Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

transcript:BL97062_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97062_cuf4
Unique Nametranscript:BL97062_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97062_cuf4

>transcript:BL97062_cuf4-protein ID=transcript:BL97062_cuf4-protein|Name=transcript:BL97062_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=138bp
IGNYSCTCKPSFIGSYCETELSSDFDLVFDGSVDGYSSASYNIPDMTAVT
VSFWMQTTDRSNYGTAFSYALSEEVGSDNALTISDYTAFTVYVNGEVAYS
THGIQDDNWHHIAVTWTNTSGQWKLFDNGLLVDGGSGL
Run BLAST on NCBI

mRNA from alignment at xpSc0039702:16208..17386+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97062_cuf4 ID=transcript:BL97062_cuf4|Name=transcript:BL97062_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=1179bp|location=Sequence derived from alignment at xpSc0039702:16208..17386+ (Branchiostoma lanceolatum)
ATCGGGAACTACAGCTGTACGTGCAAACCATCGTTCATCGGCAGCTATTG CGAGACAGGTAATTATATTGATAATCTATCATTTTGGTATTCATCCGACA TTTTGACTTTCAAATAAACAATGGGAAACATACACCGTATGAATACATGT TTCTTTGTTATTTTGGCAACTTACAAATTTATTGTAATCTAATTGCACTA CACATTAAGCAAACAAATTATCTTCAGCAAAACAAAACAAAACAAAAAAC AAAAGCAGTGCACCCTTAAAAGATGCCTTCCTAACTAAAATGTCTTTTAT ATATTTTAGAGCTGTCCTCAGATTTTGACCTAGTCTTTGATGGTAGTGTG GATGGGTACAGTTCCGCCAGCTACAACATTCCGGATATGACTGCTGTTAC GGTGTCGTTTTGGATGCAGACCACTGACCGTAGTAACTACGGCACCGCAT TCTCCTATGCCCTGGTAAAATTATGATTATGATAACTTTATTGCTAAAAT GTACGGCAATCTTTGTTACTTAATCGCAGTTCTTAGATGTATTGTTTATA TCTATCTCTATGAAAAATGGAGATTTGTTCATGGAGATATTGTTTTGAGC GTGTTTGCGTGTGTGTTTGGGTGCGTGTATGTGTTTGCATCCGGATGCTT AAAGTCAGCATAACTGAAGAACGTGTAGATGGATTGTAATGGTATTTGGT GTGTGGGTAGGTGTTGGAAGAACAATGGCCAAGGTCAATTTTGGCCCCCT GGTATGTGGCACTGGAACTGCATTGGCTTATTTTGTTAAAATCTTCCAAG GAGAATAACTGAAGTTAGGAATGACATACAACATGCTTGCGAAAACTAAC TATTTGAATAGATAACCTTATGATTTAATGAATCTATGTATAGAGATCGC CTTGTATGCATCTTTCTTACTAAACATTATGCTTAGAGTAAGTGTTCATG TTTTTGTCCCGTTCCCCAATCCCTAGAGTGAAGAGGTCGGGAGTGACAAC GCTTTGACGATATCTGACTACACCGCCTTCACGGTCTATGTAAATGGGGA GGTAGCCTACAGCACCCATGGGATCCAAGACGACAACTGGCACCACATCG CTGTGACATGGACGAACACTTCAGGCCAGTGGAAGCTATTCGACAATGGG CTTCTTGTCGATGGAGGCAGTGGACTTGG

Coding sequence (CDS) from alignment at xpSc0039702:16208..17386+

>transcript:BL97062_cuf4 ID=transcript:BL97062_cuf4|Name=transcript:BL97062_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=1242bp|location=Sequence derived from alignment at xpSc0039702:16208..17386+ (Branchiostoma lanceolatum)
ATCGGGAACTACAGCTGTACGTGCAAACCATCGTTCATCGGCAGCTATTG
CGAGACAGAGCTGTCCTCAGATTTTGACCTAGTCTTTGATGGTAGTGTGG
ATGGGTACAGTTCCGCCAGCTACAACATTCCGGATATGACTGCTGTTACG
GTGTCGTTTTGGATGCAGACCACTGACCGTAGTAACTACGGCACCGCATT
CTCCTATGCCCTGAGTGAAGAGGTCGGGAGTGACAACGCTTTGACGATAT
CTGACTACACCGCCTTCACGGTCTATGTAAATGGGGAGGTAGCCTACAGC
ACCCATGGGATCCAAGACGACAACTGGCACCACATCGCTGTGACATGGAC
GAACACTTCAGGCCAGTGGAAGCTATTCGACAATGGGCTTCTTGTCGATG
GAGGCAGTGGACTTATCGGGAACTACAGCTGTACGTGCAAACCATCGTTC
ATCGGCAGCTATTGCGAGACAGAGCTGTCCTCAGATTTTGACCTAGTCTT
TGATGGTAGTGTGGATGGGTACAGTTCCGCCAGCTACAACATTCCGGATA
TGACTGCTGTTACGGTGTCGTTTTGGATGCAGACCACTGACCGTAGTAAC
TACGGCACCGCATTCTCCTATGCCCTGAGTGAAGAGGTCGGGAGTGACAA
CGCTTTGACGATATCTGACTACACCGCCTTCACGGTCTATGTAAATGGGG
AGGTAGCCTACAGCACCCATGGGATCCAAGACGACAACTGGCACCACATC
GCTGTGACATGGACGAACACTTCAGGCCAGTGGAAGCTATTCGACAATGG
GCTTCTTGTCGATGGAGGCAGTGGACTTATCGGGAACTACAGCTGTACGT
GCAAACCATCGTTCATCGGCAGCTATTGCGAGACAGAGCTGTCCTCAGAT
TTTGACCTAGTCTTTGATGGTAGTGTGGATGGGTACAGTTCCGCCAGCTA
CAACATTCCGGATATGACTGCTGTTACGGTGTCGTTTTGGATGCAGACCA
CTGACCGTAGTAACTACGGCACCGCATTCTCCTATGCCCTGAGTGAAGAG
GTCGGGAGTGACAACGCTTTGACGATATCTGACTACACCGCCTTCACGGT
CTATGTAAATGGGGAGGTAGCCTACAGCACCCATGGGATCCAAGACGACA
ACTGGCACCACATCGCTGTGACATGGACGAACACTTCAGGCCAGTGGAAG
CTATTCGACAATGGGCTTCTTGTCGATGGAGGCAGTGGACTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97062gene:BL97062Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97062_cuf4-E1BL97062_cuf4-E1-1564476830-554520Branchiostoma lanceolatumexon
BL97062_cuf4-E2BL97062_cuf4-E2-1564476830-554522Branchiostoma lanceolatumexon
BL97062_cuf4-E3BL97062_cuf4-E3-1564476830-554525Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97062_cuf4transcript:BL97062_cuf4-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xpSc0039702genomexpSc0039702:16208..17386 +
Properties
Property NameValue
Transcript idBL97062_cuf4
Biotypeprotein_coding