GACACTGGGACCGTGATGGAGACGTTGTTTCAGGTCACGTGTTCAGGATT TTCGGACGTGAACCTGCCGCTCATATACAGGTTTGCAGCTATTTCTGGTG CTGCTACCTCAACAGAGGCCTGGAAACAAGGTACAATGGTCTACTACGGT ACGGACAGCACCTCTTCACCGTTGTATCTGCCTGTCGGGGACAAAGACAA CGACTTTGTGGTCACCATTGCCATCCGTGCCACTGACTCTATTGGAGAAA GTACGGAGACCACGACAACCGCAACGGTTTTAGAGGGAGAAATGAAGGAA AATGTATCAACCGTTATCACCACCACGGAATCAACAGTTGATACGTTACT GAAGGCGGGCAAAAGCTGGCCAGTGACGAACAACACGAATCCTGTACTGT TCATCCCAGGAGGGACTCTAGATGGGGGAACAACGTACGTATTTCGGGTA ACAGTTTCAAAGCCCGGTCGACAAGTCGGCGGCCACGCAGAAAAGACAGT CGCCATGGTGGAAGGCACTCCCCCCGCCCTGGAAGGAATCTCGTGTGTGC AGAATTGTCAACAGTATTTGAATCCATCGGAACGTTTAGTTCTAAAGGCC AAGTGCACCGACTGCACTCCCGAAAGTCGTCTTCAGTACTACTGGAGTTT AGTCAACAACCCTGTAAACAGTAAACAATGGATAGACTGGGACACAGACA CACTCACGGGCAGACAGAAGACATACCTGTCTATACACAAAGACACGTTT AAGAGTGGAGCTGGTACAGAAACCTACACCATACGACTCGACGCGTCTGA CAAAAGAGGAGAGTCTACATACGCACTGTACAGCTTCATAACCAATGTAC CACCAACCCTGGGAACGTGCACAGTCGTCCCGGACACTGGGACCGTGATG GAGACGTTGTTTCAGGTCACGTGTTCAGGATTTTCGGACGTGAACCTGCC GCTCATATACAGGTTTGCAGCTATTTCTGGTGCTGCTACCTCAACAGAGG CCTGGAAACAAGGTACAATGGTCTACTACGGTACGGACAGCACCTCTTCA CCGTTGTATCTGCCTGTCGGGGACAAAGACAACGACTTTGTGGTCACCAT TGCCATCCGTGCCACTGACTCTATTGGAGAAAGTACGGAGACCACGACAA CCGCAACGGTTTTAGAGGGAGAAATGAAGGAAAATGTATCAACCGTTATC ACCACCACGGAATCAACAGTTGATACGTTACTGAAGGCGGGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000001 | genome | Sc0000001:9623630..9625523 + |
Properties
Property Name | Value |
Transcript id | BL97083_cuf5 |
Biotype | protein_coding |
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