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transcript:BL97080_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97080_cuf0
Unique Nametranscript:BL97080_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97080_cuf0

>transcript:BL97080_cuf0-protein ID=transcript:BL97080_cuf0-protein|Name=transcript:BL97080_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=250bp
MTSPSKDAFQCVLLTALLTMLFHFAVSDVDECAEGSHNCAHLCTNTVGGF
TCSCRDGYTLHDNGWFCHGPKVDLYVEMQYPRVDVTSITNTETLCRPSLG
DLTLINGYHVGIKLDTGYGTNIDYLTYGAHYSSIGPSASRYGLRLFNDAG
NFRVNAFSCLTTRHGLTREVIGITILTSAYFHPESFTVTVNIKETATLSM
FEYNSAPGGHDGTTEWRKDGSVLSGTYTDCTMVIDNVQMSDEGLYECYYT
Run BLAST on NCBI

mRNA from alignment at Sc0000001:9611279..9615908+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97080_cuf0 ID=transcript:BL97080_cuf0|Name=transcript:BL97080_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4630bp|location=Sequence derived from alignment at Sc0000001:9611279..9615908+ (Branchiostoma lanceolatum)
GTCCTTCAATGTCTATCTTCCCACCTGCCACGTAGTCGAGCACCACAGCC GGCAACGCCTCCAGTTACCATGGTGACAGTTAGCCGTCTGCTCCAGGTCT TTGACCATATTTGTTTGGAACGGAAGAAGAAAAGGAAGTAAGATCACAAA AAGAATATGTTGTCCTCCCGTGATGGTATAAACACAATGAGGCTCTAGAG TACACTATTTCAAAAGATTGTGACGGAAGCATAGAACAGCGCGGGCGAAC GCCGTTCGAAGTTCGGACGTTCGAACGTCGTACCATACAACCTTGCGTAA CAACAAACAATGGTAGAACGAGACTGTTGTGACGTTCTTGAAGGACACTA GAGTCATCTACTACACATAGAAACCACCGGTATTCATTCCCTCCATGCAA GATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTC TTCTTACGATGCTGTTCCACTTCGCAGTCTCAGGTAAATGATTCAAACAT CAAGGTCAAATTTGGAAACTTCAGGAGAGAATTTTAAGTTTCGTTGATAA CTTAGGGAAATTTAGGAGAGAGGGTCTTTCATGTTAATATGCTACGGTCT TTGTTGATTTTCTATGGCTTTCTTCCATGCATGTGATTCAATAAAATTTT GTGGACGTTGTTGTTGTTGCTATATTGTTTTATACGGTGTGGAATGTGTT GTGACATATACCTGGGTTCGGCTTGTAATGTTACAACAGACGTAGATGAG TGTGCGGAGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGG CGGTTTTACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCT GGTTCTGTCACGGTAAGTCAGGACTTCCACTTATCATACATAGATACAGA CTCTAGTGGGGTCGTAACGTAATAAAGACTACAGAAGACTAGCGAAAGCT CAACACGATAAACAGTTATGATGTCAAACCATGTAAAATAGCGCTGTTCC TGCTCGCTAGTAACGTAAGAAGACCATTACGCTGTATATCAAGTGCATCG ACTGCTTATTACTACAGCGGGTATCTCACTGGCATGGACTGCGGCACGCT GGCGTCCCTGCTGCGTTCTAAATTGGATTTGTGTTAAACTTTACTCTATA ATGGAACCAGCGGAAATGACATGATTTTAAACGAAATACTGAAACGGTAT TGAAAACGCCTCTTCTTAAATTATTCAACACATGTTCACAACACGGATAC TTTCATGAGGAATGGTCCCTTAGTCACATTGTCATAATTGGAATATCATG CCAAACGTACAAGTATGACTAAAAAGATAATAAAACACACAAGGTAAAAA GATTGTGCTTTTATCTGTAAAATTCGTTGAGTGTTCTGTCAAACCACTGG TTCGCAGAGTTTGCAAATGTGCCGCGGGTCCGGTGAAATACCTGCTTTCG ATACCCACTTACGGTTTGAATATCTGTATCACTTTATTAGACCGTGCATA TCTATTTCTAGTAACATGCTCTTCATCTGTGGCGCTTTGTCTTGTCCTTC ATGTATGTTACGGTTTTCTTCTTTACCTAGGTCCGAAAGTGGACCTGTAT GTGGAGATGCAGTATCCCAGAGTTGACGTGACAAGTATAACTAACACTGA GACCCTTTGTCGGCCTTCCCTGGGGGACCTGACTTTGATCAATGGCTACC ATGTCGGCATCAAGTTGGACACAGGTCAGCACAAATTGAAAACAACCGTT TACGTGATTTATCTTAGTACGGTCGTTTTACATTTTGTCGTAAATATCCT TGATGTTGGAGCTAAGAATCGAGCGTTCGGGTGTTGTCGGTCACCCGACT TGCACACTACTGGTAAGTGTTACAGTTTTTGCAGGTTATATACTGTGATA TACTGAACTTTGTGGAAAAGAGCTAGTGCGTATTCCTTGACGCCTTGGGC CAAAGTTTTCTTGCCACCACGAATGTTTATTCCCTTACTAAGGCCCACCT TACACTTGTTTCTTTTTTTAAATGCCGTAAAAAATATCTTAGTCTACTTC TCTAGTAGACGATTCGAGTATGCTTTACACTCACTGCCAGGAAGCCTAGC AGGACACCCGCTGTGTCCCGACTCCCGATTGCCACGAAACTTGTGTCATG ACCTTATCTGACCTATTGTTGACTTTCAACAAATCGCGGACGGGAATTTT AGCATGGTTTATATTTGTGAAAAAGTAAGGATTTTTTTCTGATACGAGGC ACCCAGGAAAGGGGCTTGACAGCTCAGGCTTACAGTAGAAACTTGTAAAT GATCTCAGGTGACACCAAACGGAACATGACGTTCGGTTCAAATAACGTGT TCGATCTGACGTAAGTCGAACCGAACGAGTGTTCCATTTGGGGTCATCTG CGGTCATTCTCTACTTTCCTTTCCATTGTAAAACCGAGCTGTCGGGCCCT TTTCCTGGGGGCCTCGCATTAGAAAAAAAAATATCAAATATAAAGTGTGC TGAAATTCCTGCCCGCAACCTGTAACAGGTCACAATAGGTCACTACAGTT TCATGACAACCAGGGAACGGCAGGCATCCTGTCAGTAAGTGTAAAGCGGA CGCGAATCTGCAGTCTACTATAGAAAAGTAGACTACGATGTGTAGTACTA CATGTACAGTTTCAAAGAAGACGTGTGAATTCGGCCTAAGGGAAGTAGAG CACGCTGTCTACTACGACAATTTCGAAGTGTACCTTGGGCTTTACGCCCG AACCAGCTCAAAGTCTCGCATAATCCCCGTTGAAGTGTAAGGCCCAATTT ACACTTGTCCTTTTAACTGTAGTACTACACATGATAGTCTACTACTGTAG TAGACTACAGCTTTTTTCTGTGTGTAAAAAGAAAACTACTGCAGAAGTCT ACTACAACCTCGGGGGTAGTAGTACTACACTTCGGCGGAGGTTCTGCGAG ACTTCGAACTGGGTGTAAAGCGAAACTGTAGTACAGTGGTAGTAGACTTC ACTTCGAAGCCAACAACCATGTTCGATCTGACGTGATTCGAACTGATCGC GTGTTCCATTTCGGGTCATCTGCGGTCATTCTCTAGTTTTCTCAGTAAAA CCGAGCTGTCAGGCCCTTTTCCTTAGTATTTTGCATCAGATAAAACCCCT ACCTTTTCACAAATAAGAAACATGCTGAAATTCCCTCCCGCGATTTTTCA AAGGTCACAATAGGTCACTACAGTTTCGTGACAATCAGGAACAGTGGGGT GTCCTGCTAGGCTTCCTGTGTTGAGTGTAAAATGGACATGAATCTGAAGT CTTCTACAGTAGTAGACTACCATGTGTAGTACTACAGTTTTATTGAACAA GTGTAAATTGGGCCTAATACTACAGAGGCTGTAGTAGACTTCTGTAGTAG ACTTAGCTTCATTTCTCTTTACACACAGAAAAAAGTTGTAGTCTACGAGA GAAGTAGACTAAGATGTGTAGAAATACAGTTAGAGGCACAAGTATAAAGT GGGCCTAAGCTTGACAAGGTCATCGAGGTCTAATCCCAAATATTTATTTC AGGATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCA GTATCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCC GGGAACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTT AACACGTGAAGTCATCGGCATCACCATTCTAACATCAGGTAAGGCGCCCA TATAGATAAGGTCTATCTGCAAGTAATTCATGGACAGTCGCGGGCGTGTC GTAAAGCTCTCTTGTGGTGGTCATAGATTCTTGTTGATTGTAGGTTCTGT CATAACCTCACTGTAAATCTTACGACTAACGACGAATGTGACATTCGCAA TTGAAAGATAATGATCTCTCCCATCGCAGCTTACTTCCATCCAGAGTCGT TCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATGTTTGAG TACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAGGAAGGA CGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCATTGATA ATGTTCAGGTTAGCAGTGGTTAGACCAATGATTCCACAACAATGCAAATT GTCGCACATGAAAAAAATGCAACTTGAATTTCACTTTTGTAGCATTGACC ATCCTTCTAGCCTGAATGCCAGACCCCCACGTGCACTCTGTAAAATATCT ATCGTATGGTCACCATAAGATAAATATTTTAGAGAGTAGGGGTCTGGCAT CCAGACTGCAATCCTTCCCTATTGTACACAGGCATGAATAACACATCCTT TAATGATATAACATCAAAGGCAATTGATCTACATGTATGCACTCTCTTAC TGTTTTACTTGATGCTGACTGTCATTAAGTCTGCACGGAACCTTGTACAA GATCAGATAGCCATTCTTGCCTTGTTGAATCAATCAATGTAACGTTAACG TTGTTCAAACTAAAGAATATAGGACTCCTGCGGATTCCCGAGAATCTTAA TCTTGTTCTGCATGTGTCATATTTCAAAAACTCTTTTTCAAGATGTCGGA CGAAGGTCTGTACGAGTGTTACTACACGGG

Coding sequence (CDS) from alignment at Sc0000001:9611279..9615908+

>transcript:BL97080_cuf0 ID=transcript:BL97080_cuf0|Name=transcript:BL97080_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4500bp|location=Sequence derived from alignment at Sc0000001:9611279..9615908+ (Branchiostoma lanceolatum)
ATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTCT
TCTTACGATGCTGTTCCACTTCGCAGTCTCAGACGTAGATGAGTGTGCGG
AGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGGCGGTTTT
ACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCTGGTTCTG
TCACGGTCCGAAAGTGGACCTGTATGTGGAGATGCAGTATCCCAGAGTTG
ACGTGACAAGTATAACTAACACTGAGACCCTTTGTCGGCCTTCCCTGGGG
GACCTGACTTTGATCAATGGCTACCATGTCGGCATCAAGTTGGACACAGG
ATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCAGTA
TCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCCGGG
AACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTTAAC
ACGTGAAGTCATCGGCATCACCATTCTAACATCAGCTTACTTCCATCCAG
AGTCGTTCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATG
TTTGAGTACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAG
GAAGGACGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCA
TTGATAATGTTCAGATGTCGGACGAAGGTCTGTACGAGTGTTACTACACG
ATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTCT
TCTTACGATGCTGTTCCACTTCGCAGTCTCAGACGTAGATGAGTGTGCGG
AGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGGCGGTTTT
ACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCTGGTTCTG
TCACGGTCCGAAAGTGGACCTGTATGTGGAGATGCAGTATCCCAGAGTTG
ACGTGACAAGTATAACTAACACTGAGACCCTTTGTCGGCCTTCCCTGGGG
GACCTGACTTTGATCAATGGCTACCATGTCGGCATCAAGTTGGACACAGG
ATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCAGTA
TCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCCGGG
AACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTTAAC
ACGTGAAGTCATCGGCATCACCATTCTAACATCAGCTTACTTCCATCCAG
AGTCGTTCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATG
TTTGAGTACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAG
GAAGGACGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCA
TTGATAATGTTCAGATGTCGGACGAAGGTCTGTACGAGTGTTACTACACG
ATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTCT
TCTTACGATGCTGTTCCACTTCGCAGTCTCAGACGTAGATGAGTGTGCGG
AGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGGCGGTTTT
ACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCTGGTTCTG
TCACGGTCCGAAAGTGGACCTGTATGTGGAGATGCAGTATCCCAGAGTTG
ACGTGACAAGTATAACTAACACTGAGACCCTTTGTCGGCCTTCCCTGGGG
GACCTGACTTTGATCAATGGCTACCATGTCGGCATCAAGTTGGACACAGG
ATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCAGTA
TCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCCGGG
AACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTTAAC
ACGTGAAGTCATCGGCATCACCATTCTAACATCAGCTTACTTCCATCCAG
AGTCGTTCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATG
TTTGAGTACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAG
GAAGGACGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCA
TTGATAATGTTCAGATGTCGGACGAAGGTCTGTACGAGTGTTACTACACG
ATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTCT
TCTTACGATGCTGTTCCACTTCGCAGTCTCAGACGTAGATGAGTGTGCGG
AGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGGCGGTTTT
ACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCTGGTTCTG
TCACGGTCCGAAAGTGGACCTGTATGTGGAGATGCAGTATCCCAGAGTTG
ACGTGACAAGTATAACTAACACTGAGACCCTTTGTCGGCCTTCCCTGGGG
GACCTGACTTTGATCAATGGCTACCATGTCGGCATCAAGTTGGACACAGG
ATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCAGTA
TCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCCGGG
AACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTTAAC
ACGTGAAGTCATCGGCATCACCATTCTAACATCAGCTTACTTCCATCCAG
AGTCGTTCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATG
TTTGAGTACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAG
GAAGGACGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCA
TTGATAATGTTCAGATGTCGGACGAAGGTCTGTACGAGTGTTACTACACG
ATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTCT
TCTTACGATGCTGTTCCACTTCGCAGTCTCAGACGTAGATGAGTGTGCGG
AGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGGCGGTTTT
ACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCTGGTTCTG
TCACGGTCCGAAAGTGGACCTGTATGTGGAGATGCAGTATCCCAGAGTTG
ACGTGACAAGTATAACTAACACTGAGACCCTTTGTCGGCCTTCCCTGGGG
GACCTGACTTTGATCAATGGCTACCATGTCGGCATCAAGTTGGACACAGG
ATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCAGTA
TCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCCGGG
AACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTTAAC
ACGTGAAGTCATCGGCATCACCATTCTAACATCAGCTTACTTCCATCCAG
AGTCGTTCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATG
TTTGAGTACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAG
GAAGGACGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCA
TTGATAATGTTCAGATGTCGGACGAAGGTCTGTACGAGTGTTACTACACG
ATGACTTCTCCATCTAAAGATGCGTTTCAATGTGTCCTCCTGACGGCTCT
TCTTACGATGCTGTTCCACTTCGCAGTCTCAGACGTAGATGAGTGTGCGG
AGGGGAGCCACAACTGCGCCCATCTCTGCACGAACACAGTGGGCGGTTTT
ACCTGCTCCTGCAGGGATGGGTACACACTGCACGATAACGGCTGGTTCTG
TCACGGTCCGAAAGTGGACCTGTATGTGGAGATGCAGTATCCCAGAGTTG
ACGTGACAAGTATAACTAACACTGAGACCCTTTGTCGGCCTTCCCTGGGG
GACCTGACTTTGATCAATGGCTACCATGTCGGCATCAAGTTGGACACAGG
ATACGGCACCAACATTGACTACCTTACGTACGGAGCTCACTACAGCAGTA
TCGGTCCCTCGGCCAGCAGGTACGGGCTCAGGCTGTTTAATGACGCCGGG
AACTTCCGGGTCAATGCCTTCTCCTGCCTGACGACACGTCATGGCTTAAC
ACGTGAAGTCATCGGCATCACCATTCTAACATCAGCTTACTTCCATCCAG
AGTCGTTCACTGTCACGGTAAACATCAAAGAAACCGCGACGCTTTCCATG
TTTGAGTACAACTCAGCCCCTGGCGGCCACGACGGTACTACAGAGTGGAG
GAAGGACGGTTCTGTGCTATCTGGGACCTACACGGATTGTACCATGGTCA
TTGATAATGTTCAGATGTCGGACGAAGGTCTGTACGAGTGTTACTACACG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97080gene:BL97080Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97080_cuf0transcript:BL97080_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97080_cuf0-E1BL97080_cuf0-E1-1564476830-31370Branchiostoma lanceolatumexon
BL97080_cuf0-E2BL97080_cuf0-E2-1564476830-31372Branchiostoma lanceolatumexon
BL97080_cuf0-E3BL97080_cuf0-E3-1564476830-31374Branchiostoma lanceolatumexon
BL97080_cuf0-E4BL97080_cuf0-E4-1564476830-31376Branchiostoma lanceolatumexon
BL97080_cuf0-E5BL97080_cuf0-E5-1564476830-31378Branchiostoma lanceolatumexon
BL97080_cuf0-E6BL97080_cuf0-E6-1564476830-31381Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:9611279..9615908 +
Properties
Property NameValue
Transcript idBL97080_cuf0
Biotypeprotein_coding