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transcript:BL97076_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97076_cuf1
Unique Nametranscript:BL97076_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97076_cuf1

>transcript:BL97076_cuf1-protein ID=transcript:BL97076_cuf1-protein|Name=transcript:BL97076_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=122bp
IPVRPTNAISCLGRQNGVSDKVITFKMREDADVKPRLFSRTVNVGDPVTL
QMVRNPESTRTGDLEWRKDGVVLQGQTSLTLSINSVQSSDMGIYECYYKG
AYSDRKQGIMRLIVRACAENKY
Run BLAST on NCBI

mRNA from alignment at Sc0000001:7637128..7638133+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97076_cuf1 ID=transcript:BL97076_cuf1|Name=transcript:BL97076_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=1006bp|location=Sequence derived from alignment at Sc0000001:7637128..7638133+ (Branchiostoma lanceolatum)
TATACCGGTGCGTCCTACAAACGCCATTTCCTGCTTAGGTCGGCAAAATG GCGTCTCGGACAAAGTTATCACGTTCAAGATGAGGGAAGACGGTATGACA AGTTTTAGCATATTGTAAATATCTATTAACCAAATCCATAAATTCTTTGC TCTGTGTTTTGCTGACACTGATCTCTTATTGCAGAAGTTCTACATGCTTC TTTCTGACTCAGGCTTACATGAATCAGGTGTCGACCATCGATCTACACTG TCCCTCCAGCATTCAGTATACACAAGACTACTGTGTAACCCCCTGTGTTT CAGCCGACGTGAAGCCCAGACTGTTCTCCCGGACTGTGAATGTGGGAGAC CCGGTAACGTTGCAGATGGTTCGGAACCCAGAATCGACCAGGACTGGAGA CTTGGAGTGGAGGAAGGACGGAGTCGTCCTACAGGGTCAAACGTCTCTCA CACTCAGCATCAACAGTGTCCAGTCTTCAGATATGGGGATCTATGAGTGC TACTATAAAGGGGCTTATTCCGACAGGAAGCAGGGCATCATGAGGCTCAT AGTCAGGGGTAAGTTACTATCATGTATATATGTACACATCCTGGTCCCTT GTGCATGCATGGAGGCCGCAATTTCAGTATTTCCAGAACAGTTATTTCCT GGCAGTTACTTACACACGGGTGCTTATTCGGGTGACATCAACATATCAAT TATTGATGAACAATAGCATCATGATATTGCTTCATTCACCCATGCCATAA TAACGGGATACGACATCACATAGCAGAGTGTCTGTGGTTGGGAGTATTGC TCCTATGTTCCATATATCCATCCACCGTACATTTACAACAATGTACTTGA ATAAAATTTCCCTGGTCTAGAATTTTGTACGTATGATATTGAAAACGATT AGATATGCTTCGAAAAGAATGTTTCAATTGTGTGCAACCATGACAGACAG GCAGTCTAACTTAATGATTGTACGTTATACTGCAGCCTGTGCAGAGAACA AGTACG

Coding sequence (CDS) from alignment at Sc0000001:7637128..7638133+

>transcript:BL97076_cuf1 ID=transcript:BL97076_cuf1|Name=transcript:BL97076_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1098bp|location=Sequence derived from alignment at Sc0000001:7637128..7638133+ (Branchiostoma lanceolatum)
ATACCGGTGCGTCCTACAAACGCCATTTCCTGCTTAGGTCGGCAAAATGG
CGTCTCGGACAAAGTTATCACGTTCAAGATGAGGGAAGACGCCGACGTGA
AGCCCAGACTGTTCTCCCGGACTGTGAATGTGGGAGACCCGGTAACGTTG
CAGATGGTTCGGAACCCAGAATCGACCAGGACTGGAGACTTGGAGTGGAG
GAAGGACGGAGTCGTCCTACAGGGTCAAACGTCTCTCACACTCAGCATCA
ACAGTGTCCAGTCTTCAGATATGGGGATCTATGAGTGCTACTATAAAGGG
GCTTATTCCGACAGGAAGCAGGGCATCATGAGGCTCATAGTCAGGGCCTG
TGCAGAGAACAAGTACATACCGGTGCGTCCTACAAACGCCATTTCCTGCT
TAGGTCGGCAAAATGGCGTCTCGGACAAAGTTATCACGTTCAAGATGAGG
GAAGACGCCGACGTGAAGCCCAGACTGTTCTCCCGGACTGTGAATGTGGG
AGACCCGGTAACGTTGCAGATGGTTCGGAACCCAGAATCGACCAGGACTG
GAGACTTGGAGTGGAGGAAGGACGGAGTCGTCCTACAGGGTCAAACGTCT
CTCACACTCAGCATCAACAGTGTCCAGTCTTCAGATATGGGGATCTATGA
GTGCTACTATAAAGGGGCTTATTCCGACAGGAAGCAGGGCATCATGAGGC
TCATAGTCAGGGCCTGTGCAGAGAACAAGTACATACCGGTGCGTCCTACA
AACGCCATTTCCTGCTTAGGTCGGCAAAATGGCGTCTCGGACAAAGTTAT
CACGTTCAAGATGAGGGAAGACGCCGACGTGAAGCCCAGACTGTTCTCCC
GGACTGTGAATGTGGGAGACCCGGTAACGTTGCAGATGGTTCGGAACCCA
GAATCGACCAGGACTGGAGACTTGGAGTGGAGGAAGGACGGAGTCGTCCT
ACAGGGTCAAACGTCTCTCACACTCAGCATCAACAGTGTCCAGTCTTCAG
ATATGGGGATCTATGAGTGCTACTATAAAGGGGCTTATTCCGACAGGAAG
CAGGGCATCATGAGGCTCATAGTCAGGGCCTGTGCAGAGAACAAGTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97076gene:BL97076Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97076_cuf1transcript:BL97076_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97076_cuf1-E1BL97076_cuf1-E1-1564476830-29031Branchiostoma lanceolatumexon
BL97076_cuf1-E2BL97076_cuf1-E2-1564476830-29033Branchiostoma lanceolatumexon
BL97076_cuf1-E3BL97076_cuf1-E3-1564476830-29036Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000001genomeSc0000001:7637128..7638133 +
Properties
Property NameValue
Transcript idBL97076_cuf1
Biotypeprotein_coding