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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97063_cuf6 >transcript:BL97063_cuf6-protein ID=transcript:BL97063_cuf6-protein|Name=transcript:BL97063_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=374bp
YLGGYRCTCLPGYTGVHCQYNIDECLGTTCGNGGTCVDLVNDFYCSCLPA
YHGKNCELDVTTCSPNPCEHGGNCTDSGSGTYSCSCSPGYTGQDCEVDVD
ECSSGPCTNGGTCIDMVNDYYCDCLNGFFGQNCDGEVDYCDPNLCQHGGT
CQPITNDYSCTCSTGYMGYNCEIDIDECEGVMCMNNGTCVDGIASYTCRC
LAGFSGSHCGTNIDDCQGRPCENGGTCVDGVASYSCDCPVMFTGERCQLV
ILPNLPETTEPYVSRAQTPTPSFQSTTPDTGGMPAQDSVTAQRVPIIAGS
VVGAIVVIAVAVLGWVFCRSSNAASKVSGLKYVRPASPKVGVVDDSMVLA
QLSRSDRVFVPVRAQENPYFIVED Run BLAST on NCBI mRNA from alignment at xpSc0039702:18476..22434+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97063_cuf6 ID=transcript:BL97063_cuf6|Name=transcript:BL97063_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=3959bp|location=Sequence derived from alignment at xpSc0039702:18476..22434+ (Branchiostoma lanceolatum)
ACTACCTCGGCGGGTACCGATGCACCTGTCTTCCCGGGTACACCGGTGTC
CATTGTCAATACAACATAGATGAGTGCCTTGGAACAACATGTGGCAACGG
AGGAACATGTGTTGATCTGGTGAACGACTTCTACTGCTCCTGTCTACCTG
CCTACCATGGGAAGAACTGCGAGTTAGATGTGACCACCTGCAGTCCGAAC
CCATGTGAGCACGGGGGCAACTGTACTGACTCCGGAAGCGGAACATACTC
CTGTTCATGCAGGTTAGTTCTATGGATCAATTTGATATGGAAGCCTTACA
AGTTTTAATGACAGTCCTAGTTTTTCATGCTCAAAAATTATGAATTATCT
GCAGTTTGGCAGAACAGATCAATTCAATGCCCCAATACGTTAAATTCCTG
TCAATTTTAAACAGTTCTTGCAGTTAACGAGGTACCATTGAACTTGGTGA
TTGAACTTGTGTTTGCACGTTTTACGTTTGTACGGTAGCCGAAAGCAAGG
CATGTACAGCCTCAGTTTCTTACCGCATGGAGTACAGCAAACTGTGACAG
CTCTTATAATATTGACTTACATTGTTTGTATGTCAACAGCCCAGGGTACA
CTGGACAGGACTGTGAAGTGGACGTTGATGAATGCTCCTCAGGCCCTTGT
ACCAATGGCGGCACCTGTATTGACATGGTCAACGATTACTACTGTGACTG
CCTGAACGGCTTCTTCGGACAGAACTGCGATGGAGAAGTGGACTATTGTG
ACCCGAACCTCTGTCAACATGGCGGAACCTGCCAGCCAATCACTAATGAC
TACAGGTAAGACAGGTTTTTATCAAACGTAAGGCCATGTTGATGTGATTA
TATGGATGGCGTGCAAATAAATAAAAAAAATGCAAAAAAAAAAAGAGTTG
CCTTCATTGTGAAATCTATGTGGTAAGGAAGGTTGAACAAGTAACTAACA
CCCAGAGTAGATCCTTTATTTTTATTTCTTCACATCATCTTTGCCGCTGG
AATTGATTTTTGGCATTCTATCCGACATAAGTAGCTTTTTCATTATTCTA
TGTGCATTGTATGGTATATATTCGATCATCTTACAGCTGCTCTGTATGGT
CAAAAACTCTCTTTTTTTAAACGGACGAAAATGTTTGCGCGTGCGGATGT
CATCCATATAATCAAATCAACATGGCCTAATGTATACATTAGGTATTTAT
CAGGTTAGCTAGACCTGCCGGACTAAAAGGTGGATTGTAAAATGATAACA
TCCGCAATGTTAATGTTAAAATGTCCTTGAACATTTCATAAAAGCTTTTA
AACGTTGACCATCTTTTATTCTAGTTGCACCTGCTCTACGGGTTACATGG
GCTACAACTGCGAGATCGACATTGACGAATGTGAAGGAGTCATGTGCATG
AACAACGGCACATGCGTGGACGGGATAGCATCCTACACCTGCAGGTGTCT
AGCTGGTTTCTCCGGTTCGCACTGTGGAACGAACATCGATGATTGCCAAG
GCAGGCCGTGTGAAAATGGCGGCACCTGCGTTGATGGTGTTGCTTCATAC
AGCTGTGACTGTCCCGTTATGTTCACAGGTGAGTATCTTATTTTTGTTCA
TTTTGTTCATTCGCAGATATAGAAACTTTAACAATGAAGTAAATAGAATT
ATTTGAAAAGAGTGAAGAGGGAGGGATGAAGCACTGGTCCATCAAGCTAT
CAAATATTAATCAGAATACATATGATTAAGTGATGAACATGAGGAACAAA
GGTATAACAAGTTATAAACTAATGACGATCATTAGATTGCAAATTAAGCA
TGAGCAAAATATTAAAAATCTTATAAAGTATAGACAATTGATTAATTGAT
AAATACTTGTCTATGCGATGGTCTCTCTAGAACATCAATTATGGACTAAC
TGGTATGGACATAGAATATTTTGCGGCAAACATGCTTCTTAGTTTATCAT
TTACAATGGGCCCTGACAATGGGTACTCAATCCCTGCAGCTGTTTGGAAA
TTGTGATCTACATCTGTACCTCATCTCTTATTGCTATTCTTAATAAACAG
GCGAAAGATGCCAGCTGGTGATTCTCCCCAACCTCCCTGAAACAACAGAG
CCGTATGTCTCCAGGGCGCAGACACCAACGCCATCATTCCAGTCGACAAC
ACCAGATACCGGCGGAATGCCTGCACAGGATTCCGTGACTGCACAGCGCG
TACCGATCATTGCAGGGTCCGTCGTTGGTGCCATAGTCGTCATCGCTGTG
GCAGTCTTGGGTTGGGTTTTCTGCAGATCATCTAATGCAGCGTAAGTGCA
ATATGTAACCTGCATAAACATTAATCCGCCGGGTTACAGAAATCCGCCAC
TTTAAAAAAATAGTGAGTTTGAGAGATCTCTAGTGCAGCATCCCCCAGGT
ATGCACAGTTTACATATACATGTGGAGTGTATTATATTGATGGACGTTGG
ATTTAGATCTGTTTGGACGTACATGTATCTTTTCAGGGTGGCGTAATTAT
GTACCTTTGGTGGAATTATATAAGTAGAAACCAAGTATTCAACCTTTGAT
GTTCCATACAGTATCTATCATTTGACAACAGGCCTAGGGTTGCCTATCCA
CCTTACTTCATACAGTATACCCACAATGTTGTTCTTAAACATCCCGTCAT
TTTCTAAACTGATTGACACAAAAAAATGCAAGGATCCTGTTATTTTAATG
CCACTCAACATCATCATCATAGCTTGTCACTGTTTCTCTCCACCCGGTCC
AGTGCACGTTCGTTGGCTTCTCGAAGGTCAGTGTCTGTGCAGGTAGGTGA
AAGCCACCCTCCTAAAAAAAGGACACATATCGCTCGATCCGTTGGCTCGC
TCGCCAAGGGGCCCTGCTCTTTAGTCTCGGTAGACACGGTTCTGGCGCCA
GAACCGTGTCTACTGGTGCTAAAGAGCAGGGCCCCTGCGCGAGCGAGCCA
ACGAATCGAGCGATAGGGGTCCTGCTTTTAGGAGGGTGGTGAAAGTCTAC
AGCAGTGCATCCCACTGATACAGATGTTTCTTTCTTCTTCTTTTGTGCAT
AGGTCAAAGGTATCAGGACTGAAGTACGTGCGGCCCGCATCACCTAAAGT
TGGTGTGGTAGATGACTCGATGGTTCTCGCCCAACTATCCAGATCTGACC
GTGTCTTTGTTCCTGTGCGTGCCCAAGAAAACCCATACTTCATCGTAGAG
GACTAGTTTTTTTTTAAGAGTGACAAGCAGTCAGTAGGTTTTAATCTAAT
CATTTCTTGTCACGTGATGATCAACGTCCAGTCACGTGACAAGAGAACTC
CAAAACGAGATCTGACTGTAATACCGGGTTGATGACGTGACAGAGGTGGT
CTCGAAAGCTCTTCAGAGCAAACTCTTTATGTTGTGTGTAATGTTTAAAT
ATTTGTCAAAAGCAGTCAGTAGGTTTTCTTGGTACGAATGTGTTACATGG
ATTTTTATACCGCATAGAAAAGCTTGGTTCGTGATATTTTGCACTTTAGT
ACATGAATGTTGCACCCAAAATTATAGAAAAGTAATCCTTTGTACATCAA
TCTGGACTGTGTGATATTTTGCCAGTGAATTTGTTGTAGAGTAGATTGTT
CGACTTTTTATGATGATGGTTGTAAATATGTGATACCAGTAATTCAAATA
TCCATTTTTTTCTTAGCTCGAGTAAGTGCTGATTTCTACTAGTAGACTTT
GCCTTTGTCTTCAGTTTCTACAATTATTGAATTGGCGGGGAGTTGTAGTC
GTTTAGCTTAAATCAAGATATATCGGCACTGACGGCTAACTCTCAAATAC
ATGTCGATACTACGCATTTAATATTTTGACGTTTTTATTTGCAGTGAGAA
ATGAATGGTTTGTAGCGTTTTGCACCTTGTTGGAGAGTGTTAAACTTGTA
CGCTTAGAGCAATATTCATTGCCTGATGAGCTGTGCATGTACATGTGATT
AAATTGGGG Coding sequence (CDS) from alignment at xpSc0039702:18476..22434+ >transcript:BL97063_cuf6 ID=transcript:BL97063_cuf6|Name=transcript:BL97063_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=5625bp|location=Sequence derived from alignment at xpSc0039702:18476..22434+ (Branchiostoma lanceolatum)
TACCTCGGCGGGTACCGATGCACCTGTCTTCCCGGGTACACCGGTGTCCA
TTGTCAATACAACATAGATGAGTGCCTTGGAACAACATGTGGCAACGGAG
GAACATGTGTTGATCTGGTGAACGACTTCTACTGCTCCTGTCTACCTGCC
TACCATGGGAAGAACTGCGAGTTAGATGTGACCACCTGCAGTCCGAACCC
ATGTGAGCACGGGGGCAACTGTACTGACTCCGGAAGCGGAACATACTCCT
GTTCATGCAGCCCAGGGTACACTGGACAGGACTGTGAAGTGGACGTTGAT
GAATGCTCCTCAGGCCCTTGTACCAATGGCGGCACCTGTATTGACATGGT
CAACGATTACTACTGTGACTGCCTGAACGGCTTCTTCGGACAGAACTGCG
ATGGAGAAGTGGACTATTGTGACCCGAACCTCTGTCAACATGGCGGAACC
TGCCAGCCAATCACTAATGACTACAGTTGCACCTGCTCTACGGGTTACAT
GGGCTACAACTGCGAGATCGACATTGACGAATGTGAAGGAGTCATGTGCA
TGAACAACGGCACATGCGTGGACGGGATAGCATCCTACACCTGCAGGTGT
CTAGCTGGTTTCTCCGGTTCGCACTGTGGAACGAACATCGATGATTGCCA
AGGCAGGCCGTGTGAAAATGGCGGCACCTGCGTTGATGGTGTTGCTTCAT
ACAGCTGTGACTGTCCCGTTATGTTCACAGGCGAAAGATGCCAGCTGGTG
ATTCTCCCCAACCTCCCTGAAACAACAGAGCCGTATGTCTCCAGGGCGCA
GACACCAACGCCATCATTCCAGTCGACAACACCAGATACCGGCGGAATGC
CTGCACAGGATTCCGTGACTGCACAGCGCGTACCGATCATTGCAGGGTCC
GTCGTTGGTGCCATAGTCGTCATCGCTGTGGCAGTCTTGGGTTGGGTTTT
CTGCAGATCATCTAATGCAGCGTCAAAGGTATCAGGACTGAAGTACGTGC
GGCCCGCATCACCTAAAGTTGGTGTGGTAGATGACTCGATGGTTCTCGCC
CAACTATCCAGATCTGACCGTGTCTTTGTTCCTGTGCGTGCCCAAGAAAA
CCCATACTTCATCGTAGAGGACTAGTACCTCGGCGGGTACCGATGCACCT
GTCTTCCCGGGTACACCGGTGTCCATTGTCAATACAACATAGATGAGTGC
CTTGGAACAACATGTGGCAACGGAGGAACATGTGTTGATCTGGTGAACGA
CTTCTACTGCTCCTGTCTACCTGCCTACCATGGGAAGAACTGCGAGTTAG
ATGTGACCACCTGCAGTCCGAACCCATGTGAGCACGGGGGCAACTGTACT
GACTCCGGAAGCGGAACATACTCCTGTTCATGCAGCCCAGGGTACACTGG
ACAGGACTGTGAAGTGGACGTTGATGAATGCTCCTCAGGCCCTTGTACCA
ATGGCGGCACCTGTATTGACATGGTCAACGATTACTACTGTGACTGCCTG
AACGGCTTCTTCGGACAGAACTGCGATGGAGAAGTGGACTATTGTGACCC
GAACCTCTGTCAACATGGCGGAACCTGCCAGCCAATCACTAATGACTACA
GTTGCACCTGCTCTACGGGTTACATGGGCTACAACTGCGAGATCGACATT
GACGAATGTGAAGGAGTCATGTGCATGAACAACGGCACATGCGTGGACGG
GATAGCATCCTACACCTGCAGGTGTCTAGCTGGTTTCTCCGGTTCGCACT
GTGGAACGAACATCGATGATTGCCAAGGCAGGCCGTGTGAAAATGGCGGC
ACCTGCGTTGATGGTGTTGCTTCATACAGCTGTGACTGTCCCGTTATGTT
CACAGGCGAAAGATGCCAGCTGGTGATTCTCCCCAACCTCCCTGAAACAA
CAGAGCCGTATGTCTCCAGGGCGCAGACACCAACGCCATCATTCCAGTCG
ACAACACCAGATACCGGCGGAATGCCTGCACAGGATTCCGTGACTGCACA
GCGCGTACCGATCATTGCAGGGTCCGTCGTTGGTGCCATAGTCGTCATCG
CTGTGGCAGTCTTGGGTTGGGTTTTCTGCAGATCATCTAATGCAGCGTCA
AAGGTATCAGGACTGAAGTACGTGCGGCCCGCATCACCTAAAGTTGGTGT
GGTAGATGACTCGATGGTTCTCGCCCAACTATCCAGATCTGACCGTGTCT
TTGTTCCTGTGCGTGCCCAAGAAAACCCATACTTCATCGTAGAGGACTAG
TACCTCGGCGGGTACCGATGCACCTGTCTTCCCGGGTACACCGGTGTCCA
TTGTCAATACAACATAGATGAGTGCCTTGGAACAACATGTGGCAACGGAG
GAACATGTGTTGATCTGGTGAACGACTTCTACTGCTCCTGTCTACCTGCC
TACCATGGGAAGAACTGCGAGTTAGATGTGACCACCTGCAGTCCGAACCC
ATGTGAGCACGGGGGCAACTGTACTGACTCCGGAAGCGGAACATACTCCT
GTTCATGCAGCCCAGGGTACACTGGACAGGACTGTGAAGTGGACGTTGAT
GAATGCTCCTCAGGCCCTTGTACCAATGGCGGCACCTGTATTGACATGGT
CAACGATTACTACTGTGACTGCCTGAACGGCTTCTTCGGACAGAACTGCG
ATGGAGAAGTGGACTATTGTGACCCGAACCTCTGTCAACATGGCGGAACC
TGCCAGCCAATCACTAATGACTACAGTTGCACCTGCTCTACGGGTTACAT
GGGCTACAACTGCGAGATCGACATTGACGAATGTGAAGGAGTCATGTGCA
TGAACAACGGCACATGCGTGGACGGGATAGCATCCTACACCTGCAGGTGT
CTAGCTGGTTTCTCCGGTTCGCACTGTGGAACGAACATCGATGATTGCCA
AGGCAGGCCGTGTGAAAATGGCGGCACCTGCGTTGATGGTGTTGCTTCAT
ACAGCTGTGACTGTCCCGTTATGTTCACAGGCGAAAGATGCCAGCTGGTG
ATTCTCCCCAACCTCCCTGAAACAACAGAGCCGTATGTCTCCAGGGCGCA
GACACCAACGCCATCATTCCAGTCGACAACACCAGATACCGGCGGAATGC
CTGCACAGGATTCCGTGACTGCACAGCGCGTACCGATCATTGCAGGGTCC
GTCGTTGGTGCCATAGTCGTCATCGCTGTGGCAGTCTTGGGTTGGGTTTT
CTGCAGATCATCTAATGCAGCGTCAAAGGTATCAGGACTGAAGTACGTGC
GGCCCGCATCACCTAAAGTTGGTGTGGTAGATGACTCGATGGTTCTCGCC
CAACTATCCAGATCTGACCGTGTCTTTGTTCCTGTGCGTGCCCAAGAAAA
CCCATACTTCATCGTAGAGGACTAGTACCTCGGCGGGTACCGATGCACCT
GTCTTCCCGGGTACACCGGTGTCCATTGTCAATACAACATAGATGAGTGC
CTTGGAACAACATGTGGCAACGGAGGAACATGTGTTGATCTGGTGAACGA
CTTCTACTGCTCCTGTCTACCTGCCTACCATGGGAAGAACTGCGAGTTAG
ATGTGACCACCTGCAGTCCGAACCCATGTGAGCACGGGGGCAACTGTACT
GACTCCGGAAGCGGAACATACTCCTGTTCATGCAGCCCAGGGTACACTGG
ACAGGACTGTGAAGTGGACGTTGATGAATGCTCCTCAGGCCCTTGTACCA
ATGGCGGCACCTGTATTGACATGGTCAACGATTACTACTGTGACTGCCTG
AACGGCTTCTTCGGACAGAACTGCGATGGAGAAGTGGACTATTGTGACCC
GAACCTCTGTCAACATGGCGGAACCTGCCAGCCAATCACTAATGACTACA
GTTGCACCTGCTCTACGGGTTACATGGGCTACAACTGCGAGATCGACATT
GACGAATGTGAAGGAGTCATGTGCATGAACAACGGCACATGCGTGGACGG
GATAGCATCCTACACCTGCAGGTGTCTAGCTGGTTTCTCCGGTTCGCACT
GTGGAACGAACATCGATGATTGCCAAGGCAGGCCGTGTGAAAATGGCGGC
ACCTGCGTTGATGGTGTTGCTTCATACAGCTGTGACTGTCCCGTTATGTT
CACAGGCGAAAGATGCCAGCTGGTGATTCTCCCCAACCTCCCTGAAACAA
CAGAGCCGTATGTCTCCAGGGCGCAGACACCAACGCCATCATTCCAGTCG
ACAACACCAGATACCGGCGGAATGCCTGCACAGGATTCCGTGACTGCACA
GCGCGTACCGATCATTGCAGGGTCCGTCGTTGGTGCCATAGTCGTCATCG
CTGTGGCAGTCTTGGGTTGGGTTTTCTGCAGATCATCTAATGCAGCGTCA
AAGGTATCAGGACTGAAGTACGTGCGGCCCGCATCACCTAAAGTTGGTGT
GGTAGATGACTCGATGGTTCTCGCCCAACTATCCAGATCTGACCGTGTCT
TTGTTCCTGTGCGTGCCCAAGAAAACCCATACTTCATCGTAGAGGACTAG
TACCTCGGCGGGTACCGATGCACCTGTCTTCCCGGGTACACCGGTGTCCA
TTGTCAATACAACATAGATGAGTGCCTTGGAACAACATGTGGCAACGGAG
GAACATGTGTTGATCTGGTGAACGACTTCTACTGCTCCTGTCTACCTGCC
TACCATGGGAAGAACTGCGAGTTAGATGTGACCACCTGCAGTCCGAACCC
ATGTGAGCACGGGGGCAACTGTACTGACTCCGGAAGCGGAACATACTCCT
GTTCATGCAGCCCAGGGTACACTGGACAGGACTGTGAAGTGGACGTTGAT
GAATGCTCCTCAGGCCCTTGTACCAATGGCGGCACCTGTATTGACATGGT
CAACGATTACTACTGTGACTGCCTGAACGGCTTCTTCGGACAGAACTGCG
ATGGAGAAGTGGACTATTGTGACCCGAACCTCTGTCAACATGGCGGAACC
TGCCAGCCAATCACTAATGACTACAGTTGCACCTGCTCTACGGGTTACAT
GGGCTACAACTGCGAGATCGACATTGACGAATGTGAAGGAGTCATGTGCA
TGAACAACGGCACATGCGTGGACGGGATAGCATCCTACACCTGCAGGTGT
CTAGCTGGTTTCTCCGGTTCGCACTGTGGAACGAACATCGATGATTGCCA
AGGCAGGCCGTGTGAAAATGGCGGCACCTGCGTTGATGGTGTTGCTTCAT
ACAGCTGTGACTGTCCCGTTATGTTCACAGGCGAAAGATGCCAGCTGGTG
ATTCTCCCCAACCTCCCTGAAACAACAGAGCCGTATGTCTCCAGGGCGCA
GACACCAACGCCATCATTCCAGTCGACAACACCAGATACCGGCGGAATGC
CTGCACAGGATTCCGTGACTGCACAGCGCGTACCGATCATTGCAGGGTCC
GTCGTTGGTGCCATAGTCGTCATCGCTGTGGCAGTCTTGGGTTGGGTTTT
CTGCAGATCATCTAATGCAGCGTCAAAGGTATCAGGACTGAAGTACGTGC
GGCCCGCATCACCTAAAGTTGGTGTGGTAGATGACTCGATGGTTCTCGCC
CAACTATCCAGATCTGACCGTGTCTTTGTTCCTGTGCGTGCCCAAGAAAA
CCCATACTTCATCGTAGAGGACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| xpSc0039702 | genome | xpSc0039702:18476..22434 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97063_cuf6 |
| Biotype | protein_coding |
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