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transcript:BL97067_cuf6 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97067_cuf6
Unique Nametranscript:BL97067_cuf6
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97067_cuf6

>transcript:BL97067_cuf6-protein ID=transcript:BL97067_cuf6-protein|Name=transcript:BL97067_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=123bp
EAVPNGWYTCEGYNFPDKCDINCELGFHPTGDDALGCGWTGNWTAVRRSD
ASTTDVENALIEDHISPGGLSCAIADCGSIPVPTNGRLNCSGTTYEEQCD
LTCDEGYEAPYWADFHCTADETW
Run BLAST on NCBI

mRNA from alignment at Sc0000156:182682..183312+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97067_cuf6 ID=transcript:BL97067_cuf6|Name=transcript:BL97067_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=631bp|location=Sequence derived from alignment at Sc0000156:182682..183312+ (Branchiostoma lanceolatum)
TGAGGCAGTCCCCAACGGCTGGTACACATGTGAGGGGTACAACTTTCCCG ACAAGTGTGACATCAACTGTGAGCTGGGGTTCCACCCGACTGGGGATGAC GCCTTGGGCTGCGGCTGGACCGGGAACTGGACCGCCGTGCGGAGGTCTGA CGCTTCGACCACAGACGTGGAAAATGCTCTCATAGAAGGTAGGCATGAGG TTGTACATAACGTCATATATCTGTCGACCGATAAACAGCCTGGTCTTTTC GTTCATGATCGTATACATGTATATCATATGTGAAGAATATCTTCATTGAA TGGTATCCCTACTTTTGCAGATCATATATCTCCAGGAGGCCTGTCGTGTG CCATTGCAGACTGTGGGAGCATTCCAGTAAGAATATATCTTTCTCATTGT TATCAGTTTCGATCACAAATGTGACAGTGGTTCTGCAGACCTTTTGTCGT GTAACAATTATCAAGTATCAAGATGATAGTGTTGGACTTGCATTTTTTTT TCAGGTGCCTACCAATGGGCGACTGAACTGTTCCGGTACAACCTACGAAG AACAGTGTGATTTGACCTGTGATGAAGGATACGAAGCTCCTTATTGGGCG GATTTTCACTGCACTGCCGATGAAACGTGGA

Coding sequence (CDS) from alignment at Sc0000156:182682..183312+

>transcript:BL97067_cuf6 ID=transcript:BL97067_cuf6|Name=transcript:BL97067_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=1107bp|location=Sequence derived from alignment at Sc0000156:182682..183312+ (Branchiostoma lanceolatum)
GAGGCAGTCCCCAACGGCTGGTACACATGTGAGGGGTACAACTTTCCCGA
CAAGTGTGACATCAACTGTGAGCTGGGGTTCCACCCGACTGGGGATGACG
CCTTGGGCTGCGGCTGGACCGGGAACTGGACCGCCGTGCGGAGGTCTGAC
GCTTCGACCACAGACGTGGAAAATGCTCTCATAGAAGATCATATATCTCC
AGGAGGCCTGTCGTGTGCCATTGCAGACTGTGGGAGCATTCCAGTGCCTA
CCAATGGGCGACTGAACTGTTCCGGTACAACCTACGAAGAACAGTGTGAT
TTGACCTGTGATGAAGGATACGAAGCTCCTTATTGGGCGGATTTTCACTG
CACTGCCGATGAAACGTGGGAGGCAGTCCCCAACGGCTGGTACACATGTG
AGGGGTACAACTTTCCCGACAAGTGTGACATCAACTGTGAGCTGGGGTTC
CACCCGACTGGGGATGACGCCTTGGGCTGCGGCTGGACCGGGAACTGGAC
CGCCGTGCGGAGGTCTGACGCTTCGACCACAGACGTGGAAAATGCTCTCA
TAGAAGATCATATATCTCCAGGAGGCCTGTCGTGTGCCATTGCAGACTGT
GGGAGCATTCCAGTGCCTACCAATGGGCGACTGAACTGTTCCGGTACAAC
CTACGAAGAACAGTGTGATTTGACCTGTGATGAAGGATACGAAGCTCCTT
ATTGGGCGGATTTTCACTGCACTGCCGATGAAACGTGGGAGGCAGTCCCC
AACGGCTGGTACACATGTGAGGGGTACAACTTTCCCGACAAGTGTGACAT
CAACTGTGAGCTGGGGTTCCACCCGACTGGGGATGACGCCTTGGGCTGCG
GCTGGACCGGGAACTGGACCGCCGTGCGGAGGTCTGACGCTTCGACCACA
GACGTGGAAAATGCTCTCATAGAAGATCATATATCTCCAGGAGGCCTGTC
GTGTGCCATTGCAGACTGTGGGAGCATTCCAGTGCCTACCAATGGGCGAC
TGAACTGTTCCGGTACAACCTACGAAGAACAGTGTGATTTGACCTGTGAT
GAAGGATACGAAGCTCCTTATTGGGCGGATTTTCACTGCACTGCCGATGA
AACGTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97067gene:BL97067Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97067_cuf6transcript:BL97067_cuf6-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97067_cuf6-E1BL97067_cuf6-E1-1564476830-353007Branchiostoma lanceolatumexon
BL97067_cuf6-E2BL97067_cuf6-E2-1564476830-353009Branchiostoma lanceolatumexon
BL97067_cuf6-E3BL97067_cuf6-E3-1564476830-353012Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000156genomeSc0000156:182682..183312 +
Properties
Property NameValue
Transcript idBL97067_cuf6
Biotypeprotein_coding