transcript:BL97078_cuf7 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97078_cuf7
Unique Nametranscript:BL97078_cuf7
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97078_cuf7

>transcript:BL97078_cuf7-protein ID=transcript:BL97078_cuf7-protein|Name=transcript:BL97078_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=193bp
MMWETGSKTIVMVTNLKEKNKQKCTQYWPDSGKQTYGDIDVTLVDTIPMV
DLATRIFLVTKDGVHGRRQVTQFHFLGWPDYGLPRSPMGLLKFHRTVVTK
TTSNDTPIVVHCSAGVGRTGTFITIDAMLEMMQTEEKVDVFGFVSRMRQN
RSNMVQTEAQYVFIYRALLEQYLYGDTEVEVANIQRRMHKLRT
Run BLAST on NCBI

mRNA from alignment at Sc0000001:7646532..7648550+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97078_cuf7 ID=transcript:BL97078_cuf7|Name=transcript:BL97078_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=2019bp|location=Sequence derived from alignment at Sc0000001:7646532..7648550+ (Branchiostoma lanceolatum)
GTAATATAAAGGCATGCCAGGCTTATGTCTTTAGGTATTGTCTACGATTT ACGTTGTTGATTTTGTCAGTTTGCTGCATTGATAGAATAAGGTTGTTGCA CACATTTCGAACTTCAATAATATACTGGCACTAGTATCCTAAACAGATTC ATATTTGTCACAAGCAGACTTTTTGTAGATATACTTTCAATGATATGCCA ACATGGTGAATCCTAACAGGGCTACAGTGTTGCGAGAAAATTCATCGCTG CACAAGGTAAGAGCTGACCGCTACATCGCACATTGACAGTTTTCTCTCGA ATTATGATTCCTCATAGATATGCAGTACCTATACACTGACTTACATTTCA TATTTTTCATTCATCTAAGACGACTATAGCCCATTTACGGTACTTAAAAA TGAGACATTTCACCCCTTGAAATCATCATAAAACATAACTTACGCGCATT TCTATACTTTAAACTGTAGGTCCCCTGCCTAATACTGTGGGTGATTTCTG GAGGATGATGTGGGAAACCGGGTCAAAAACCATCGTCATGGTGACCAATC TGAAGGAGAAAAACAAGGTACTCACAAGTCCCCTCTTACAGTATCTTCAA CTTTTCTACAGTTAATCAACATGAATATCAATGGTATATTTTTGTGTTTT ATCTTAGCAACTGATAAATCAGCAAGGTCCATCTCATCACTAATCAATTA CAGGACTTGTGATGTCTGAAAGAATCTGTAACGTTACTTTAGATACTTTC GAGTCATTAAGCCACCATTAATAGCCGACGTTTATGTTTTGAATATGTAA TTTTTACCTTCACAGCAAAAGTGTACACAGTACTGGCCGGACAGTGGGAA GCAGACTTATGGAGACATTGACGTCACCTTGGTTGACACCATCCCGATGG TGGATCTAGCGACAAGGATATTTCTGGTTACAAAGGTGACTGCAAAAATG TATTATTTTAGAAGCAAATAAATTACAGATGATTTGACATTTTTTTAAAT TCTACATCGTAAGGCCAGACCAAAGATTTTAAACCTAACAATTCACCCAG TAATTTGAATTAAAAAAAGTAGCAATACATCTACAATGAACGTAGTCGTA GGTTCATCTGGTTTGAGAATTCATATTTCCTGTCTCCGAAGAACTCTTGA AAACTGACGTCTTCCGAATATGCCACTGCCCAGGATGTTCTTGACTCTAT ATGATGAACAATCGTTGGTATTAGGACCATGGGATATCTGATATCAACTT CAATTCCGTCTCACCACTATAAACACACAGGATGGTGTCCATGGACGACG TCAGGTGACCCAGTTCCACTTCCTCGGCTGGCCGGACTACGGGCTGCCCC GGAGCCCCATGGGATTGCTGAAGTTCCACAGGACAGTGGTTACTAAGACA ACCAGCAATGACACACCCATCGTTGTTCACTGCAGGTAGAAAGCACAATG AGATGGTGTAAGAAAATTAATCTAGTAACGGCCCTATATGGTAATTGTTG TGTATAATTGTATTGAAGAGAGAAGAGTCTTGAAAATGGTGTAGGGATGT ATCGCTATCCTTAAGATTCTATACAGCCATTTTCTCCCAATGTCCTTTGC ATTTTTTATCGCTATTGGTTCTGAATCTGGAAGATACATGATAACACAAT GTCTATTCTGCAGTGCTGGTGTTGGCCGCACGGGCACGTTCATCACCATA GACGCCATGTTGGAGATGATGCAGACTGAAGAGAAAGTGGACGTGTTCGG GTTTGTGTCCAGGATGCGGCAGAACAGGAGCAACATGGTTCAGACAGAGG TACGCATATCACCAAAGAAATCCTCCCGACCTGCAGTTAATTGTACATGA TATCAAATTGATATAAAATTTTATTTCTACATATAAAAATCCAATTATCT TGAACATCTCTAGGCCCAGTACGTGTTCATCTACCGAGCCTTACTGGAAC AGTACCTGTATGGAGACACGGAGGTGGAGGTGGCCAACATCCAGCGCCGC ATGCACAAACTCAGGACCG

Coding sequence (CDS) from alignment at Sc0000001:7646532..7648550+

>transcript:BL97078_cuf7 ID=transcript:BL97078_cuf7|Name=transcript:BL97078_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=2895bp|location=Sequence derived from alignment at Sc0000001:7646532..7648550+ (Branchiostoma lanceolatum)
ATGATGTGGGAAACCGGGTCAAAAACCATCGTCATGGTGACCAATCTGAA
GGAGAAAAACAAGCAAAAGTGTACACAGTACTGGCCGGACAGTGGGAAGC
AGACTTATGGAGACATTGACGTCACCTTGGTTGACACCATCCCGATGGTG
GATCTAGCGACAAGGATATTTCTGGTTACAAAGGATGGTGTCCATGGACG
ACGTCAGGTGACCCAGTTCCACTTCCTCGGCTGGCCGGACTACGGGCTGC
CCCGGAGCCCCATGGGATTGCTGAAGTTCCACAGGACAGTGGTTACTAAG
ACAACCAGCAATGACACACCCATCGTTGTTCACTGCAGTGCTGGTGTTGG
CCGCACGGGCACGTTCATCACCATAGACGCCATGTTGGAGATGATGCAGA
CTGAAGAGAAAGTGGACGTGTTCGGGTTTGTGTCCAGGATGCGGCAGAAC
AGGAGCAACATGGTTCAGACAGAGGCCCAGTACGTGTTCATCTACCGAGC
CTTACTGGAACAGTACCTGTATGGAGACACGGAGGTGGAGGTGGCCAACA
TCCAGCGCCGCATGCACAAACTCAGGACCATGATGTGGGAAACCGGGTCA
AAAACCATCGTCATGGTGACCAATCTGAAGGAGAAAAACAAGCAAAAGTG
TACACAGTACTGGCCGGACAGTGGGAAGCAGACTTATGGAGACATTGACG
TCACCTTGGTTGACACCATCCCGATGGTGGATCTAGCGACAAGGATATTT
CTGGTTACAAAGGATGGTGTCCATGGACGACGTCAGGTGACCCAGTTCCA
CTTCCTCGGCTGGCCGGACTACGGGCTGCCCCGGAGCCCCATGGGATTGC
TGAAGTTCCACAGGACAGTGGTTACTAAGACAACCAGCAATGACACACCC
ATCGTTGTTCACTGCAGTGCTGGTGTTGGCCGCACGGGCACGTTCATCAC
CATAGACGCCATGTTGGAGATGATGCAGACTGAAGAGAAAGTGGACGTGT
TCGGGTTTGTGTCCAGGATGCGGCAGAACAGGAGCAACATGGTTCAGACA
GAGGCCCAGTACGTGTTCATCTACCGAGCCTTACTGGAACAGTACCTGTA
TGGAGACACGGAGGTGGAGGTGGCCAACATCCAGCGCCGCATGCACAAAC
TCAGGACCATGATGTGGGAAACCGGGTCAAAAACCATCGTCATGGTGACC
AATCTGAAGGAGAAAAACAAGCAAAAGTGTACACAGTACTGGCCGGACAG
TGGGAAGCAGACTTATGGAGACATTGACGTCACCTTGGTTGACACCATCC
CGATGGTGGATCTAGCGACAAGGATATTTCTGGTTACAAAGGATGGTGTC
CATGGACGACGTCAGGTGACCCAGTTCCACTTCCTCGGCTGGCCGGACTA
CGGGCTGCCCCGGAGCCCCATGGGATTGCTGAAGTTCCACAGGACAGTGG
TTACTAAGACAACCAGCAATGACACACCCATCGTTGTTCACTGCAGTGCT
GGTGTTGGCCGCACGGGCACGTTCATCACCATAGACGCCATGTTGGAGAT
GATGCAGACTGAAGAGAAAGTGGACGTGTTCGGGTTTGTGTCCAGGATGC
GGCAGAACAGGAGCAACATGGTTCAGACAGAGGCCCAGTACGTGTTCATC
TACCGAGCCTTACTGGAACAGTACCTGTATGGAGACACGGAGGTGGAGGT
GGCCAACATCCAGCGCCGCATGCACAAACTCAGGACCATGATGTGGGAAA
CCGGGTCAAAAACCATCGTCATGGTGACCAATCTGAAGGAGAAAAACAAG
CAAAAGTGTACACAGTACTGGCCGGACAGTGGGAAGCAGACTTATGGAGA
CATTGACGTCACCTTGGTTGACACCATCCCGATGGTGGATCTAGCGACAA
GGATATTTCTGGTTACAAAGGATGGTGTCCATGGACGACGTCAGGTGACC
CAGTTCCACTTCCTCGGCTGGCCGGACTACGGGCTGCCCCGGAGCCCCAT
GGGATTGCTGAAGTTCCACAGGACAGTGGTTACTAAGACAACCAGCAATG
ACACACCCATCGTTGTTCACTGCAGTGCTGGTGTTGGCCGCACGGGCACG
TTCATCACCATAGACGCCATGTTGGAGATGATGCAGACTGAAGAGAAAGT
GGACGTGTTCGGGTTTGTGTCCAGGATGCGGCAGAACAGGAGCAACATGG
TTCAGACAGAGGCCCAGTACGTGTTCATCTACCGAGCCTTACTGGAACAG
TACCTGTATGGAGACACGGAGGTGGAGGTGGCCAACATCCAGCGCCGCAT
GCACAAACTCAGGACCATGATGTGGGAAACCGGGTCAAAAACCATCGTCA
TGGTGACCAATCTGAAGGAGAAAAACAAGCAAAAGTGTACACAGTACTGG
CCGGACAGTGGGAAGCAGACTTATGGAGACATTGACGTCACCTTGGTTGA
CACCATCCCGATGGTGGATCTAGCGACAAGGATATTTCTGGTTACAAAGG
ATGGTGTCCATGGACGACGTCAGGTGACCCAGTTCCACTTCCTCGGCTGG
CCGGACTACGGGCTGCCCCGGAGCCCCATGGGATTGCTGAAGTTCCACAG
GACAGTGGTTACTAAGACAACCAGCAATGACACACCCATCGTTGTTCACT
GCAGTGCTGGTGTTGGCCGCACGGGCACGTTCATCACCATAGACGCCATG
TTGGAGATGATGCAGACTGAAGAGAAAGTGGACGTGTTCGGGTTTGTGTC
CAGGATGCGGCAGAACAGGAGCAACATGGTTCAGACAGAGGCCCAGTACG
TGTTCATCTACCGAGCCTTACTGGAACAGTACCTGTATGGAGACACGGAG
GTGGAGGTGGCCAACATCCAGCGCCGCATGCACAAACTCAGGACC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97078gene:BL97078Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97078_cuf7transcript:BL97078_cuf7-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97078_cuf7-E1BL97078_cuf7-E1-1564476830-29068Branchiostoma lanceolatumexon
BL97078_cuf7-E2BL97078_cuf7-E2-1564476830-29070Branchiostoma lanceolatumexon
BL97078_cuf7-E3BL97078_cuf7-E3-1564476830-29072Branchiostoma lanceolatumexon
BL97078_cuf7-E4BL97078_cuf7-E4-1564476830-29074Branchiostoma lanceolatumexon
BL97078_cuf7-E5BL97078_cuf7-E5-1564476830-29077Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:7646532..7648550 +
Properties
Property NameValue
Transcript idBL97078_cuf7
Biotypeprotein_coding