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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97072_cuf2 >transcript:BL97072_cuf2-protein ID=transcript:BL97072_cuf2-protein|Name=transcript:BL97072_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=222bp
KKRPCQCKKCILKRQNAVTFPREDRDDDDDEHSGDDREYESGSEDGHNDS
GEDGGDSDKDGRDDGSASDHHDEEAQVDVRHGIPVVARRSSLVPTAVRSS
TYPDTDPSLSDPYCLRVPSPSKPIGTEVTETSALLSWQPPAKRLDEIVGY
KLEVRQQHQSEWTSSKNVCTETSCRIAGLTPDTIYRFRARAVTDTDESEP
SYQSDPIRTLKSRRNPPGKPIA Run BLAST on NCBI mRNA from alignment at Sc0000083:346157..352540+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97072_cuf2 ID=transcript:BL97072_cuf2|Name=transcript:BL97072_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=6384bp|location=Sequence derived from alignment at Sc0000083:346157..352540+ (Branchiostoma lanceolatum)
AAGAAGAGACCCTGTCAGTGTAAGAAGTGCATCCTCAAGAGACAAAATGC
TGTCACCTTCCCAAGGGAGGATAGGGACGATGATGATGATGAGCACTCTG
GGGACGATAGAGAGTACGAGAGCGGCAGCGAGGATGGTCACAACGATTCT
GGCGAGGTGAGTATCCATTCAGTCAATCCGATGTAGTTAGATGCACAATT
CTCTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCT
TTCTCTTTCTCTTTCTCTTTCTCTCTCTCTCTCTCTCAGTCTCTCTCTCT
CTCTCCCTCCCTCCCTCCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTTT
CTTTCTCAGAATGGTGCAAAATGAAGCATATGTGGGGTCGTGTGGCGTAA
CCGCAGGGTGTTCGGCCCAGAACCCAGCGGTGCCGGGTTCGAATCCCCCG
ACGCCACCGATTTTGTGTCCTTGGGAAAGGCACTTTACACGACTTTCCTC
ACTCCACCCAGGTGTAGAAATGGGTACATTGTTTAAAAAAAAAGAAACAA
CCTATCATCATAAAACGACAATAAGACAAACAAATCAAGACTAGCAACTA
AGACGTTAGTTTTTAAGGTCAGAGGATCATTAGCATCTTTAGTCTACAGC
ACAACAGTTCAAAACACTTGTCTTTCTTATTTCAGGACGGGGGAGATTCC
GACAAAGACGGCAGGGATGACGGATCTGCTAGGTAAGGGACGATGATAGT
GTTATAATACTGGAGAGAAGTTTTCCACGTATCTGCTTGGCTTTGGCCTG
GAAGCAATGGGATTCTTTACTTGTGTTGTGTTGTGTTGTCTGCCTATATG
CAATGTGTCGTTACAGTTTAAGTACAACTGTATATGAATATTTGTACATT
TGTGTACAGCAGTTTTCTACGTGCAAAACGACACCTGGCGGTTTGTTAGG
ATACTGCATTGCTTTGTAATTCTAGTATACTGTAAAACCTGTTTACAAGC
TAGAAGGTTTAATGGAATCATTAAATTTGGTTTATCTTATCAATTATAGA
GATTAGAAGTAGCTGCATTGGACGATTTGATAAATGCAAACACCTGTTAC
ATACTAGCCTGGTCCCAGTCTATAGGGGTCGGCTCAGGGGTGTTTTACCG
GGCCCAGTCTGCTTTATTGAGCCGTTTGCTATATTGAGCCGTTTCTGTCA
GCCTGTCTACTTAGCTGACATAAAGAATTTCGAAGCCTTTCTACTTTAGC
TGCCATAGAGAGTTCCACCGCTAATCCAAGGCCGTAAACACACCCCGAGC
GGACTAAGCCGTCTGGGCGGGCGAGGAGCACTCCCAGTGCCGTAGAGATA
TCGGGGAGCCCCCGATGGTATGGTTTACAGGCTAGTTACATACCGATATG
AGAGTCACTTCTCTGCCTAGAACAGTACACAACAGTAAAGAAACATTATA
ACAATAACAATATGCCACATTAGAAATATACATTATGTCACATTTTAATA
CTAAGTCAAAATAGCTAATTATTATAGGATTAGTGGTGGTCCTTGGTAGT
GGTTTTATATTCTATGGTTCCCTTTAAAAACGGAAAAATCGCAACATCCA
GGGGTTAAGCTCCGGTTACACATAGCCGAACATGGCCTCCCGACTCTCCC
CCGACCATGGTTTGGAGTGATTCGGGAGCTAGGTCGGCTGTGGTCGGCTA
GCGTTCGGGACCCATGTTCGGACATATGTAACCGGGGCTCTAGTGACCTC
GTTGCTCTGTTTTGTCCTCGAATTTTCGACGCACCATCAAACAAAGTGGT
TTGATCCGATACGTTATCAAGACAAAACAGCTGTTCTGGGGATATATAAC
CAAATAATAGCTAGATAATTACGCTACATATTGTCGGCATCTTTTTGATA
CCAGAAAAAAATGTAATCGGCGGAAATTCGCAGACAATATCTACGAGGCA
TGAGACAGTGTCGAATAACGGCGTCTGAGAAAATGACAAGTCCAACCTCT
CTCACGGTTACCTGACTAAACGTAACCCTGAGATGTTGGATTTACCCTTT
GTTTGGGGCTCGCGGTGTGACGTTGAAATTAAAGGGTAGACAGATAAAAA
GGATAACTTGTTTACAGGGAATATTTCACTTTGATCTGCATTCATAATGC
GTTACACATAAGGGCTGAACGATATACGTGTAACAATGTACTATCCGCAA
CCCTATCCGTAACCCTATAGCTATCCGCAACCCTATTATGGGATCGTGTG
GCGCAACGGCAGAGCTCGAGTGTTCGGCCCAGAACCGAGAGGTACCGGGT
TCGAAACCACTGCTGTTGTGCCCTTGGGAAAGGCACTTTACACGACTTTC
CTCACTCCACCCAGGTGTAATGCAAATGGGTACCTGACTTCGGTTGGCGA
AGGTCGTATTGAGGTCACCTGGTGGAGCCGAATGGCAGCCACCCAGACCC
TTGCGACTGTTCTGCAAAATGCAAGTGTGGATAAAATATGTATGTGTTGT
GTAATATGTGAAACCTATAAACCCTGCATCAATTCAGTACTAGAAAGGCT
GCCACTGCGGGTAATTTCTGACCAATAAAAACATTATTATGTCGACAGGG
TTTCAATATCAGAGGTGGACGTTTGATAGGATAGCTTATGTAGAGGGAAA
GTTACTTCTCCGTTAATTTTCTGTCTCGGTGACTTACGGTGATTTTCGTA
TACACCATTCACCCGGACGGGAGACCTGGCGCATCCCCGTCTTGTATCAG
ACAACGAAAGGTGCGTAAGCCGACGTTGCTGCCCGTTCGCCCGTCCGGGT
GAATGGTGTAAATCACCGTATGGCTGATACGAGACGGAGGTTCGTATCGG
CCTCCATCCGGGTGATTTGTAGTCAATCACCAACTCCAGACAGAAGGGTT
TGGTCCATCGCACACCGGGGCATGCCCCTACTCTTTTCCGAAAGGTGTGT
TGGGTTCTTTTACGTGCGCGGGGTGTGGCTCTTCCCAAACACGGGACCTC
CATTTAACGTCCTATCCGAGGGACGTCCCTAACTCTAGATGAGCTAGGTA
CTCATTTACACCTGAGTGAAGTGAGGAAAGTCGTGTTAAGTGCCTTTCCC
AAGGGCACAAAGTCGGGGTACAGTCCAGACATGTCTGGGGACAGCCCGGG
ATCAAACTCGGGTCCCCTTGTTTGACAGTCGAATGTTCTAACCATTACGC
CATACGACGCCACTTTAACCTTCACTGTACTGTCTGACTTCTAGTGACCA
CCATGACGAGGAGGCCCAGGTCGATGTCCGACACGGCATCCCGGTGGTCG
CCAGGAGGTCCAGTTTGGTCCCCACGGCAGTCAGGTCAAGTACGTATCCG
GACACTGACCCGAGTCTGTCCGATCCCTATTGCCTGCGAGGTAAGATAGA
GTCACAGATGCCTCCGCCCCTGAGGTGCCGCCAAAAATGGCGGGAAGAAA
AAACACAAACAACCTCCTTTGGTGACGTCACTCTTGTAGCTGTAACGCAT
TTGTGTCAAGGTAGTATAGTCATGTCACAGATGCCTCCGCCCCGGAGGTG
CAGCCAAAAATGGCGGGAGGAGCACTGAAGAATAACACAAACAACCCTCT
TTGGTGACGTCACGCATGTAGCTGTATCGCATTTGTATCAAGGTAGTATA
GCAATGTAGCAACTGTCGTATACAGTACATTAGAATAGAAATTTTAGATT
CTTGGATTTGGTGAGAATATATTTCTTATTTTCGGTGTGAAATGGCCTAT
GTTATTCAGCTTTCCTATTGGTTGAAACAATCCTCTCATGGCCTATATGG
GCACTTACTGTATATTAAAAGCTCTGATTTAAAAGAAAGGTGGCTAGGTT
TGGTGTTTCCGTAAAAAAATAACTTGAACTAAGGTGTGCAGTAGCGTAGG
GTGAAATGAGGTTATATTGAGATAAAACGTGTTCAGTGAAAAGGGAATTT
TCCATAATGGCGGAATGCCCTTGACATACCAAGCAACGCTTGGAAACGTA
GTTGTGTTGGGATGTTAAGTGGCATTTGTATCGAATAAAGAGACACAACA
GTCAAGGCCACTGTTGTATTTGGGGCACTCTTATTATGACTTCAAACAAA
ACGGAGGCCCACGCCAAGGTCTTTCTTTTCAAACCACCATTATGACACCT
GGGTCTGACACGTAATGTCAAGAACCAAAGCCTTTCTTCTCCATTCCACT
CTGGCCGTATTTTTTCAAAGTAAACATTACAATGATAGCAAAAAAAATCC
ATGTCGTAGTTCCAGCAGTGCCGCAGGGATTTTAGATAAGGTCAGAGGTT
AGAAATAAAACAAAAATCCACGAGGGAACTTTGAAAACACGCCCAGACAA
AGAAAACGATATGAACTTTAAACTATTACCTTATACCACAATGCATCAGG
TCTGCACATGCGCACTTGGAACAGTGAGGTGGATTATAGAAGCCACCGAT
CGTCAGACTATAGGAAAAATGCGTTTCATAAAATCCACCAAGACTGGACA
GCAAATAACAGCTTATGGTTGTAGAGGAAACAAAACTTTTAAATAATGGT
TTCGACATGTCTTCTTCCTATGTCATGTATACTGACCTGTATAATGTTGC
TCTCCCCACGCTTACCCCTGAAGTTCCCTCACCGAGCAAGCCGATTGGTA
CCGAAGTTACCGAGACGTCGGCCCTGTTGTCATGGCAACCGCCTGCCAAA
CGACTGGACGAGATCGTGGGCTACAAATTAGAGGTAAGAACGGCTGTTTC
TGGAAATGTCACATGCCTATGTGCTGATCATAGGCCAACTCTGTTTAGAC
TGTTGTGTGGAATGCTGGCGATGATAAACTTTTGAGCATGATAGACGTGT
TCATGTGACGTCATCCCTGTGTCCGTCGCCATGTTGGTCCGTATCTGCAT
TTCAGCTCATTTTTGCTTAGCGTTTTCATTTAAAGATCTTCCGACCTTCT
CAAAACACTCAAGTCAAAGCCCATGGAAGAGAAAACCAGAAGAATACTGA
GGAACTTGCCAATAAAACTAAAAGAATAATGAATAAGCTTGCGATACGAT
CGATCGAAATGCAAATATGGACACCAACATGGTCGCCAGTAGTACCTGCC
CGCGGCACTGATTCATATGGATTGTGAGTGAACACGCTATTAAGCTCTTG
GATTCATGGTAAATAAGGGTTTCAAATATCGTTTCAACGTTAATGACATG
TATTGTAAAGCCTCATACTGCAATGCGGCTTCGCGTATCTAGCTGGTCAG
CTCGCGGTCCACTGAATTTGAAAATATTACATGTTATAAAATCTCCCCCG
CGTAGGTCCGTCAGCAGCACCAGTCTGAGTGGACCTCCTCGAAGAACGTC
TGCACGGAGACGTCCTGCCGAATCGCCGGGCTCACTCCGGACACCATCTA
CCGCTTCCGCGCACGCGCCGTCACCGACACGGACGAAAGCGAACCCAGCT
ACCAGTCAGACCCCATACGGACCCTCAAGAGTAGACGTAGGAAAAGTTCG
ATTACTGATCTAAGCAGAGAACTTCTAAATAATGTTCTCTCCCTCCTATC
ACTATGCAGTCCCTTCCCTTCGTGTTCCGTTGTTTTGTTCACCTTTTGCA
TCTTTAGTCCAAGTTTCCAGCGTTTTCAGTGTTACTAGTATATTACGTTC
GTGTTAACGTTGGGTAACATGTATCGAAAAATACATTAAGAAATATCGTA
AAGGCAACCAAAGCAATGTTAGGAACTACAAAATGTAAATTAAAAAAAAT
GCTGAAATCTTTATTGTAGTGACATTTATTAACACTGTCTAGGACATTTA
TGTAATAACTTCATACTTTTAGCATTCTAAAACCGTGCAAAAATATGCCA
TACGATGATCTCCTTTATTTCGCGAGCCTACAAAAACCCTGGTGAAGATT
TTCGGTGAGTTCTCACATTACAACGAAGTCATATTTTTGCATTAGGGACG
GCGCTATACATTGTGATAGTCTTGTTTGAACTAATTGTGTATAGAAATGA
CTAAATAACTTGACTTTCGAAGTCCGATTTTCGGGCCCTAATATTGCTTG
GGTTGCCTTTAATGCTAGATAGAGAAATGTAGCCTGAGTGTCTTCCTATA
TCGTTAGTCCGGGTAAACTATGATAGCACCCAGGCTAGGAGAAATGCAGC
AGTAAGCTACTTCATCGTACAGGAAACAAACAAGGCACTTTATGTGCTGC
ATATGTACGTATCGAGTTAGCCATAGTTTTAGATGCCTGTGCCTTTGCCC
TGTCTCTTAGCATACATTACCACAAACCATAATCGCCTAGTCAAGTTATA
AGAACTTCCATAAAGATTTATCTATATCTACATTTTGTGTCAAAAACTTT
CTACAGGCAATCCTCCCGGCAAACCTATCGCGAC Coding sequence (CDS) from alignment at Sc0000083:346157..352540+ >transcript:BL97072_cuf2 ID=transcript:BL97072_cuf2|Name=transcript:BL97072_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=3996bp|location=Sequence derived from alignment at Sc0000083:346157..352540+ (Branchiostoma lanceolatum)
AAGAAGAGACCCTGTCAGTGTAAGAAGTGCATCCTCAAGAGACAAAATGC
TGTCACCTTCCCAAGGGAGGATAGGGACGATGATGATGATGAGCACTCTG
GGGACGATAGAGAGTACGAGAGCGGCAGCGAGGATGGTCACAACGATTCT
GGCGAGGACGGGGGAGATTCCGACAAAGACGGCAGGGATGACGGATCTGC
TAGTGACCACCATGACGAGGAGGCCCAGGTCGATGTCCGACACGGCATCC
CGGTGGTCGCCAGGAGGTCCAGTTTGGTCCCCACGGCAGTCAGGTCAAGT
ACGTATCCGGACACTGACCCGAGTCTGTCCGATCCCTATTGCCTGCGAGT
TCCCTCACCGAGCAAGCCGATTGGTACCGAAGTTACCGAGACGTCGGCCC
TGTTGTCATGGCAACCGCCTGCCAAACGACTGGACGAGATCGTGGGCTAC
AAATTAGAGGTCCGTCAGCAGCACCAGTCTGAGTGGACCTCCTCGAAGAA
CGTCTGCACGGAGACGTCCTGCCGAATCGCCGGGCTCACTCCGGACACCA
TCTACCGCTTCCGCGCACGCGCCGTCACCGACACGGACGAAAGCGAACCC
AGCTACCAGTCAGACCCCATACGGACCCTCAAGAGTAGACGCAATCCTCC
CGGCAAACCTATCGCGAAGAAGAGACCCTGTCAGTGTAAGAAGTGCATCC
TCAAGAGACAAAATGCTGTCACCTTCCCAAGGGAGGATAGGGACGATGAT
GATGATGAGCACTCTGGGGACGATAGAGAGTACGAGAGCGGCAGCGAGGA
TGGTCACAACGATTCTGGCGAGGACGGGGGAGATTCCGACAAAGACGGCA
GGGATGACGGATCTGCTAGTGACCACCATGACGAGGAGGCCCAGGTCGAT
GTCCGACACGGCATCCCGGTGGTCGCCAGGAGGTCCAGTTTGGTCCCCAC
GGCAGTCAGGTCAAGTACGTATCCGGACACTGACCCGAGTCTGTCCGATC
CCTATTGCCTGCGAGTTCCCTCACCGAGCAAGCCGATTGGTACCGAAGTT
ACCGAGACGTCGGCCCTGTTGTCATGGCAACCGCCTGCCAAACGACTGGA
CGAGATCGTGGGCTACAAATTAGAGGTCCGTCAGCAGCACCAGTCTGAGT
GGACCTCCTCGAAGAACGTCTGCACGGAGACGTCCTGCCGAATCGCCGGG
CTCACTCCGGACACCATCTACCGCTTCCGCGCACGCGCCGTCACCGACAC
GGACGAAAGCGAACCCAGCTACCAGTCAGACCCCATACGGACCCTCAAGA
GTAGACGCAATCCTCCCGGCAAACCTATCGCGAAGAAGAGACCCTGTCAG
TGTAAGAAGTGCATCCTCAAGAGACAAAATGCTGTCACCTTCCCAAGGGA
GGATAGGGACGATGATGATGATGAGCACTCTGGGGACGATAGAGAGTACG
AGAGCGGCAGCGAGGATGGTCACAACGATTCTGGCGAGGACGGGGGAGAT
TCCGACAAAGACGGCAGGGATGACGGATCTGCTAGTGACCACCATGACGA
GGAGGCCCAGGTCGATGTCCGACACGGCATCCCGGTGGTCGCCAGGAGGT
CCAGTTTGGTCCCCACGGCAGTCAGGTCAAGTACGTATCCGGACACTGAC
CCGAGTCTGTCCGATCCCTATTGCCTGCGAGTTCCCTCACCGAGCAAGCC
GATTGGTACCGAAGTTACCGAGACGTCGGCCCTGTTGTCATGGCAACCGC
CTGCCAAACGACTGGACGAGATCGTGGGCTACAAATTAGAGGTCCGTCAG
CAGCACCAGTCTGAGTGGACCTCCTCGAAGAACGTCTGCACGGAGACGTC
CTGCCGAATCGCCGGGCTCACTCCGGACACCATCTACCGCTTCCGCGCAC
GCGCCGTCACCGACACGGACGAAAGCGAACCCAGCTACCAGTCAGACCCC
ATACGGACCCTCAAGAGTAGACGCAATCCTCCCGGCAAACCTATCGCGAA
GAAGAGACCCTGTCAGTGTAAGAAGTGCATCCTCAAGAGACAAAATGCTG
TCACCTTCCCAAGGGAGGATAGGGACGATGATGATGATGAGCACTCTGGG
GACGATAGAGAGTACGAGAGCGGCAGCGAGGATGGTCACAACGATTCTGG
CGAGGACGGGGGAGATTCCGACAAAGACGGCAGGGATGACGGATCTGCTA
GTGACCACCATGACGAGGAGGCCCAGGTCGATGTCCGACACGGCATCCCG
GTGGTCGCCAGGAGGTCCAGTTTGGTCCCCACGGCAGTCAGGTCAAGTAC
GTATCCGGACACTGACCCGAGTCTGTCCGATCCCTATTGCCTGCGAGTTC
CCTCACCGAGCAAGCCGATTGGTACCGAAGTTACCGAGACGTCGGCCCTG
TTGTCATGGCAACCGCCTGCCAAACGACTGGACGAGATCGTGGGCTACAA
ATTAGAGGTCCGTCAGCAGCACCAGTCTGAGTGGACCTCCTCGAAGAACG
TCTGCACGGAGACGTCCTGCCGAATCGCCGGGCTCACTCCGGACACCATC
TACCGCTTCCGCGCACGCGCCGTCACCGACACGGACGAAAGCGAACCCAG
CTACCAGTCAGACCCCATACGGACCCTCAAGAGTAGACGCAATCCTCCCG
GCAAACCTATCGCGAAGAAGAGACCCTGTCAGTGTAAGAAGTGCATCCTC
AAGAGACAAAATGCTGTCACCTTCCCAAGGGAGGATAGGGACGATGATGA
TGATGAGCACTCTGGGGACGATAGAGAGTACGAGAGCGGCAGCGAGGATG
GTCACAACGATTCTGGCGAGGACGGGGGAGATTCCGACAAAGACGGCAGG
GATGACGGATCTGCTAGTGACCACCATGACGAGGAGGCCCAGGTCGATGT
CCGACACGGCATCCCGGTGGTCGCCAGGAGGTCCAGTTTGGTCCCCACGG
CAGTCAGGTCAAGTACGTATCCGGACACTGACCCGAGTCTGTCCGATCCC
TATTGCCTGCGAGTTCCCTCACCGAGCAAGCCGATTGGTACCGAAGTTAC
CGAGACGTCGGCCCTGTTGTCATGGCAACCGCCTGCCAAACGACTGGACG
AGATCGTGGGCTACAAATTAGAGGTCCGTCAGCAGCACCAGTCTGAGTGG
ACCTCCTCGAAGAACGTCTGCACGGAGACGTCCTGCCGAATCGCCGGGCT
CACTCCGGACACCATCTACCGCTTCCGCGCACGCGCCGTCACCGACACGG
ACGAAAGCGAACCCAGCTACCAGTCAGACCCCATACGGACCCTCAAGAGT
AGACGCAATCCTCCCGGCAAACCTATCGCGAAGAAGAGACCCTGTCAGTG
TAAGAAGTGCATCCTCAAGAGACAAAATGCTGTCACCTTCCCAAGGGAGG
ATAGGGACGATGATGATGATGAGCACTCTGGGGACGATAGAGAGTACGAG
AGCGGCAGCGAGGATGGTCACAACGATTCTGGCGAGGACGGGGGAGATTC
CGACAAAGACGGCAGGGATGACGGATCTGCTAGTGACCACCATGACGAGG
AGGCCCAGGTCGATGTCCGACACGGCATCCCGGTGGTCGCCAGGAGGTCC
AGTTTGGTCCCCACGGCAGTCAGGTCAAGTACGTATCCGGACACTGACCC
GAGTCTGTCCGATCCCTATTGCCTGCGAGTTCCCTCACCGAGCAAGCCGA
TTGGTACCGAAGTTACCGAGACGTCGGCCCTGTTGTCATGGCAACCGCCT
GCCAAACGACTGGACGAGATCGTGGGCTACAAATTAGAGGTCCGTCAGCA
GCACCAGTCTGAGTGGACCTCCTCGAAGAACGTCTGCACGGAGACGTCCT
GCCGAATCGCCGGGCTCACTCCGGACACCATCTACCGCTTCCGCGCACGC
GCCGTCACCGACACGGACGAAAGCGAACCCAGCTACCAGTCAGACCCCAT
ACGGACCCTCAAGAGTAGACGCAATCCTCCCGGCAAACCTATCGCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000083 | genome | Sc0000083:346157..352540 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97072_cuf2 |
| Biotype | protein_coding |
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