|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97080_cuf0 >transcript:BL97080_cuf0-protein ID=transcript:BL97080_cuf0-protein|Name=transcript:BL97080_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=250bp
MTSPSKDAFQCVLLTALLTMLFHFAVSDVDECAEGSHNCAHLCTNTVGGF
TCSCRDGYTLHDNGWFCHGPKVDLYVEMQYPRVDVTSITNTETLCRPSLG
DLTLINGYHVGIKLDTGYGTNIDYLTYGAHYSSIGPSASRYGLRLFNDAG
NFRVNAFSCLTTRHGLTREVIGITILTSAYFHPESFTVTVNIKETATLSM
FEYNSAPGGHDGTTEWRKDGSVLSGTYTDCTMVIDNVQMSDEGLYECYYT Run BLAST on NCBI mRNA from alignment at Sc0000001:9611279..9615908+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97080_cuf0 ID=transcript:BL97080_cuf0|Name=transcript:BL97080_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4630bp|location=Sequence derived from alignment at Sc0000001:9611279..9615908+ (Branchiostoma lanceolatum)
GTCCTTCAATGTCTATCTTCCCACCTGCCACGTAGTCGAGCACCACAGCC
GGCAACGCCTCCAGTTACCATGGTGACAGTTAGCCGTCTGCTCCAGGTCT
TTGACCATATTTGTTTGGAACGGAAGAAGAAAAGGAAGTAAGATCACAAA
AAGAATATGTTGTCCTCCCGTGATGGTATAAACACAATGAGGCTCTAGAG
TACACTATTTCAAAAGATTGTGACGGAAGCATAGAACAGCGCGGGCGAAC
GCCGTTCGAAGTTCGGACGTTCGAACGTCGTACCATACAACCTTGCGTAA
CAACAAACAATGGTAGAACGAGACTGTTGTGACGTTCTTGAAGGACACTA
GAGTCATCTACTACACATAGAAACCACCGGTATTCATTCCCTCCATGCAA
GATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTC
TTCTTACGATGCTGTTCCACTTCGCAGTCTCAGGTAAATGATTCAAACAT
CAAGGTCAAATTTGGAAACTTCAGGAGAGAATTTTAAGTTTCGTTGATAA
CTTAGGGAAATTTAGGAGAGAGGGTCTTTCATGTTAATATGCTACGGTCT
TTGTTGATTTTCTATGGCTTTCTTCCATGCATGTGATTCAATAAAATTTT
GTGGACGTTGTTGTTGTTGCTATATTGTTTTATACGGTGTGGAATGTGTT
GTGACATATACCTGGGTTCGGCTTGTAATGTTACAACAGACGTAGATGAG
TGTGCGGAGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGG
CGGTTTTACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCT
GGTTCTGTCACGGTAAGTCAGGACTTCCACTTATCATACATAGATACAGA
CTCTAGTGGGGTCGTAACGTAATAAAGACTACAGAAGACTAGCGAAAGCT
CAACACGATAAACAGTTATGATGTCAAACCATGTAAAATAGCGCTGTTCC
TGCTCGCTAGTAACGTAAGAAGACCATTACGCTGTATATCAAGTGCATCG
ACTGCTTATTACTACAGCGGGTATCTCACTGGCATGGACTGCGGCACGCT
GGCGTCCCTGCTGCGTTCTAAATTGGATTTGTGTTAAACTTTACTCTATA
ATGGAACCAGCGGAAATGACATGATTTTAAACGAAATACTGAAACGGTAT
TGAAAACGCCTCTTCTTAAATTATTCAACACATGTTCACAACACGGATAC
TTTCATGAGGAATGGTCCCTTAGTCACATTGTCATAATTGGAATATCATG
CCAAACGTACAAGTATGACTAAAAAGATAATAAAACACACAAGGTAAAAA
GATTGTGCTTTTATCTGTAAAATTCGTTGAGTGTTCTGTCAAACCACTGG
TTCGCAGAGTTTGCAAATGTGCCGCGGGTCCGGTGAAATACCTGCTTTCG
ATACCCACTTACGGTTTGAATATCTGTATCACTTTATTAGACCGTGCATA
TCTATTTCTAGTAACATGCTCTTCATCTGTGGCGCTTTGTCTTGTCCTTC
ATGTATGTTACGGTTTTCTTCTTTACCTAGGTCCGAAAGTGGACCTGTAT
GTGGAGATGCAGTATCCCAGAGTTGACGTGACAAGTATAACTAACACTGA
GACCCTTTGTCGGCCTTCCCTGGGGGACCTGACTTTGATCAATGGCTACC
ATGTCGGCATCAAGTTGGACACAGGTCAGCACAAATTGAAAACAACCGTT
TACGTGATTTATCTTAGTACGGTCGTTTTACATTTTGTCGTAAATATCCT
TGATGTTGGAGCTAAGAATCGAGCGTTCGGGTGTTGTCGGTCACCCGACT
TGCACACTACTGGTAAGTGTTACAGTTTTTGCAGGTTATATACTGTGATA
TACTGAACTTTGTGGAAAAGAGCTAGTGCGTATTCCTTGACGCCTTGGGC
CAAAGTTTTCTTGCCACCACGAATGTTTATTCCCTTACTAAGGCCCACCT
TACACTTGTTTCTTTTTTTAAATGCCGTAAAAAATATCTTAGTCTACTTC
TCTAGTAGACGATTCGAGTATGCTTTACACTCACTGCCAGGAAGCCTAGC
AGGACACCCGCTGTGTCCCGACTCCCGATTGCCACGAAACTTGTGTCATG
ACCTTATCTGACCTATTGTTGACTTTCAACAAATCGCGGACGGGAATTTT
AGCATGGTTTATATTTGTGAAAAAGTAAGGATTTTTTTCTGATACGAGGC
ACCCAGGAAAGGGGCTTGACAGCTCAGGCTTACAGTAGAAACTTGTAAAT
GATCTCAGGTGACACCAAACGGAACATGACGTTCGGTTCAAATAACGTGT
TCGATCTGACGTAAGTCGAACCGAACGAGTGTTCCATTTGGGGTCATCTG
CGGTCATTCTCTACTTTCCTTTCCATTGTAAAACCGAGCTGTCGGGCCCT
TTTCCTGGGGGCCTCGCATTAGAAAAAAAAATATCAAATATAAAGTGTGC
TGAAATTCCTGCCCGCAACCTGTAACAGGTCACAATAGGTCACTACAGTT
TCATGACAACCAGGGAACGGCAGGCATCCTGTCAGTAAGTGTAAAGCGGA
CGCGAATCTGCAGTCTACTATAGAAAAGTAGACTACGATGTGTAGTACTA
CATGTACAGTTTCAAAGAAGACGTGTGAATTCGGCCTAAGGGAAGTAGAG
CACGCTGTCTACTACGACAATTTCGAAGTGTACCTTGGGCTTTACGCCCG
AACCAGCTCAAAGTCTCGCATAATCCCCGTTGAAGTGTAAGGCCCAATTT
ACACTTGTCCTTTTAACTGTAGTACTACACATGATAGTCTACTACTGTAG
TAGACTACAGCTTTTTTCTGTGTGTAAAAAGAAAACTACTGCAGAAGTCT
ACTACAACCTCGGGGGTAGTAGTACTACACTTCGGCGGAGGTTCTGCGAG
ACTTCGAACTGGGTGTAAAGCGAAACTGTAGTACAGTGGTAGTAGACTTC
ACTTCGAAGCCAACAACCATGTTCGATCTGACGTGATTCGAACTGATCGC
GTGTTCCATTTCGGGTCATCTGCGGTCATTCTCTAGTTTTCTCAGTAAAA
CCGAGCTGTCAGGCCCTTTTCCTTAGTATTTTGCATCAGATAAAACCCCT
ACCTTTTCACAAATAAGAAACATGCTGAAATTCCCTCCCGCGATTTTTCA
AAGGTCACAATAGGTCACTACAGTTTCGTGACAATCAGGAACAGTGGGGT
GTCCTGCTAGGCTTCCTGTGTTGAGTGTAAAATGGACATGAATCTGAAGT
CTTCTACAGTAGTAGACTACCATGTGTAGTACTACAGTTTTATTGAACAA
GTGTAAATTGGGCCTAATACTACAGAGGCTGTAGTAGACTTCTGTAGTAG
ACTTAGCTTCATTTCTCTTTACACACAGAAAAAAGTTGTAGTCTACGAGA
GAAGTAGACTAAGATGTGTAGAAATACAGTTAGAGGCACAAGTATAAAGT
GGGCCTAAGCTTGACAAGGTCATCGAGGTCTAATCCCAAATATTTATTTC
AGGATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCA
GTATCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCC
GGGAACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTT
AACACGTGAAGTCATCGGCATCACCATTCTAACATCAGGTAAGGCGCCCA
TATAGATAAGGTCTATCTGCAAGTAATTCATGGACAGTCGCGGGCGTGTC
GTAAAGCTCTCTTGTGGTGGTCATAGATTCTTGTTGATTGTAGGTTCTGT
CATAACCTCACTGTAAATCTTACGACTAACGACGAATGTGACATTCGCAA
TTGAAAGATAATGATCTCTCCCATCGCAGCTTACTTCCATCCAGAGTCGT
TCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATGTTTGAG
TACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAGGAAGGA
CGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCATTGATA
ATGTTCAGGTTAGCAGTGGTTAGACCAATGATTCCACAACAATGCAAATT
GTCGCACATGAAAAAAATGCAACTTGAATTTCACTTTTGTAGCATTGACC
ATCCTTCTAGCCTGAATGCCAGACCCCCACGTGCACTCTGTAAAATATCT
ATCGTATGGTCACCATAAGATAAATATTTTAGAGAGTAGGGGTCTGGCAT
CCAGACTGCAATCCTTCCCTATTGTACACAGGCATGAATAACACATCCTT
TAATGATATAACATCAAAGGCAATTGATCTACATGTATGCACTCTCTTAC
TGTTTTACTTGATGCTGACTGTCATTAAGTCTGCACGGAACCTTGTACAA
GATCAGATAGCCATTCTTGCCTTGTTGAATCAATCAATGTAACGTTAACG
TTGTTCAAACTAAAGAATATAGGACTCCTGCGGATTCCCGAGAATCTTAA
TCTTGTTCTGCATGTGTCATATTTCAAAAACTCTTTTTCAAGATGTCGGA
CGAAGGTCTGTACGAGTGTTACTACACGGG Coding sequence (CDS) from alignment at Sc0000001:9611279..9615908+ >transcript:BL97080_cuf0 ID=transcript:BL97080_cuf0|Name=transcript:BL97080_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4500bp|location=Sequence derived from alignment at Sc0000001:9611279..9615908+ (Branchiostoma lanceolatum)
ATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTCT
TCTTACGATGCTGTTCCACTTCGCAGTCTCAGACGTAGATGAGTGTGCGG
AGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGGCGGTTTT
ACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCTGGTTCTG
TCACGGTCCGAAAGTGGACCTGTATGTGGAGATGCAGTATCCCAGAGTTG
ACGTGACAAGTATAACTAACACTGAGACCCTTTGTCGGCCTTCCCTGGGG
GACCTGACTTTGATCAATGGCTACCATGTCGGCATCAAGTTGGACACAGG
ATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCAGTA
TCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCCGGG
AACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTTAAC
ACGTGAAGTCATCGGCATCACCATTCTAACATCAGCTTACTTCCATCCAG
AGTCGTTCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATG
TTTGAGTACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAG
GAAGGACGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCA
TTGATAATGTTCAGATGTCGGACGAAGGTCTGTACGAGTGTTACTACACG
ATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTCT
TCTTACGATGCTGTTCCACTTCGCAGTCTCAGACGTAGATGAGTGTGCGG
AGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGGCGGTTTT
ACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCTGGTTCTG
TCACGGTCCGAAAGTGGACCTGTATGTGGAGATGCAGTATCCCAGAGTTG
ACGTGACAAGTATAACTAACACTGAGACCCTTTGTCGGCCTTCCCTGGGG
GACCTGACTTTGATCAATGGCTACCATGTCGGCATCAAGTTGGACACAGG
ATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCAGTA
TCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCCGGG
AACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTTAAC
ACGTGAAGTCATCGGCATCACCATTCTAACATCAGCTTACTTCCATCCAG
AGTCGTTCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATG
TTTGAGTACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAG
GAAGGACGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCA
TTGATAATGTTCAGATGTCGGACGAAGGTCTGTACGAGTGTTACTACACG
ATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTCT
TCTTACGATGCTGTTCCACTTCGCAGTCTCAGACGTAGATGAGTGTGCGG
AGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGGCGGTTTT
ACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCTGGTTCTG
TCACGGTCCGAAAGTGGACCTGTATGTGGAGATGCAGTATCCCAGAGTTG
ACGTGACAAGTATAACTAACACTGAGACCCTTTGTCGGCCTTCCCTGGGG
GACCTGACTTTGATCAATGGCTACCATGTCGGCATCAAGTTGGACACAGG
ATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCAGTA
TCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCCGGG
AACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTTAAC
ACGTGAAGTCATCGGCATCACCATTCTAACATCAGCTTACTTCCATCCAG
AGTCGTTCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATG
TTTGAGTACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAG
GAAGGACGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCA
TTGATAATGTTCAGATGTCGGACGAAGGTCTGTACGAGTGTTACTACACG
ATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTCT
TCTTACGATGCTGTTCCACTTCGCAGTCTCAGACGTAGATGAGTGTGCGG
AGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGGCGGTTTT
ACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCTGGTTCTG
TCACGGTCCGAAAGTGGACCTGTATGTGGAGATGCAGTATCCCAGAGTTG
ACGTGACAAGTATAACTAACACTGAGACCCTTTGTCGGCCTTCCCTGGGG
GACCTGACTTTGATCAATGGCTACCATGTCGGCATCAAGTTGGACACAGG
ATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCAGTA
TCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCCGGG
AACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTTAAC
ACGTGAAGTCATCGGCATCACCATTCTAACATCAGCTTACTTCCATCCAG
AGTCGTTCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATG
TTTGAGTACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAG
GAAGGACGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCA
TTGATAATGTTCAGATGTCGGACGAAGGTCTGTACGAGTGTTACTACACG
ATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTCT
TCTTACGATGCTGTTCCACTTCGCAGTCTCAGACGTAGATGAGTGTGCGG
AGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGGCGGTTTT
ACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCTGGTTCTG
TCACGGTCCGAAAGTGGACCTGTATGTGGAGATGCAGTATCCCAGAGTTG
ACGTGACAAGTATAACTAACACTGAGACCCTTTGTCGGCCTTCCCTGGGG
GACCTGACTTTGATCAATGGCTACCATGTCGGCATCAAGTTGGACACAGG
ATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCAGTA
TCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCCGGG
AACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTTAAC
ACGTGAAGTCATCGGCATCACCATTCTAACATCAGCTTACTTCCATCCAG
AGTCGTTCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATG
TTTGAGTACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAG
GAAGGACGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCA
TTGATAATGTTCAGATGTCGGACGAAGGTCTGTACGAGTGTTACTACACG
ATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTCT
TCTTACGATGCTGTTCCACTTCGCAGTCTCAGACGTAGATGAGTGTGCGG
AGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGGCGGTTTT
ACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCTGGTTCTG
TCACGGTCCGAAAGTGGACCTGTATGTGGAGATGCAGTATCCCAGAGTTG
ACGTGACAAGTATAACTAACACTGAGACCCTTTGTCGGCCTTCCCTGGGG
GACCTGACTTTGATCAATGGCTACCATGTCGGCATCAAGTTGGACACAGG
ATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCAGTA
TCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCCGGG
AACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTTAAC
ACGTGAAGTCATCGGCATCACCATTCTAACATCAGCTTACTTCCATCCAG
AGTCGTTCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATG
TTTGAGTACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAG
GAAGGACGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCA
TTGATAATGTTCAGATGTCGGACGAAGGTCTGTACGAGTGTTACTACACG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000001 | genome | Sc0000001:9611279..9615908 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97080_cuf0 |
| Biotype | protein_coding |
|
